Wall clock time and date at job start Tue Mar 31 2020 15:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47234 * 2 1 4 4 H 1.08995 * 109.47061 * 185.15847 * 3 2 1 5 5 C 1.50701 * 109.47081 * 305.15671 * 3 2 1 6 6 H 1.08003 * 119.99882 * 120.00015 * 5 3 2 7 7 C 1.37875 * 120.00225 * 300.00188 * 5 3 2 8 8 N 1.31514 * 119.99858 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00119 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46915 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46894 * 120.00049 * 9 7 5 12 12 H 1.48500 * 109.46956 * 239.99997 * 9 7 5 13 13 N 1.46896 * 109.47334 * 65.15864 * 3 2 1 14 14 C 1.46901 * 111.00481 * 85.89790 * 13 3 2 15 15 C 1.53001 * 109.47484 * 174.83280 * 14 13 3 16 16 H 1.08992 * 109.46971 * 60.00263 * 15 14 13 17 17 O 1.42904 * 109.46873 * 300.00207 * 15 14 13 18 18 C 1.50696 * 109.46779 * 180.02562 * 15 14 13 19 19 C 1.38239 * 120.00219 * 84.72558 * 18 15 14 20 20 C 1.38231 * 120.00122 * 179.80402 * 19 18 15 21 21 C 1.38240 * 119.99806 * 0.42301 * 20 19 18 22 22 S 1.76198 * 119.99742 * 179.78778 * 21 20 19 23 23 C 1.81401 * 104.45094 * 270.02278 * 22 21 20 24 24 O 1.42102 * 104.27998 * 26.09560 * 22 21 20 25 25 O 1.42105 * 104.27688 * 153.95121 * 22 21 20 26 26 C 1.38230 * 120.00060 * 359.81167 * 21 20 19 27 27 C 1.38233 * 120.00052 * 359.97438 * 26 21 20 28 28 H 1.09003 * 109.46767 * 294.85007 * 1 2 3 29 29 H 1.08993 * 109.47094 * 174.84754 * 1 2 3 30 30 H 1.09003 * 109.47004 * 54.84807 * 1 2 3 31 31 H 1.09002 * 109.46604 * 119.99579 * 2 1 3 32 32 H 1.08997 * 109.47220 * 239.99685 * 2 1 3 33 33 H 0.96995 * 120.00274 * 179.97438 * 8 7 5 34 34 H 1.00911 * 110.99985 * 321.94783 * 13 3 2 35 35 H 1.08998 * 109.46976 * 294.83834 * 14 13 3 36 36 H 1.09004 * 109.46501 * 54.83205 * 14 13 3 37 37 H 0.96704 * 113.99556 * 299.99695 * 17 15 14 38 38 H 1.08001 * 119.99656 * 359.97438 * 19 18 15 39 39 H 1.08004 * 120.00353 * 180.21081 * 20 19 18 40 40 H 1.09001 * 109.46989 * 60.00001 * 23 22 21 41 41 H 1.08998 * 109.47435 * 180.02562 * 23 22 21 42 42 H 1.09007 * 109.46869 * 299.99973 * 23 22 21 43 43 H 1.08001 * 120.00044 * 179.97438 * 26 21 20 44 44 H 1.08004 * 119.99990 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4438 -0.0924 5 6 1.4362 2.1888 -1.1616 6 1 0.8270 3.0628 -0.9840 7 6 1.6613 1.7559 -2.4512 8 7 2.4026 0.6914 -2.6674 9 14 0.9121 2.6806 -3.8910 10 1 0.1260 3.8337 -3.3836 11 1 1.9948 3.1731 -4.7802 12 1 0.0206 1.7704 -4.6539 13 7 1.6548 2.0981 1.2568 14 6 2.6432 1.8367 2.3116 15 6 2.2774 2.6373 3.5631 16 1 1.2884 2.3378 3.9098 17 8 2.2709 4.0319 3.2514 18 6 3.2918 2.3695 4.6449 19 6 4.4699 3.0919 4.6819 20 6 5.3985 2.8490 5.6766 21 6 5.1531 1.8778 6.6292 22 16 6.3393 1.5644 7.8938 23 6 7.4188 0.2849 7.1949 24 8 7.0426 2.7920 8.0267 25 8 5.5742 1.0383 8.9695 26 6 3.9773 1.1521 6.5893 27 6 3.0466 1.3980 5.5972 28 1 -0.3633 0.4319 0.9326 29 1 -0.3633 -1.0234 -0.0923 30 1 -0.3633 0.5917 -0.8403 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 2.5607 0.3866 -3.5746 34 1 0.7320 1.8104 1.5467 35 1 2.6482 0.7730 2.5493 36 1 3.6323 2.1362 1.9649 37 1 3.1208 4.3683 2.9358 38 1 4.6634 3.8478 3.9353 39 1 6.3175 3.4157 5.7076 40 1 7.8847 0.6605 6.2839 41 1 8.1916 0.0263 7.9187 42 1 6.8282 -0.6013 6.9622 43 1 3.7857 0.3930 7.3333 44 1 2.1281 0.8307 5.5658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846996258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:49 Heat of formation + Delta-G solvation = -120.157565 kcal Electronic energy + Delta-G solvation = -25503.260819 eV Core-core repulsion = 21739.826870 eV Total energy + Delta-G solvation = -3763.433948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80681 -38.70046 -38.13576 -37.42475 -36.96534 -34.41853 -33.11669 -32.14938 -32.02281 -30.28061 -29.15164 -27.47185 -25.22358 -24.30372 -23.88783 -22.29001 -21.22617 -20.03263 -19.00322 -18.31527 -17.83990 -17.29523 -17.11664 -16.85283 -16.49613 -16.17354 -15.99763 -15.60403 -15.22675 -14.98704 -14.56884 -14.43221 -14.33634 -14.16635 -14.09802 -13.93482 -13.77679 -13.48468 -13.15030 -13.12918 -13.03977 -12.85510 -12.64860 -12.45500 -12.39475 -12.18522 -11.99601 -11.95856 -11.69976 -11.69173 -11.43652 -11.14417 -10.85225 -10.43463 -10.14725 -10.04994 -8.89377 -8.05759 -6.13231 -0.85589 -0.23826 0.29182 1.41153 1.44881 1.55664 1.92238 2.36466 2.46228 3.03271 3.19285 3.23355 3.30788 3.52151 3.73290 3.91846 4.03970 4.04907 4.12032 4.16888 4.25243 4.33901 4.47520 4.54728 4.60247 4.68168 4.70329 4.75753 4.85632 4.97955 4.99451 5.04717 5.09045 5.11297 5.35568 5.42626 5.45384 5.70907 5.75082 5.80927 5.83958 6.32489 6.67600 6.73883 6.88625 7.00074 7.54680 8.99626 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.002354 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.659905 B =11892.124559 C =11956.658592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.139 4.139 3 C 0.223 3.777 4 H -0.002 1.002 5 C -0.496 4.496 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.679 5.679 14 C 0.041 3.959 15 C 0.155 3.845 16 H 0.111 0.889 17 O -0.554 6.554 18 C -0.067 4.067 19 C -0.142 4.142 20 C -0.031 4.031 21 C -0.667 4.667 22 S 2.512 3.488 23 C -0.627 4.627 24 O -0.977 6.977 25 O -0.976 6.976 26 C -0.031 4.031 27 C -0.140 4.140 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.258 0.742 34 H 0.333 0.667 35 H 0.033 0.967 36 H 0.061 0.939 37 H 0.382 0.618 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.160 0.840 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.709 -2.884 19.665 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.179 4.179 3 C 0.115 3.885 4 H 0.016 0.984 5 C -0.535 4.535 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.310 5.310 14 C -0.089 4.089 15 C 0.095 3.905 16 H 0.128 0.872 17 O -0.361 6.361 18 C -0.068 4.068 19 C -0.161 4.161 20 C -0.049 4.049 21 C -0.753 4.753 22 S 2.695 3.305 23 C -0.781 4.781 24 O -0.974 6.974 25 O -0.973 6.973 26 C -0.049 4.049 27 C -0.158 4.158 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.151 0.849 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.231 0.769 38 H 0.161 0.839 39 H 0.175 0.825 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.177 0.823 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.439 -1.990 20.327 22.099 hybrid contribution -0.099 -0.813 -1.940 2.105 sum 8.340 -2.803 18.387 20.384 Atomic orbital electron populations 1.21492 0.95976 0.99598 1.00911 1.21962 0.96488 1.00014 0.99419 1.18952 0.93554 0.89345 0.86692 0.98437 1.21312 1.30135 1.11216 0.90865 0.93157 1.25554 0.95998 0.95892 1.00954 1.70003 1.40108 1.25064 1.20951 0.85649 0.78226 0.78842 0.79765 1.19541 1.21075 1.20812 1.60578 1.04474 1.62908 1.03071 1.22539 0.96848 0.97479 0.92071 1.20825 0.97615 0.82013 0.90018 0.87166 1.86605 1.39298 1.22529 1.87659 1.21017 0.95398 0.94769 0.95570 1.21298 0.93730 1.00976 1.00055 1.21149 0.99530 0.93384 0.90868 1.30709 1.15535 1.09212 1.19865 1.04701 0.75217 0.76364 0.74225 1.30054 1.15697 1.17013 1.15320 1.93536 1.74360 1.43633 1.85870 1.93535 1.70392 1.81540 1.51816 1.21187 0.91123 0.96414 0.96221 1.21397 1.01178 0.98461 0.94800 0.93114 0.93954 0.93718 0.95468 0.92077 0.93249 0.84874 0.94931 0.92063 0.76903 0.83857 0.82527 0.83091 0.82746 0.82976 0.82296 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.40 71.98 0.68 -4.22 16 2 C -0.14 -6.21 5.51 30.60 0.17 -6.05 16 3 C 0.22 10.63 2.33 44.17 0.10 10.74 16 4 H 0.00 -0.12 7.70 -2.39 -0.02 -0.14 16 5 C -0.50 -26.44 7.25 25.60 0.19 -26.26 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.01 0.76 5.28 84.65 0.45 1.20 16 8 N -0.92 -51.46 11.38 21.45 0.24 -51.22 16 9 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 N -0.68 -26.72 6.07 -495.46 -3.01 -29.73 16 14 C 0.04 1.28 5.15 86.30 0.44 1.73 16 15 C 0.16 4.01 3.46 29.85 0.10 4.12 16 16 H 0.11 2.73 8.05 -2.39 -0.02 2.71 16 17 O -0.55 -15.90 13.00 -148.98 -1.94 -17.84 16 18 C -0.07 -1.49 5.00 -19.87 -0.10 -1.59 16 19 C -0.14 -2.91 9.33 22.27 0.21 -2.70 16 20 C -0.03 -0.57 9.47 22.27 0.21 -0.36 16 21 C -0.67 -11.60 5.66 22.27 0.13 -11.48 16 22 S 2.51 35.62 5.80 -56.49 -0.33 35.29 16 23 C -0.63 -2.68 10.80 113.37 1.22 -1.46 16 24 O -0.98 -20.69 17.13 -127.65 -2.19 -22.88 16 25 O -0.98 -20.28 17.13 -127.65 -2.19 -22.47 16 26 C -0.03 -0.55 9.47 22.27 0.21 -0.34 16 27 C -0.14 -2.74 9.68 22.27 0.22 -2.53 16 28 H 0.05 1.76 6.63 -2.39 -0.02 1.75 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 2.01 6.85 -2.39 -0.02 1.99 16 31 H 0.03 1.08 7.50 -2.39 -0.02 1.07 16 32 H 0.06 3.15 6.22 -2.39 -0.01 3.13 16 33 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 34 H 0.33 12.43 6.70 -89.68 -0.60 11.83 16 35 H 0.03 1.00 7.53 -2.39 -0.02 0.98 16 36 H 0.06 2.01 7.93 -2.38 -0.02 1.99 16 37 H 0.38 8.93 7.39 -74.05 -0.55 8.38 16 38 H 0.14 2.49 6.62 -2.91 -0.02 2.47 16 39 H 0.16 2.28 7.57 -2.91 -0.02 2.26 16 40 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.15 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.16 2.13 7.57 -2.91 -0.02 2.11 16 44 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -74.33 370.20 -3.28 -77.61 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.12 Total: 25.09 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 4.22 Total: -39.18 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -2.77 Total: -80.95 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -6.31 Total: -63.18 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 35.62 SS G_CDS: -0.33 Total: 35.29 kcal Total: -74.33 -3.28 -77.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.547 kcal (2) G-P(sol) polarization free energy of solvation -74.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds