Wall clock time and date at job start Tue Mar 31 2020 15:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46880 * 2 1 4 4 H 1.08999 * 109.47253 * 305.83859 * 3 2 1 5 5 C 1.50701 * 109.47291 * 185.84028 * 3 2 1 6 6 H 1.07997 * 120.00014 * 243.41790 * 5 3 2 7 7 C 1.37878 * 119.99936 * 63.41356 * 5 3 2 8 8 N 1.31518 * 120.00225 * 196.04910 * 7 5 3 9 9 Si 1.86798 * 120.00040 * 16.04337 * 7 5 3 10 10 H 1.48505 * 109.47056 * 92.71200 * 9 7 5 11 11 H 1.48495 * 109.47251 * 212.71398 * 9 7 5 12 12 H 1.48494 * 109.47278 * 332.71541 * 9 7 5 13 13 N 1.46905 * 109.47435 * 65.83879 * 3 2 1 14 14 C 1.46896 * 111.00161 * 258.59655 * 13 3 2 15 15 C 1.52996 * 109.47329 * 175.23324 * 14 13 3 16 16 H 1.08997 * 109.46995 * 305.00211 * 15 14 13 17 17 O 1.42901 * 109.47296 * 64.99907 * 15 14 13 18 18 C 1.50701 * 109.47266 * 185.00249 * 15 14 13 19 19 C 1.38241 * 119.99975 * 99.99900 * 18 15 14 20 20 C 1.38228 * 119.99756 * 180.02562 * 19 18 15 21 21 C 1.38240 * 120.00077 * 359.97438 * 20 19 18 22 22 S 1.76198 * 119.99847 * 179.97438 * 21 20 19 23 23 C 1.81402 * 104.44991 * 90.00142 * 22 21 20 24 24 O 1.42095 * 104.27964 * 333.92697 * 22 21 20 25 25 O 1.42105 * 104.27898 * 206.07497 * 22 21 20 26 26 C 1.38237 * 120.00009 * 0.25529 * 21 20 19 27 27 C 1.38231 * 119.99961 * 359.46870 * 26 21 20 28 28 H 1.09005 * 109.47122 * 175.85611 * 1 2 3 29 29 H 1.08993 * 109.47413 * 295.85501 * 1 2 3 30 30 H 1.09003 * 109.46680 * 55.85946 * 1 2 3 31 31 H 1.08999 * 109.47524 * 239.99847 * 2 1 3 32 32 H 1.09003 * 109.46793 * 119.99491 * 2 1 3 33 33 H 0.96988 * 120.00264 * 179.97438 * 8 7 5 34 34 H 1.00903 * 110.99573 * 134.64256 * 13 3 2 35 35 H 1.09006 * 109.47114 * 55.23245 * 14 13 3 36 36 H 1.09008 * 109.47226 * 295.23758 * 14 13 3 37 37 H 0.96702 * 113.99597 * 60.00243 * 17 15 14 38 38 H 1.07992 * 119.99870 * 359.97438 * 19 18 15 39 39 H 1.08002 * 119.99958 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.46978 * 299.99477 * 23 22 21 41 41 H 1.09003 * 109.47148 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.46928 * 59.99898 * 23 22 21 43 43 H 1.07999 * 119.99791 * 179.72808 * 26 21 20 44 44 H 1.07998 * 120.00295 * 180.27174 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5938 1.9856 -0.8331 5 6 3.5400 1.4450 -0.1446 6 1 4.1584 1.8359 0.6499 7 6 4.1229 0.9483 -1.2911 8 7 5.4049 0.6550 -1.3031 9 14 3.0918 0.6918 -2.8274 10 1 3.1661 1.9043 -3.6816 11 1 3.6099 -0.4776 -3.5818 12 1 1.6796 0.4449 -2.4403 13 7 1.6687 2.0932 1.2637 14 6 0.4993 2.9639 1.0838 15 6 0.0711 3.5292 2.4395 16 1 -0.1006 2.7095 3.1371 17 8 1.1009 4.3795 2.9478 18 6 -1.1995 4.3225 2.2742 19 6 -2.4160 3.7566 2.6072 20 6 -3.5815 4.4841 2.4550 21 6 -3.5305 5.7778 1.9705 22 16 -5.0162 6.7049 1.7760 23 6 -5.2333 7.5508 3.3659 24 8 -6.0232 5.7190 1.5941 25 8 -4.7135 7.6408 0.7504 26 6 -2.3144 6.3420 1.6331 27 6 -1.1484 5.6165 1.7906 28 1 -0.3634 -1.0250 -0.0743 29 1 -0.3634 0.4481 0.9247 30 1 -0.3633 0.5768 -0.8506 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8149 0.3053 -2.1095 34 1 2.4471 2.6078 1.6477 35 1 -0.3205 2.3873 0.6552 36 1 0.7565 3.7837 0.4130 37 1 1.3068 5.1324 2.3769 38 1 -2.4559 2.7458 2.9853 39 1 -4.5319 4.0418 2.7148 40 1 -5.3164 6.8114 4.1625 41 1 -6.1397 8.1555 3.3350 42 1 -4.3740 8.1942 3.5555 43 1 -2.2751 7.3512 1.2504 44 1 -0.1979 6.0589 1.5311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846996260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:58 Heat of formation + Delta-G solvation = -91.795223 kcal Electronic energy + Delta-G solvation = -25649.867502 eV Core-core repulsion = 21887.663437 eV Total energy + Delta-G solvation = -3762.204065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.01944 -37.57123 -37.44661 -36.28227 -35.95854 -32.66796 -32.07383 -31.33183 -31.24022 -29.96663 -28.41207 -26.25167 -23.42343 -23.17679 -22.36391 -21.30560 -19.67857 -19.40077 -18.31011 -17.31579 -16.81274 -16.56140 -16.52666 -15.76223 -15.53384 -15.13177 -14.70688 -14.39810 -14.07735 -13.91840 -13.81079 -13.66223 -13.46988 -13.29743 -13.06902 -12.87368 -12.69093 -12.42476 -12.32631 -12.22058 -11.70434 -11.67723 -11.51522 -11.37300 -11.32993 -11.05133 -10.89259 -10.78728 -10.48586 -10.05610 -9.88063 -9.51351 -9.34007 -9.26462 -9.19537 -8.47471 -7.54288 -6.18403 -4.13875 -0.32679 0.49520 1.00838 2.49643 3.08481 3.23180 3.33513 3.36752 3.58472 3.73059 4.27142 4.31418 4.34137 4.35900 4.39677 4.57406 4.58296 4.97133 5.03450 5.11995 5.16031 5.20466 5.25755 5.41946 5.45023 5.63236 5.74456 5.83027 5.91047 5.96763 6.01481 6.04018 6.21684 6.28970 6.51872 6.61754 6.70970 6.97436 6.98816 7.39762 7.55600 7.59831 7.89822 8.29976 8.54442 8.90571 9.47542 10.94368 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020904 B = 0.002618 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.146387 B =10691.663341 C =10942.894792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.193 3.807 4 H 0.003 0.997 5 C -0.536 4.536 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.863 3.137 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.251 1.251 13 N -0.675 5.675 14 C 0.031 3.969 15 C 0.140 3.860 16 H 0.120 0.880 17 O -0.548 6.548 18 C -0.051 4.051 19 C -0.130 4.130 20 C -0.022 4.022 21 C -0.666 4.666 22 S 2.503 3.497 23 C -0.650 4.650 24 O -0.939 6.939 25 O -0.939 6.939 26 C -0.021 4.021 27 C -0.134 4.134 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.264 0.736 34 H 0.346 0.654 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.371 0.629 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.142 0.858 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.797 13.162 10.421 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C 0.084 3.916 4 H 0.020 0.980 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.690 3.310 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.175 1.175 13 N -0.307 5.307 14 C -0.100 4.100 15 C 0.081 3.919 16 H 0.137 0.863 17 O -0.353 6.353 18 C -0.052 4.052 19 C -0.148 4.148 20 C -0.041 4.041 21 C -0.753 4.753 22 S 2.682 3.318 23 C -0.800 4.800 24 O -0.936 6.936 25 O -0.936 6.936 26 C -0.040 4.040 27 C -0.152 4.152 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.165 0.835 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.219 0.781 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.517 12.143 10.289 26.764 hybrid contribution 0.617 0.793 -1.310 1.651 sum -20.901 12.936 8.979 26.168 Atomic orbital electron populations 1.21879 0.98713 0.99569 1.00434 1.21862 0.92609 0.99348 1.00911 1.19458 0.95535 0.90782 0.85853 0.97970 1.21216 0.89402 1.42728 1.04016 0.90583 1.24897 0.94762 0.93998 0.98790 1.69986 1.11698 1.42338 1.28433 0.87204 0.82335 0.77878 0.83621 1.20834 1.21232 1.17479 1.60492 1.07903 1.32747 1.29529 1.22694 0.96985 0.96283 0.93998 1.21160 0.82440 0.90986 0.97320 0.86256 1.86672 1.56425 1.41557 1.50637 1.21130 0.96709 0.94623 0.92699 1.21189 0.91658 1.00703 1.01295 1.20926 0.99282 0.91693 0.92224 1.30452 1.18289 1.09131 1.17458 1.05060 0.74414 0.75203 0.77086 1.30228 1.11931 1.14799 1.23036 1.93587 1.56770 1.58408 1.84848 1.93591 1.84146 1.63748 1.52103 1.20885 0.90830 0.99705 0.92555 1.21064 0.98842 0.94582 1.00761 0.94530 0.92779 0.94449 0.93147 0.92167 0.92584 0.83480 0.90317 0.95548 0.78148 0.84591 0.84046 0.84962 0.85080 0.84960 0.84071 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.74 37.16 0.32 -2.34 16 2 C -0.11 -2.36 4.86 -26.73 -0.13 -2.49 16 3 C 0.19 4.37 1.75 -68.86 -0.12 4.25 16 4 H 0.00 0.06 6.35 -51.93 -0.33 -0.27 16 5 C -0.54 -14.54 9.03 -34.44 -0.31 -14.85 16 6 H 0.08 2.23 7.67 -52.49 -0.40 1.83 16 7 C 0.08 2.22 5.31 -17.82 -0.09 2.13 16 8 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 9 Si 0.86 20.92 25.76 -169.99 -4.38 16.54 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.25 -5.75 5.49 56.52 0.31 -5.44 16 13 N -0.67 -12.97 6.09 -107.95 -0.66 -13.63 16 14 C 0.03 0.48 4.68 -3.83 -0.02 0.46 16 15 C 0.14 1.77 3.45 -27.88 -0.10 1.67 16 16 H 0.12 1.53 8.00 -51.93 -0.42 1.12 16 17 O -0.55 -7.05 12.79 -35.23 -0.45 -7.50 16 18 C -0.05 -0.56 4.97 -104.62 -0.52 -1.08 16 19 C -0.13 -1.30 9.67 -39.58 -0.38 -1.68 16 20 C -0.02 -0.21 9.47 -39.58 -0.37 -0.58 16 21 C -0.67 -5.95 5.66 -39.58 -0.22 -6.17 16 22 S 2.50 18.64 5.80 -107.50 -0.62 18.02 16 23 C -0.65 -2.05 10.80 101.05 1.09 -0.96 16 24 O -0.94 -10.04 17.13 -57.54 -0.99 -11.03 16 25 O -0.94 -10.11 17.12 -57.54 -0.99 -11.10 16 26 C -0.02 -0.19 9.47 -39.58 -0.37 -0.57 16 27 C -0.13 -1.34 9.32 -39.58 -0.37 -1.71 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.16 4.88 -51.93 -0.25 0.90 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.35 6.93 7.59 -39.29 -0.30 6.64 16 35 H 0.08 1.23 6.01 -51.93 -0.31 0.92 16 36 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.37 3.64 7.50 45.56 0.34 3.99 16 38 H 0.14 1.14 8.04 -52.49 -0.42 0.72 16 39 H 0.14 1.02 7.57 -52.49 -0.40 0.62 16 40 H 0.13 0.25 8.14 -51.92 -0.42 -0.18 16 41 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 42 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 43 H 0.14 1.05 7.56 -52.49 -0.40 0.65 16 44 H 0.13 1.07 6.78 -52.49 -0.36 0.72 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -35.91 365.44 -9.17 -45.08 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -5.77 Total: 7.81 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -1.60 Total: -23.91 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.12 Total: -39.42 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -2.42 Total: -29.63 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.38 Total: 16.54 kcal Atomic # 16 Polarization: 18.64 SS G_CDS: -0.62 Total: 18.02 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.91 -9.17 -45.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.714 kcal (2) G-P(sol) polarization free energy of solvation -35.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds