Wall clock time and date at job start Tue Mar 31 2020 14:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.41610 * 113.99807 * 2 1 4 4 C 1.46496 * 119.99781 * 269.99932 * 3 2 1 5 5 C 1.53005 * 109.47169 * 275.95290 * 4 3 2 6 6 C 1.53002 * 109.47002 * 60.00194 * 5 4 3 7 7 C 1.52995 * 109.47291 * 180.02562 * 5 4 3 8 8 C 1.53005 * 109.46910 * 300.00265 * 5 4 3 9 9 S 1.65600 * 119.99991 * 90.00157 * 3 2 1 10 10 O 1.42092 * 106.40474 * 166.69610 * 9 3 2 11 11 O 1.42102 * 106.40167 * 33.77285 * 9 3 2 12 12 C 1.76207 * 107.21475 * 280.23670 * 9 3 2 13 13 C 1.37640 * 120.12690 * 113.48266 * 12 9 3 14 14 C 1.38613 * 120.24616 * 180.31756 * 13 12 9 15 15 C 1.38667 * 120.50017 * 359.67299 * 14 13 12 16 16 C 1.37596 * 120.24461 * 0.02562 * 15 14 13 17 17 C 1.40693 * 120.12613 * 293.17287 * 12 9 3 18 18 C 1.41397 * 120.24571 * 359.97438 * 17 12 9 19 19 H 1.08005 * 119.99884 * 328.33898 * 18 17 12 20 20 C 1.39940 * 120.00110 * 148.33583 * 18 17 12 21 21 N 1.30824 * 120.00404 * 336.80987 * 20 18 17 22 22 Si 1.86808 * 120.00012 * 156.80729 * 20 18 17 23 23 H 1.48499 * 109.47098 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47040 * 300.00389 * 22 20 18 25 25 H 1.48502 * 109.46950 * 60.00080 * 22 20 18 26 26 H 1.08996 * 109.47460 * 300.00189 * 1 2 3 27 27 H 1.09006 * 109.47353 * 59.99988 * 1 2 3 28 28 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47631 * 35.95450 * 4 3 2 30 30 H 1.08998 * 109.46859 * 155.95778 * 4 3 2 31 31 H 1.08994 * 109.46955 * 60.00356 * 6 5 4 32 32 H 1.08999 * 109.46955 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46786 * 299.99978 * 6 5 4 34 34 H 1.08992 * 109.47379 * 59.99809 * 7 5 4 35 35 H 1.08999 * 109.47166 * 179.97438 * 7 5 4 36 36 H 1.09004 * 109.47095 * 299.99842 * 7 5 4 37 37 H 1.08998 * 109.47099 * 60.00284 * 8 5 4 38 38 H 1.09008 * 109.47118 * 179.97438 * 8 5 4 39 39 H 1.08992 * 109.47112 * 299.99794 * 8 5 4 40 40 H 1.07997 * 119.88065 * 0.02562 * 13 12 9 41 41 H 1.07996 * 119.74986 * 179.69404 * 14 13 12 42 42 H 1.07999 * 119.87172 * 180.02562 * 15 14 13 43 43 H 1.08005 * 120.11965 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99792 * 354.68172 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2937 0.0000 4 6 2.3028 1.9628 -1.2687 5 6 3.6645 1.4939 -1.7852 6 6 3.6338 -0.0204 -2.0022 7 6 3.9760 2.1931 -3.1099 8 6 4.7458 1.8403 -0.7596 9 16 2.3417 2.0501 1.4341 10 8 3.1770 3.1553 1.1184 11 8 2.7165 1.0287 2.3482 12 6 0.8292 2.7253 2.0354 13 6 0.2622 2.2315 3.1883 14 6 -0.9309 2.7563 3.6599 15 6 -1.5631 3.7874 2.9816 16 6 -1.0112 4.3006 1.8304 17 6 0.1999 3.7756 1.3423 18 6 0.7768 4.2957 0.1608 19 1 1.8503 4.3037 0.0422 20 6 -0.0432 4.8000 -0.8549 21 7 -1.2870 4.4053 -0.9481 22 14 0.6383 6.0368 -2.0779 23 1 -0.4234 6.4124 -3.0458 24 1 1.0975 7.2485 -1.3526 25 1 1.7825 5.4330 -2.8070 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.5325 1.7161 -1.9993 30 1 2.3247 3.0415 -1.1141 31 1 2.8635 -0.2671 -2.7328 32 1 4.6040 -0.3545 -2.3697 33 1 3.4121 -0.5182 -1.0581 34 1 3.9980 3.2718 -2.9550 35 1 4.9463 1.8594 -3.4776 36 1 3.2057 1.9467 -3.8407 37 1 4.5242 1.3424 0.1843 38 1 5.7160 1.5058 -1.1273 39 1 4.7677 2.9190 -0.6051 40 1 0.7462 1.4290 3.7249 41 1 -1.3712 2.3595 4.5626 42 1 -2.4922 4.1890 3.3583 43 1 -1.5051 5.1039 1.3039 44 1 -1.6194 3.7070 -0.3627 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867263211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:24 Heat of formation + Delta-G solvation = -65.956643 kcal Electronic energy + Delta-G solvation = -28787.031392 eV Core-core repulsion = 25025.947772 eV Total energy + Delta-G solvation = -3761.083620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.16101 -37.90720 -36.79193 -35.92984 -35.00872 -34.20428 -31.40581 -30.32765 -29.59681 -27.01508 -26.90041 -26.47586 -25.50183 -24.46138 -21.91349 -21.33562 -19.07010 -18.65280 -18.38486 -17.34474 -16.41433 -16.35055 -15.29749 -14.97903 -14.79792 -14.20392 -14.10041 -14.00554 -13.96183 -13.77978 -13.43251 -13.24706 -12.82010 -12.49134 -12.28603 -12.13291 -11.77457 -11.64802 -11.55535 -11.38963 -11.29561 -11.24009 -11.22897 -11.08132 -10.93368 -10.89367 -10.59574 -10.55965 -10.50364 -10.22971 -9.95545 -9.70383 -9.45085 -9.27371 -8.69316 -8.30260 -7.91755 -7.56102 -4.98235 1.09348 2.10230 2.54253 3.00083 3.02366 3.08486 3.21689 3.76802 4.19786 4.44798 4.63284 5.04266 5.10827 5.14507 5.22164 5.38545 5.68614 5.71931 5.78279 5.81978 5.83422 5.88743 5.95680 5.98506 6.06811 6.10600 6.18162 6.20750 6.24055 6.28749 6.42494 6.48426 6.50111 6.53542 6.74059 6.77972 6.82414 7.04642 7.18436 7.26249 7.46046 7.51455 7.56893 7.71076 7.86957 8.27227 8.46772 9.67612 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.008364 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.367589 B = 3346.709334 C = 4772.699032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.120 6.120 3 N -0.849 5.849 4 C 0.120 3.880 5 C -0.088 4.088 6 C -0.135 4.135 7 C -0.139 4.139 8 C -0.144 4.144 9 S 2.705 3.295 10 O -0.950 6.950 11 O -0.979 6.979 12 C -0.787 4.787 13 C 0.011 3.989 14 C -0.257 4.257 15 C -0.056 4.056 16 C -0.206 4.206 17 C 0.173 3.827 18 C -0.534 4.534 19 H 0.118 0.882 20 C 0.045 3.955 21 N -0.776 5.776 22 Si 1.053 2.947 23 H -0.271 1.271 24 H -0.268 1.268 25 H -0.264 1.264 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.975 -3.681 -4.436 6.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.128 6.128 3 N -0.721 5.721 4 C -0.005 4.005 5 C -0.090 4.090 6 C -0.192 4.192 7 C -0.197 4.197 8 C -0.201 4.201 9 S 2.803 3.197 10 O -0.941 6.941 11 O -0.970 6.970 12 C -0.882 4.882 13 C -0.009 4.009 14 C -0.277 4.277 15 C -0.075 4.075 16 C -0.225 4.225 17 C 0.168 3.832 18 C -0.561 4.561 19 H 0.135 0.865 20 C -0.179 4.179 21 N -0.397 5.397 22 Si 0.875 3.125 23 H -0.195 1.195 24 H -0.193 1.193 25 H -0.189 1.189 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.456 -2.934 -5.393 7.046 hybrid contribution -1.062 -0.782 1.461 1.968 sum 2.395 -3.716 -3.932 5.916 Atomic orbital electron populations 1.23390 0.82890 1.02805 1.02212 1.90541 1.19082 1.06524 1.96682 1.60432 1.72332 1.17664 1.21684 1.21965 0.95198 0.98034 0.85311 1.20987 0.95986 0.96364 0.95634 1.21825 1.00315 0.94757 1.02351 1.21808 1.01150 1.00742 0.95963 1.21993 0.97452 1.03075 0.97587 1.01377 0.74746 0.72501 0.71076 1.93526 1.65735 1.51583 1.83256 1.93452 1.82841 1.58838 1.61870 1.29932 1.28885 1.16139 1.13207 1.20344 0.93264 0.94810 0.92484 1.20499 0.99232 1.04591 1.03404 1.20876 0.97149 0.94890 0.94564 1.21354 0.99863 1.02976 0.98352 1.17023 0.89896 0.86031 0.90251 1.21494 0.99063 1.34810 1.00685 0.86453 1.27118 0.93325 0.98003 0.99489 1.70487 1.15213 1.20692 1.33278 0.83794 0.76852 0.76221 0.75621 1.19530 1.19312 1.18910 0.92503 0.92726 0.88558 0.90553 0.86753 0.93227 0.93614 0.91326 0.92175 0.92608 0.92677 0.94216 0.92919 0.90455 0.87203 0.88307 0.88468 0.87208 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.23 11.47 101.05 1.16 0.93 16 2 O -0.12 -2.21 9.70 -16.86 -0.16 -2.38 16 3 N -0.85 -16.60 2.52 -10.62 -0.03 -16.63 16 4 C 0.12 2.14 4.39 -4.04 -0.02 2.12 16 5 C -0.09 -1.37 0.84 -154.50 -0.13 -1.50 16 6 C -0.14 -1.95 8.03 37.16 0.30 -1.65 16 7 C -0.14 -1.82 8.47 37.16 0.31 -1.50 16 8 C -0.14 -2.38 7.02 37.16 0.26 -2.11 16 9 S 2.71 60.26 3.99 -107.50 -0.43 59.83 16 10 O -0.95 -21.85 11.95 -57.17 -0.68 -22.54 16 11 O -0.98 -23.40 16.78 -61.26 -1.03 -24.43 16 12 C -0.79 -18.31 5.36 -38.87 -0.21 -18.52 16 13 C 0.01 0.24 9.54 -39.66 -0.38 -0.14 16 14 C -0.26 -5.36 10.05 -39.28 -0.39 -5.76 16 15 C -0.06 -1.18 10.02 -39.66 -0.40 -1.58 16 16 C -0.21 -4.76 7.96 -38.88 -0.31 -5.07 16 17 C 0.17 4.15 5.17 -106.83 -0.55 3.59 16 18 C -0.53 -12.45 6.58 -37.74 -0.25 -12.69 16 19 H 0.12 2.75 4.08 -52.48 -0.21 2.54 16 20 C 0.05 1.01 4.95 -17.34 -0.09 0.92 16 21 N -0.78 -17.88 12.52 55.55 0.70 -17.19 16 22 Si 1.05 19.31 29.99 -169.99 -5.10 14.21 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 24 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 25 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 26 H 0.06 1.02 7.52 -51.93 -0.39 0.63 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.11 2.20 4.56 -51.93 -0.24 1.97 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.11 6.47 -51.93 -0.34 0.77 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.72 6.27 -51.93 -0.33 0.40 16 38 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.08 1.33 7.23 -51.93 -0.38 0.96 16 40 H 0.11 2.30 7.32 -52.49 -0.38 1.92 16 41 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.11 2.56 6.88 -52.48 -0.36 2.20 16 44 H 0.30 7.09 6.76 -40.82 -0.28 6.82 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -26.77 355.11 -8.42 -35.19 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.35 Total: 11.54 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: -0.69 Total: -42.96 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.67 Total: -33.82 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.87 Total: -49.34 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.10 Total: 14.21 kcal Atomic # 16 Polarization: 60.26 SS G_CDS: -0.43 Total: 59.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.77 -8.42 -35.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867263211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.770 kcal (2) G-P(sol) polarization free energy of solvation -26.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds