Wall clock time and date at job start Tue Mar 31 2020 15:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47060 * 2 1 4 4 H 1.09007 * 109.46445 * 305.85791 * 3 2 1 5 5 C 1.50695 * 109.47149 * 185.86047 * 3 2 1 6 6 H 1.08003 * 119.99813 * 243.36952 * 5 3 2 7 7 C 1.37881 * 120.00410 * 63.37519 * 5 3 2 8 8 N 1.31513 * 120.00269 * 196.02308 * 7 5 3 9 9 Si 1.86800 * 119.99658 * 16.02252 * 7 5 3 10 10 H 1.48495 * 109.47172 * 92.89533 * 9 7 5 11 11 H 1.48503 * 109.47073 * 212.89268 * 9 7 5 12 12 H 1.48495 * 109.47285 * 332.89196 * 9 7 5 13 13 N 1.46894 * 109.47157 * 65.85614 * 3 2 1 14 14 C 1.46900 * 111.00375 * 258.58893 * 13 3 2 15 15 C 1.52995 * 109.47448 * 175.41321 * 14 13 3 16 16 H 1.09001 * 109.46988 * 59.99782 * 15 14 13 17 17 O 1.42895 * 109.47432 * 300.00189 * 15 14 13 18 18 C 1.50699 * 109.47326 * 179.97438 * 15 14 13 19 19 C 1.38230 * 120.00227 * 84.72998 * 18 15 14 20 20 C 1.38236 * 120.00342 * 179.81559 * 19 18 15 21 21 C 1.38229 * 119.99816 * 0.41180 * 20 19 18 22 22 S 1.76199 * 120.00261 * 179.79817 * 21 20 19 23 23 C 1.81403 * 104.44742 * 270.02235 * 22 21 20 24 24 O 1.42105 * 104.27662 * 26.08860 * 22 21 20 25 25 O 1.42099 * 104.27991 * 153.95128 * 22 21 20 26 26 C 1.38239 * 120.00009 * 359.81658 * 21 20 19 27 27 C 1.38227 * 120.00095 * 0.02562 * 26 21 20 28 28 H 1.09003 * 109.47268 * 175.83973 * 1 2 3 29 29 H 1.09000 * 109.47365 * 295.83395 * 1 2 3 30 30 H 1.08997 * 109.47975 * 55.83693 * 1 2 3 31 31 H 1.09003 * 109.46845 * 240.00598 * 2 1 3 32 32 H 1.08996 * 109.47457 * 119.99739 * 2 1 3 33 33 H 0.97000 * 120.00209 * 179.97438 * 8 7 5 34 34 H 1.00900 * 110.99916 * 134.63399 * 13 3 2 35 35 H 1.09001 * 109.47204 * 55.41235 * 14 13 3 36 36 H 1.09003 * 109.47189 * 295.41364 * 14 13 3 37 37 H 0.96702 * 113.99805 * 299.99753 * 17 15 14 38 38 H 1.08005 * 120.00035 * 359.97438 * 19 18 15 39 39 H 1.08002 * 120.00110 * 180.20977 * 20 19 18 40 40 H 1.08999 * 109.47231 * 59.99305 * 23 22 21 41 41 H 1.09001 * 109.47246 * 180.02562 * 23 22 21 42 42 H 1.08998 * 109.46975 * 299.99623 * 23 22 21 43 43 H 1.08003 * 119.99983 * 179.97438 * 26 21 20 44 44 H 1.08001 * 120.00616 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5934 1.9857 -0.8330 5 6 3.5399 1.4450 -0.1451 6 1 4.1585 1.8365 0.6490 7 6 4.1225 0.9477 -1.2915 8 7 5.4046 0.6550 -1.3038 9 14 3.0908 0.6898 -2.8272 10 1 3.1678 1.9000 -3.6843 11 1 3.6063 -0.4827 -3.5788 12 1 1.6781 0.4470 -2.4394 13 7 1.6691 2.0930 1.2638 14 6 0.4997 2.9639 1.0844 15 6 0.0746 3.5326 2.4396 16 1 0.8956 4.1097 2.8651 17 8 -0.2612 2.4601 3.3221 18 6 -1.1246 4.4265 2.2554 19 6 -2.3949 3.8821 2.2285 20 6 -3.4952 4.7025 2.0634 21 6 -3.3245 6.0663 1.9167 22 16 -4.7266 7.1115 1.7009 23 6 -4.9697 7.1775 -0.0955 24 8 -5.7904 6.4034 2.3224 25 8 -4.3011 8.3748 2.1932 26 6 -2.0539 6.6103 1.9389 27 6 -0.9539 5.7903 2.1073 28 1 -0.3634 -1.0250 -0.0746 29 1 -0.3634 0.4478 0.9249 30 1 -0.3635 0.5770 -0.8503 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 5.8144 0.3047 -2.1102 34 1 2.4475 2.6074 1.6477 35 1 -0.3212 2.3868 0.6588 36 1 0.7559 3.7821 0.4112 37 1 -0.9860 1.9032 3.0064 38 1 -2.5280 2.8160 2.3390 39 1 -4.4879 4.2774 2.0457 40 1 -5.1496 6.1716 -0.4750 41 1 -5.8270 7.8109 -0.3231 42 1 -4.0782 7.5899 -0.5679 43 1 -1.9205 7.6759 1.8239 44 1 0.0389 6.2152 2.1242 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846996259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:54 Heat of formation + Delta-G solvation = -90.227116 kcal Electronic energy + Delta-G solvation = -25703.760948 eV Core-core repulsion = 21941.624882 eV Total energy + Delta-G solvation = -3762.136067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.00811 -37.52754 -37.44633 -36.28442 -35.93093 -32.69920 -32.09200 -31.31804 -31.26942 -29.94297 -28.38610 -26.27773 -23.42188 -23.18319 -22.39798 -21.33816 -19.70044 -19.39968 -18.30832 -17.31649 -16.75859 -16.55199 -16.53135 -15.82443 -15.38054 -15.19747 -14.73408 -14.35019 -14.10736 -13.85674 -13.75170 -13.64684 -13.60070 -13.41108 -12.94625 -12.89345 -12.68231 -12.42842 -12.32858 -12.25143 -11.74259 -11.65758 -11.58158 -11.47282 -11.21893 -11.04710 -10.90696 -10.79084 -10.49420 -10.04810 -9.88908 -9.54049 -9.33908 -9.24803 -9.22501 -8.50452 -7.52805 -6.21124 -4.16657 -0.31994 0.50095 1.01104 2.50003 3.08701 3.19537 3.30070 3.32197 3.58437 3.74140 4.26834 4.32585 4.33554 4.34954 4.44553 4.58071 4.59500 4.97476 5.04563 5.09125 5.19365 5.20928 5.22115 5.34049 5.47437 5.61583 5.74634 5.84446 5.87535 5.93956 5.97721 5.99418 6.17056 6.27535 6.51896 6.56555 6.67365 6.94182 6.95676 7.37481 7.56469 7.66810 7.87965 8.25232 8.51474 8.87550 9.44629 10.91702 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.002650 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.306224 B =10563.721744 C =10852.264428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.193 3.807 4 H 0.002 0.998 5 C -0.536 4.536 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.864 3.136 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.251 1.251 13 N -0.669 5.669 14 C 0.031 3.969 15 C 0.142 3.858 16 H 0.110 0.890 17 O -0.536 6.536 18 C -0.051 4.051 19 C -0.133 4.133 20 C -0.021 4.021 21 C -0.667 4.667 22 S 2.503 3.497 23 C -0.650 4.650 24 O -0.940 6.940 25 O -0.940 6.940 26 C -0.022 4.022 27 C -0.131 4.131 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.264 0.736 34 H 0.341 0.659 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.370 0.630 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.142 0.858 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.755 11.439 2.539 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C 0.085 3.915 4 H 0.019 0.981 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.125 4.125 8 N -0.524 5.524 9 Si 0.690 3.310 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.175 1.175 13 N -0.300 5.300 14 C -0.100 4.100 15 C 0.082 3.918 16 H 0.128 0.872 17 O -0.340 6.340 18 C -0.052 4.052 19 C -0.152 4.152 20 C -0.040 4.040 21 C -0.754 4.754 22 S 2.683 3.317 23 C -0.800 4.800 24 O -0.937 6.937 25 O -0.937 6.937 26 C -0.041 4.041 27 C -0.150 4.150 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.217 0.783 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.942 11.471 3.642 24.154 hybrid contribution 0.198 -0.104 -2.460 2.470 sum -20.743 11.367 1.182 23.683 Atomic orbital electron populations 1.21870 0.98820 0.99527 1.00260 1.21852 0.92564 0.99358 1.00909 1.19453 0.95510 0.90797 0.85782 0.98058 1.21219 0.89427 1.42739 1.04032 0.90604 1.24901 0.94761 0.94007 0.98802 1.69987 1.11704 1.42291 1.28440 0.87194 0.82300 0.77856 0.83620 1.20876 1.21218 1.17515 1.60467 1.07345 1.32785 1.29446 1.22704 0.96927 0.96112 0.94240 1.21026 0.92575 0.86585 0.91636 0.87214 1.86669 1.57415 1.42829 1.47118 1.21151 0.96266 0.95158 0.92593 1.21050 0.91948 1.00469 1.01706 1.20885 0.99730 0.91318 0.92045 1.30444 1.16187 1.09032 1.19715 1.05034 0.74433 0.74493 0.77744 1.30227 1.12064 1.12063 1.25658 1.93585 1.53741 1.73615 1.72747 1.93585 1.81847 1.40823 1.77423 1.20920 0.90756 1.00214 0.92175 1.21181 0.99542 0.92940 1.01368 0.94544 0.92805 0.94570 0.93227 0.92087 0.92567 0.84093 0.90862 0.95049 0.78286 0.84980 0.84079 0.84920 0.85069 0.84907 0.84055 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.74 37.15 0.32 -2.19 16 2 C -0.11 -2.29 4.85 -26.73 -0.13 -2.42 16 3 C 0.19 4.29 1.75 -68.87 -0.12 4.17 16 4 H 0.00 0.04 6.35 -51.92 -0.33 -0.29 16 5 C -0.54 -14.34 9.03 -34.44 -0.31 -14.65 16 6 H 0.08 2.20 7.67 -52.48 -0.40 1.80 16 7 C 0.08 2.19 5.31 -17.82 -0.09 2.09 16 8 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 9 Si 0.86 20.49 25.76 -169.99 -4.38 16.11 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.25 -5.59 5.49 56.52 0.31 -5.28 16 13 N -0.67 -12.56 5.95 -107.95 -0.64 -13.21 16 14 C 0.03 0.46 4.68 -3.83 -0.02 0.44 16 15 C 0.14 1.78 3.45 -27.89 -0.10 1.68 16 16 H 0.11 1.37 8.05 -51.93 -0.42 0.96 16 17 O -0.54 -7.18 13.00 -35.23 -0.46 -7.64 16 18 C -0.05 -0.56 5.00 -104.62 -0.52 -1.08 16 19 C -0.13 -1.31 9.33 -39.59 -0.37 -1.68 16 20 C -0.02 -0.19 9.47 -39.59 -0.37 -0.57 16 21 C -0.67 -5.97 5.66 -39.58 -0.22 -6.20 16 22 S 2.50 18.76 5.80 -107.50 -0.62 18.14 16 23 C -0.65 -2.36 10.80 101.05 1.09 -1.27 16 24 O -0.94 -9.96 17.13 -57.54 -0.99 -10.95 16 25 O -0.94 -10.01 17.13 -57.54 -0.99 -11.00 16 26 C -0.02 -0.20 9.47 -39.59 -0.37 -0.58 16 27 C -0.13 -1.34 9.68 -39.58 -0.38 -1.72 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.83 6.65 -51.93 -0.35 0.49 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 1.11 4.88 -51.93 -0.25 0.86 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.34 6.61 7.96 -39.29 -0.31 6.30 16 35 H 0.07 1.06 6.01 -51.93 -0.31 0.74 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.37 3.86 7.40 45.56 0.34 4.20 16 38 H 0.13 1.05 6.63 -52.48 -0.35 0.70 16 39 H 0.14 1.02 7.57 -52.49 -0.40 0.62 16 40 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 42 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.14 1.05 7.57 -52.48 -0.40 0.65 16 44 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -35.60 365.75 -9.18 -44.78 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.79 Total: 7.76 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -1.60 Total: -23.98 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.13 Total: -38.72 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -2.43 Total: -29.59 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.38 Total: 16.11 kcal Atomic # 16 Polarization: 18.76 SS G_CDS: -0.62 Total: 18.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.60 -9.18 -44.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.445 kcal (2) G-P(sol) polarization free energy of solvation -35.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds