Wall clock time and date at job start Tue Mar 31 2020 14:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.53000 * 109.47415 * 240.00182 * 2 1 3 5 5 C 1.50699 * 109.46978 * 59.99616 * 4 2 1 6 6 H 1.07998 * 120.00139 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00095 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99895 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47136 * 90.00173 * 9 7 5 11 11 H 1.48504 * 109.46915 * 210.00252 * 9 7 5 12 12 H 1.48503 * 109.47098 * 330.00107 * 9 7 5 13 13 C 1.53001 * 109.47124 * 119.99716 * 2 1 3 14 14 N 1.46499 * 109.47073 * 300.00146 * 13 2 1 15 15 C 1.34774 * 119.99899 * 179.97438 * 14 13 2 16 16 O 1.21593 * 120.00257 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00548 * 180.02562 * 15 14 13 18 18 N 1.40109 * 119.99481 * 0.02562 * 17 15 14 19 19 C 1.38466 * 119.99709 * 180.27739 * 18 17 15 20 20 N 1.32476 * 119.20383 * 359.45405 * 19 18 17 21 21 C 1.32285 * 120.75090 * 179.76157 * 20 19 18 22 22 C 1.38695 * 119.18386 * 0.49920 * 21 20 19 23 23 Cl 1.73594 * 120.73555 * 179.72688 * 22 21 20 24 24 C 1.38700 * 118.53506 * 359.75585 * 22 21 20 25 25 N 1.32291 * 119.17853 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47089 * 299.99981 * 1 2 3 27 27 H 1.09005 * 109.47089 * 60.00233 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47359 * 300.00345 * 3 2 1 31 31 H 1.09007 * 109.47356 * 59.99868 * 3 2 1 32 32 H 1.09000 * 109.46966 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.46807 * 299.99967 * 4 2 1 34 34 H 0.96996 * 120.00083 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46837 * 180.02562 * 13 2 1 36 36 H 1.08994 * 109.47075 * 60.00423 * 13 2 1 37 37 H 0.96996 * 119.99958 * 0.02562 * 14 13 2 38 38 H 0.97000 * 120.00718 * 180.02562 * 17 15 14 39 39 H 0.97001 * 119.99794 * 359.97438 * 18 17 15 40 40 H 1.08004 * 120.40661 * 180.25117 * 21 20 19 41 41 H 1.07991 * 120.41186 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8713 -0.4815 -3.7319 8 7 2.6275 -1.5507 -3.8526 9 14 1.2492 0.3994 -5.2572 10 1 2.2274 1.4412 -5.6607 11 1 1.0846 -0.5795 -6.3617 12 1 -0.0591 1.0368 -4.9616 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8768 -0.4913 3.6695 16 8 2.5751 -1.4804 3.7812 17 7 1.4272 0.1437 4.7700 18 7 0.6212 1.2825 4.6414 19 6 0.1640 1.9383 5.7720 20 7 0.4891 1.4689 6.9674 21 6 0.0730 2.0739 8.0677 22 6 -0.7209 3.2059 7.9581 23 17 -1.2952 4.0274 9.3755 24 6 -1.0464 3.6668 6.6911 25 7 -0.5922 3.0170 5.6320 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2494 33 1 1.6767 -1.7489 -1.2492 34 1 2.8624 -1.8817 -4.7335 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7488 1.2493 37 1 0.9937 0.7579 2.3563 38 1 1.6615 -0.1876 5.6510 39 1 0.3872 1.6141 3.7604 40 1 0.3448 1.6888 9.0394 41 1 -1.6630 4.5451 6.5705 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856904619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:48 Heat of formation + Delta-G solvation = 32.999176 kcal Electronic energy + Delta-G solvation = -24781.083637 eV Core-core repulsion = 20950.999765 eV Total energy + Delta-G solvation = -3830.083872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.24632 -41.34648 -38.86959 -37.98046 -37.36532 -35.27585 -34.95253 -33.99550 -33.15392 -30.26327 -29.06443 -27.96334 -27.64138 -25.95705 -24.91032 -24.61949 -22.23228 -20.87772 -20.08507 -19.50413 -18.45849 -18.32188 -17.65769 -17.12227 -17.03803 -16.63105 -16.37982 -16.17406 -15.67158 -15.47063 -15.33272 -14.74355 -14.63009 -14.36451 -14.03945 -13.92855 -13.68803 -12.88826 -12.72531 -12.66743 -12.62417 -12.54402 -12.33012 -12.32614 -12.22835 -12.11072 -11.97593 -11.79664 -11.54232 -11.00569 -10.85471 -10.66539 -10.49503 -10.32151 -10.18582 -8.89400 -8.12373 -6.19684 -0.19109 -0.03807 0.46066 1.08079 1.43904 1.44203 1.54292 1.77801 1.87232 2.45574 2.60831 2.83133 3.14288 3.22322 3.48219 3.86971 3.91612 4.02618 4.08839 4.21261 4.63594 4.66934 4.71929 4.72356 4.88152 4.95349 5.06839 5.13127 5.22311 5.29804 5.43788 5.52340 5.53960 5.58074 5.63281 5.76928 5.81604 5.91894 6.12259 6.32434 6.66012 6.95498 7.09617 7.30897 7.47851 8.99920 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.024446 B = 0.002096 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.097411 B =13355.939857 C =14304.666069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.957 3.043 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.259 1.259 13 C 0.157 3.843 14 N -0.720 5.720 15 C 0.713 3.287 16 O -0.611 6.611 17 N -0.511 5.511 18 N -0.489 5.489 19 C 0.559 3.441 20 N -0.574 5.574 21 C 0.213 3.787 22 C -0.206 4.206 23 Cl -0.033 7.033 24 C 0.216 3.784 25 N -0.560 5.560 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.066 0.934 32 H -0.012 1.012 33 H -0.011 1.011 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.404 0.596 38 H 0.445 0.555 39 H 0.443 0.557 40 H 0.204 0.796 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 13.869 26.655 31.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.783 3.217 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.183 1.183 13 C 0.032 3.968 14 N -0.377 5.377 15 C 0.412 3.588 16 O -0.488 6.488 17 N -0.267 5.267 18 N -0.226 5.226 19 C 0.202 3.798 20 N -0.298 5.298 21 C 0.045 3.955 22 C -0.241 4.241 23 Cl -0.005 7.005 24 C 0.048 3.952 25 N -0.284 5.284 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.242 0.758 38 H 0.292 0.708 39 H 0.290 0.710 40 H 0.220 0.780 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -8.793 12.459 25.680 29.867 hybrid contribution -0.419 0.632 -0.388 0.852 sum -9.212 13.091 25.293 29.932 Atomic orbital electron populations 1.21712 0.93600 1.01138 1.01576 1.20719 0.96682 0.96308 0.92734 1.21713 1.00111 0.94617 1.01597 1.18969 0.94452 0.94297 0.92077 1.21589 1.30350 1.12028 0.91025 0.90885 1.25940 0.95776 0.95889 1.02698 1.70115 1.38791 1.24927 1.24027 0.85556 0.79168 0.78082 0.78885 1.20255 1.21745 1.18349 1.21223 0.98073 0.95256 0.82215 1.45071 1.55806 1.33130 1.03734 1.15725 0.80258 0.82255 0.80537 1.91022 1.44581 1.28471 1.84687 1.44262 1.51277 1.21837 1.09333 1.42459 1.51364 1.22320 1.06424 1.19053 0.88296 0.86908 0.85548 1.67924 1.29104 1.34968 0.97820 1.23419 0.86775 0.87770 0.97498 1.22428 1.08841 1.01475 0.91404 1.98395 1.87567 1.77510 1.37038 1.23477 0.90871 0.96224 0.84611 1.67906 1.16203 1.09252 1.35019 0.91484 0.92409 0.94206 0.94210 0.92374 0.91483 0.99324 0.99307 0.93238 0.92946 0.92944 0.75827 0.70784 0.71000 0.77953 0.77508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 2 C -0.06 -2.30 0.54 -52.18 -0.03 -2.33 16 3 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 4 C 0.04 1.96 4.04 29.85 0.12 2.08 16 5 C -0.51 -26.79 7.65 25.60 0.20 -26.60 16 6 H 0.07 3.56 5.68 -2.91 -0.02 3.55 16 7 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 8 N -0.94 -56.35 13.29 21.45 0.28 -56.06 16 9 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 13 C 0.16 5.33 4.56 86.38 0.39 5.72 16 14 N -0.72 -18.94 4.92 -478.54 -2.36 -21.29 16 15 C 0.71 20.38 8.68 179.06 1.55 21.93 16 16 O -0.61 -22.87 17.18 -4.01 -0.07 -22.94 16 17 N -0.51 -11.16 6.28 -184.75 -1.16 -12.32 16 18 N -0.49 -8.76 6.42 -59.73 -0.38 -9.15 16 19 C 0.56 9.96 8.54 261.47 2.23 12.19 16 20 N -0.57 -9.56 9.38 -197.88 -1.86 -11.42 16 21 C 0.21 2.43 11.12 84.73 0.94 3.37 16 22 C -0.21 -2.10 6.36 22.49 0.14 -1.96 16 23 Cl -0.03 -0.28 29.01 -2.72 -0.08 -0.36 16 24 C 0.22 2.33 11.12 84.73 0.94 3.27 16 25 N -0.56 -8.79 10.46 -197.88 -2.07 -10.86 16 26 H 0.07 1.58 6.86 -2.39 -0.02 1.57 16 27 H 0.06 1.99 6.62 -2.38 -0.02 1.98 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 31 H 0.07 1.58 6.86 -2.38 -0.02 1.57 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.40 8.26 4.08 -92.71 -0.38 7.88 16 38 H 0.45 9.47 8.01 -213.31 -1.71 7.76 16 39 H 0.44 6.74 6.82 -213.31 -1.45 5.29 16 40 H 0.20 1.11 8.06 -2.91 -0.02 1.08 16 41 H 0.21 0.92 8.06 -2.92 -0.02 0.90 16 Total: -1.00 -69.62 356.78 0.02 -69.60 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -2.43 Total: 18.61 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 8.12 Total: 11.10 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -7.54 Total: -121.11 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.07 Total: -22.94 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -69.62 0.02 -69.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856904619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.594 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds