Wall clock time and date at job start Tue Mar 31 2020 15:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46880 * 2 1 4 4 H 1.08999 * 109.47253 * 305.83859 * 3 2 1 5 5 C 1.50701 * 109.47291 * 185.84028 * 3 2 1 6 6 H 1.07997 * 120.00014 * 243.41790 * 5 3 2 7 7 C 1.37878 * 119.99936 * 63.41356 * 5 3 2 8 8 N 1.31518 * 120.00225 * 196.04910 * 7 5 3 9 9 Si 1.86798 * 120.00040 * 16.04337 * 7 5 3 10 10 H 1.48505 * 109.47056 * 92.71200 * 9 7 5 11 11 H 1.48495 * 109.47251 * 212.71398 * 9 7 5 12 12 H 1.48494 * 109.47278 * 332.71541 * 9 7 5 13 13 N 1.46905 * 109.47435 * 65.83879 * 3 2 1 14 14 C 1.46896 * 111.00161 * 258.59655 * 13 3 2 15 15 C 1.52996 * 109.47329 * 175.23324 * 14 13 3 16 16 H 1.08997 * 109.46995 * 305.00211 * 15 14 13 17 17 O 1.42901 * 109.47296 * 64.99907 * 15 14 13 18 18 C 1.50701 * 109.47266 * 185.00249 * 15 14 13 19 19 C 1.38241 * 119.99975 * 99.99900 * 18 15 14 20 20 C 1.38228 * 119.99756 * 180.02562 * 19 18 15 21 21 C 1.38240 * 120.00077 * 359.97438 * 20 19 18 22 22 S 1.76198 * 119.99847 * 179.97438 * 21 20 19 23 23 C 1.81402 * 104.44991 * 90.00142 * 22 21 20 24 24 O 1.42095 * 104.27964 * 333.92697 * 22 21 20 25 25 O 1.42105 * 104.27898 * 206.07497 * 22 21 20 26 26 C 1.38237 * 120.00009 * 0.25529 * 21 20 19 27 27 C 1.38231 * 119.99961 * 359.46870 * 26 21 20 28 28 H 1.09005 * 109.47122 * 175.85611 * 1 2 3 29 29 H 1.08993 * 109.47413 * 295.85501 * 1 2 3 30 30 H 1.09003 * 109.46680 * 55.85946 * 1 2 3 31 31 H 1.08999 * 109.47524 * 239.99847 * 2 1 3 32 32 H 1.09003 * 109.46793 * 119.99491 * 2 1 3 33 33 H 0.96988 * 120.00264 * 179.97438 * 8 7 5 34 34 H 1.00903 * 110.99573 * 134.64256 * 13 3 2 35 35 H 1.09006 * 109.47114 * 55.23245 * 14 13 3 36 36 H 1.09008 * 109.47226 * 295.23758 * 14 13 3 37 37 H 0.96702 * 113.99597 * 60.00243 * 17 15 14 38 38 H 1.07992 * 119.99870 * 359.97438 * 19 18 15 39 39 H 1.08002 * 119.99958 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.46978 * 299.99477 * 23 22 21 41 41 H 1.09003 * 109.47148 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.46928 * 59.99898 * 23 22 21 43 43 H 1.07999 * 119.99791 * 179.72808 * 26 21 20 44 44 H 1.07998 * 120.00295 * 180.27174 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5938 1.9856 -0.8331 5 6 3.5400 1.4450 -0.1446 6 1 4.1584 1.8359 0.6499 7 6 4.1229 0.9483 -1.2911 8 7 5.4049 0.6550 -1.3031 9 14 3.0918 0.6918 -2.8274 10 1 3.1661 1.9043 -3.6816 11 1 3.6099 -0.4776 -3.5818 12 1 1.6796 0.4449 -2.4403 13 7 1.6687 2.0932 1.2637 14 6 0.4993 2.9639 1.0838 15 6 0.0711 3.5292 2.4395 16 1 -0.1006 2.7095 3.1371 17 8 1.1009 4.3795 2.9478 18 6 -1.1995 4.3225 2.2742 19 6 -2.4160 3.7566 2.6072 20 6 -3.5815 4.4841 2.4550 21 6 -3.5305 5.7778 1.9705 22 16 -5.0162 6.7049 1.7760 23 6 -5.2333 7.5508 3.3659 24 8 -6.0232 5.7190 1.5941 25 8 -4.7135 7.6408 0.7504 26 6 -2.3144 6.3420 1.6331 27 6 -1.1484 5.6165 1.7906 28 1 -0.3634 -1.0250 -0.0743 29 1 -0.3634 0.4481 0.9247 30 1 -0.3633 0.5768 -0.8506 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8149 0.3053 -2.1095 34 1 2.4471 2.6078 1.6477 35 1 -0.3205 2.3873 0.6552 36 1 0.7565 3.7837 0.4130 37 1 1.3068 5.1324 2.3769 38 1 -2.4559 2.7458 2.9853 39 1 -4.5319 4.0418 2.7148 40 1 -5.3164 6.8114 4.1625 41 1 -6.1397 8.1555 3.3350 42 1 -4.3740 8.1942 3.5555 43 1 -2.2751 7.3512 1.2504 44 1 -0.1979 6.0589 1.5311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846996260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:57 Heat of formation + Delta-G solvation = -121.669959 kcal Electronic energy + Delta-G solvation = -25651.162968 eV Core-core repulsion = 21887.663437 eV Total energy + Delta-G solvation = -3763.499531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83092 -38.74610 -38.12934 -37.40201 -36.95685 -34.47417 -33.33715 -32.55261 -32.03062 -30.30167 -29.89040 -27.67676 -24.76512 -23.98016 -23.76622 -22.30294 -21.41366 -20.02455 -19.17013 -18.94785 -17.86341 -17.46563 -17.16528 -17.11592 -16.47638 -16.08189 -15.81645 -15.57565 -15.56252 -14.90661 -14.76901 -14.44916 -14.41575 -14.20934 -13.99069 -13.91918 -13.83993 -13.75072 -13.35297 -13.13280 -13.03243 -12.95628 -12.68344 -12.65510 -12.48525 -12.17267 -12.13561 -11.99177 -11.76232 -11.64425 -11.33886 -11.13853 -10.99173 -10.60241 -10.15510 -10.04679 -9.12725 -8.35739 -6.34956 -0.84638 -0.23962 0.29615 1.30164 1.34937 1.44626 1.93181 2.31268 2.37070 2.98169 3.04962 3.19908 3.25392 3.47482 3.73340 3.89467 3.92812 4.09203 4.13125 4.16266 4.25550 4.32875 4.44357 4.48874 4.51333 4.59697 4.67898 4.71991 4.82681 4.90005 4.98484 5.01272 5.05654 5.10337 5.18936 5.27588 5.37128 5.45992 5.53322 5.78369 5.81356 5.98825 6.46333 6.62803 6.69692 6.85452 7.30648 8.80693 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020904 B = 0.002618 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.146387 B =10691.663341 C =10942.894792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.198 3.802 4 H 0.001 0.999 5 C -0.539 4.539 6 H 0.038 0.962 7 C 0.024 3.976 8 N -0.937 5.937 9 Si 0.925 3.075 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.228 1.228 13 N -0.674 5.674 14 C 0.032 3.968 15 C 0.155 3.845 16 H 0.117 0.883 17 O -0.561 6.561 18 C -0.066 4.066 19 C -0.136 4.136 20 C -0.031 4.031 21 C -0.666 4.666 22 S 2.509 3.491 23 C -0.624 4.624 24 O -0.977 6.977 25 O -0.979 6.979 26 C -0.031 4.031 27 C -0.142 4.142 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.266 0.734 34 H 0.339 0.661 35 H 0.082 0.918 36 H 0.025 0.975 37 H 0.383 0.617 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.840 14.123 11.120 29.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.088 3.912 4 H 0.018 0.982 5 C -0.577 4.577 6 H 0.056 0.944 7 C -0.176 4.176 8 N -0.576 5.576 9 Si 0.749 3.251 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.150 1.150 13 N -0.305 5.305 14 C -0.098 4.098 15 C 0.095 3.905 16 H 0.135 0.865 17 O -0.368 6.368 18 C -0.067 4.067 19 C -0.155 4.155 20 C -0.049 4.049 21 C -0.752 4.752 22 S 2.692 3.308 23 C -0.778 4.778 24 O -0.975 6.975 25 O -0.976 6.976 26 C -0.050 4.050 27 C -0.161 4.161 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.043 0.957 37 H 0.232 0.768 38 H 0.167 0.833 39 H 0.177 0.823 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.174 0.826 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.571 13.091 10.964 29.922 hybrid contribution 1.568 0.606 -1.375 2.171 sum -23.003 13.697 9.589 28.438 Atomic orbital electron populations 1.21781 0.95362 1.01215 1.01337 1.21781 0.95589 0.97847 0.99673 1.19314 0.92406 0.92107 0.87323 0.98157 1.21544 0.91804 1.41503 1.02815 0.94414 1.25734 0.95811 0.93966 1.02043 1.70118 1.13780 1.44319 1.29425 0.86201 0.81830 0.77713 0.79348 1.20526 1.21178 1.15040 1.60460 1.08655 1.33855 1.27559 1.22774 0.95269 0.95683 0.96091 1.20891 0.83141 0.91163 0.95262 0.86534 1.86638 1.56765 1.42169 1.51256 1.20968 0.96118 0.95069 0.94575 1.21416 0.91556 1.01458 1.01071 1.21193 0.99789 0.91808 0.92136 1.30705 1.18772 1.09359 1.16345 1.04781 0.73084 0.74388 0.78534 1.30028 1.13996 1.15092 1.18644 1.93537 1.57467 1.59990 1.86456 1.93539 1.84354 1.64115 1.55577 1.21135 0.90757 1.00487 0.92618 1.21289 0.99826 0.94435 1.00524 0.92474 0.91472 0.94037 0.94549 0.93377 0.92500 0.84317 0.89958 0.95672 0.76763 0.83303 0.82334 0.82808 0.82839 0.82928 0.82629 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 8.74 71.98 0.63 -3.99 16 2 C -0.11 -4.66 4.86 30.59 0.15 -4.51 16 3 C 0.20 8.94 1.75 44.17 0.08 9.01 16 4 H 0.00 0.04 6.35 -2.39 -0.02 0.02 16 5 C -0.54 -30.03 9.03 25.60 0.23 -29.80 16 6 H 0.04 2.33 7.67 -2.91 -0.02 2.31 16 7 C 0.02 1.35 5.31 84.65 0.45 1.80 16 8 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16 9 Si 0.93 43.29 25.76 68.60 1.77 45.05 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.23 -9.71 5.49 99.48 0.55 -9.16 16 13 N -0.67 -25.79 6.09 -495.44 -3.02 -28.81 16 14 C 0.03 0.95 4.68 86.30 0.40 1.35 16 15 C 0.15 3.73 3.45 29.85 0.10 3.83 16 16 H 0.12 2.85 8.00 -2.39 -0.02 2.83 16 17 O -0.56 -14.03 12.79 -148.98 -1.91 -15.94 16 18 C -0.07 -1.36 4.97 -19.86 -0.10 -1.46 16 19 C -0.14 -2.48 9.67 22.27 0.22 -2.26 16 20 C -0.03 -0.50 9.47 22.27 0.21 -0.29 16 21 C -0.67 -10.66 5.66 22.27 0.13 -10.54 16 22 S 2.51 32.85 5.80 -56.49 -0.33 32.53 16 23 C -0.62 -1.38 10.80 113.37 1.22 -0.15 16 24 O -0.98 -19.73 17.13 -127.65 -2.19 -21.91 16 25 O -0.98 -20.09 17.12 -127.65 -2.19 -22.28 16 26 C -0.03 -0.53 9.47 22.27 0.21 -0.32 16 27 C -0.14 -2.63 9.32 22.27 0.21 -2.43 16 28 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.07 2.03 6.66 -2.39 -0.02 2.02 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.61 4.88 -2.39 -0.01 1.60 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.27 15.40 8.31 -92.72 -0.77 14.63 16 34 H 0.34 13.85 7.59 -89.69 -0.68 13.17 16 35 H 0.08 2.41 6.01 -2.38 -0.01 2.39 16 36 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.38 7.25 7.50 -74.06 -0.56 6.69 16 38 H 0.15 2.19 8.04 -2.91 -0.02 2.17 16 39 H 0.16 1.95 7.57 -2.91 -0.02 1.92 16 40 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.16 2.06 7.56 -2.91 -0.02 2.04 16 44 H 0.14 2.15 6.78 -2.91 -0.02 2.13 16 Total: -1.00 -79.59 365.44 -3.78 -83.37 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.37 Total: 25.30 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 4.14 Total: -39.75 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.72 Total: -86.38 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -6.28 Total: -60.13 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.77 Total: 45.05 kcal Atomic # 16 Polarization: 32.85 SS G_CDS: -0.33 Total: 32.53 kcal Total: -79.59 -3.78 -83.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.297 kcal (2) G-P(sol) polarization free energy of solvation -79.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds