Wall clock time and date at job start Tue Mar 31 2020 14:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.41610 * 113.99807 * 2 1 4 4 C 1.46496 * 119.99781 * 269.99932 * 3 2 1 5 5 C 1.53005 * 109.47169 * 275.95290 * 4 3 2 6 6 C 1.53002 * 109.47002 * 60.00194 * 5 4 3 7 7 C 1.52995 * 109.47291 * 180.02562 * 5 4 3 8 8 C 1.53005 * 109.46910 * 300.00265 * 5 4 3 9 9 S 1.65600 * 119.99991 * 90.00157 * 3 2 1 10 10 O 1.42092 * 106.40474 * 166.69610 * 9 3 2 11 11 O 1.42102 * 106.40167 * 33.77285 * 9 3 2 12 12 C 1.76207 * 107.21475 * 280.23670 * 9 3 2 13 13 C 1.37640 * 120.12690 * 113.48266 * 12 9 3 14 14 C 1.38613 * 120.24616 * 180.31756 * 13 12 9 15 15 C 1.38667 * 120.50017 * 359.67299 * 14 13 12 16 16 C 1.37596 * 120.24461 * 0.02562 * 15 14 13 17 17 C 1.40693 * 120.12613 * 293.17287 * 12 9 3 18 18 C 1.41397 * 120.24571 * 359.97438 * 17 12 9 19 19 H 1.08005 * 119.99884 * 328.33898 * 18 17 12 20 20 C 1.39940 * 120.00110 * 148.33583 * 18 17 12 21 21 N 1.30824 * 120.00404 * 336.80987 * 20 18 17 22 22 Si 1.86808 * 120.00012 * 156.80729 * 20 18 17 23 23 H 1.48499 * 109.47098 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47040 * 300.00389 * 22 20 18 25 25 H 1.48502 * 109.46950 * 60.00080 * 22 20 18 26 26 H 1.08996 * 109.47460 * 300.00189 * 1 2 3 27 27 H 1.09006 * 109.47353 * 59.99988 * 1 2 3 28 28 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47631 * 35.95450 * 4 3 2 30 30 H 1.08998 * 109.46859 * 155.95778 * 4 3 2 31 31 H 1.08994 * 109.46955 * 60.00356 * 6 5 4 32 32 H 1.08999 * 109.46955 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46786 * 299.99978 * 6 5 4 34 34 H 1.08992 * 109.47379 * 59.99809 * 7 5 4 35 35 H 1.08999 * 109.47166 * 179.97438 * 7 5 4 36 36 H 1.09004 * 109.47095 * 299.99842 * 7 5 4 37 37 H 1.08998 * 109.47099 * 60.00284 * 8 5 4 38 38 H 1.09008 * 109.47118 * 179.97438 * 8 5 4 39 39 H 1.08992 * 109.47112 * 299.99794 * 8 5 4 40 40 H 1.07997 * 119.88065 * 0.02562 * 13 12 9 41 41 H 1.07996 * 119.74986 * 179.69404 * 14 13 12 42 42 H 1.07999 * 119.87172 * 180.02562 * 15 14 13 43 43 H 1.08005 * 120.11965 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99792 * 354.68172 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2937 0.0000 4 6 2.3028 1.9628 -1.2687 5 6 3.6645 1.4939 -1.7852 6 6 3.6338 -0.0204 -2.0022 7 6 3.9760 2.1931 -3.1099 8 6 4.7458 1.8403 -0.7596 9 16 2.3417 2.0501 1.4341 10 8 3.1770 3.1553 1.1184 11 8 2.7165 1.0287 2.3482 12 6 0.8292 2.7253 2.0354 13 6 0.2622 2.2315 3.1883 14 6 -0.9309 2.7563 3.6599 15 6 -1.5631 3.7874 2.9816 16 6 -1.0112 4.3006 1.8304 17 6 0.1999 3.7756 1.3423 18 6 0.7768 4.2957 0.1608 19 1 1.8503 4.3037 0.0422 20 6 -0.0432 4.8000 -0.8549 21 7 -1.2870 4.4053 -0.9481 22 14 0.6383 6.0368 -2.0779 23 1 -0.4234 6.4124 -3.0458 24 1 1.0975 7.2485 -1.3526 25 1 1.7825 5.4330 -2.8070 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.5325 1.7161 -1.9993 30 1 2.3247 3.0415 -1.1141 31 1 2.8635 -0.2671 -2.7328 32 1 4.6040 -0.3545 -2.3697 33 1 3.4121 -0.5182 -1.0581 34 1 3.9980 3.2718 -2.9550 35 1 4.9463 1.8594 -3.4776 36 1 3.2057 1.9467 -3.8407 37 1 4.5242 1.3424 0.1843 38 1 5.7160 1.5058 -1.1273 39 1 4.7677 2.9190 -0.6051 40 1 0.7462 1.4290 3.7249 41 1 -1.3712 2.3595 4.5626 42 1 -2.4922 4.1890 3.3583 43 1 -1.5051 5.1039 1.3039 44 1 -1.6194 3.7070 -0.3627 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867263211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:23 Heat of formation + Delta-G solvation = -79.954699 kcal Electronic energy + Delta-G solvation = -28787.638394 eV Core-core repulsion = 25025.947772 eV Total energy + Delta-G solvation = -3761.690621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.73213 -39.43626 -38.46684 -37.44145 -36.77822 -35.91612 -32.85309 -32.04909 -31.32958 -28.20418 -28.14386 -27.75038 -27.21994 -25.88986 -23.63554 -23.06286 -20.63909 -20.17218 -19.92083 -19.03695 -18.08500 -17.85048 -16.86683 -16.64327 -16.40058 -15.72492 -15.60999 -15.49427 -15.28361 -15.19711 -15.05861 -14.57641 -14.55149 -14.12902 -13.70197 -13.54308 -13.27853 -13.17420 -13.04732 -12.88605 -12.82630 -12.79462 -12.77931 -12.44914 -12.39910 -12.22476 -12.18151 -11.97506 -11.72425 -11.64452 -11.49277 -11.18178 -11.08222 -10.95224 -10.21341 -9.99562 -9.67652 -9.31479 -6.75921 -0.59583 0.35041 0.81784 1.44246 1.51673 1.60583 1.79551 2.25367 2.52181 2.78450 2.99284 3.32672 3.60302 3.87845 3.95260 4.04622 4.15551 4.28985 4.35253 4.41508 4.50878 4.56702 4.59675 4.68396 4.73574 4.76750 4.83566 4.88810 4.97141 5.00749 5.05339 5.12098 5.14019 5.27318 5.31462 5.36081 5.44687 5.48823 5.53564 5.64626 5.72785 5.80458 5.95715 6.03985 6.12796 6.53021 6.72100 7.90890 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.008364 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.367589 B = 3346.709334 C = 4772.699032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.123 6.123 3 N -0.847 5.847 4 C 0.115 3.885 5 C -0.088 4.088 6 C -0.131 4.131 7 C -0.136 4.136 8 C -0.146 4.146 9 S 2.716 3.284 10 O -0.964 6.964 11 O -1.002 7.002 12 C -0.803 4.803 13 C -0.006 4.006 14 C -0.253 4.253 15 C -0.053 4.053 16 C -0.227 4.227 17 C 0.153 3.847 18 C -0.548 4.548 19 H 0.112 0.888 20 C 0.024 3.976 21 N -0.788 5.788 22 Si 1.084 2.916 23 H -0.267 1.267 24 H -0.267 1.267 25 H -0.239 1.239 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.135 0.865 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.014 0.986 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.101 0.899 44 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -4.184 -5.629 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 O -0.131 6.131 3 N -0.721 5.721 4 C -0.009 4.009 5 C -0.089 4.089 6 C -0.188 4.188 7 C -0.194 4.194 8 C -0.204 4.204 9 S 2.813 3.187 10 O -0.955 6.955 11 O -0.993 6.993 12 C -0.897 4.897 13 C -0.026 4.026 14 C -0.273 4.273 15 C -0.072 4.072 16 C -0.247 4.247 17 C 0.148 3.852 18 C -0.574 4.574 19 H 0.129 0.871 20 C -0.197 4.197 21 N -0.409 5.409 22 Si 0.901 3.099 23 H -0.191 1.191 24 H -0.192 1.192 25 H -0.163 1.163 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.033 0.967 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.119 0.881 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.523 -3.450 -6.569 8.214 hybrid contribution -1.135 -0.696 1.920 2.336 sum 2.388 -4.145 -4.649 6.671 Atomic orbital electron populations 1.23557 0.81727 1.04993 1.01193 1.90537 1.20259 1.05614 1.96663 1.60101 1.72628 1.17993 1.21389 1.22120 0.97109 0.97160 0.84542 1.21024 0.93950 0.97489 0.96486 1.21775 1.01865 0.93525 1.01613 1.21803 1.02775 1.00215 0.94573 1.22028 0.99354 1.01997 0.97005 1.00891 0.74420 0.72072 0.71275 1.93496 1.66258 1.52195 1.83582 1.93412 1.83254 1.59403 1.63190 1.30147 1.29219 1.16430 1.13914 1.20617 0.94135 0.95338 0.92508 1.20890 0.98496 1.03847 1.04082 1.21232 0.97992 0.94383 0.93558 1.21403 1.00225 1.03532 0.99505 1.17289 0.90566 0.86477 0.90884 1.21553 0.98905 1.35848 1.01128 0.87062 1.28134 0.92890 0.98451 1.00220 1.70572 1.15815 1.21008 1.33529 0.83452 0.77344 0.74730 0.74399 1.19144 1.19195 1.16254 0.94542 0.92657 0.84721 0.89729 0.88355 0.92182 0.91553 0.93438 0.92612 0.90443 0.91469 0.96671 0.90261 0.91775 0.86484 0.85090 0.85318 0.88083 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.52 11.47 113.37 1.30 0.78 16 2 O -0.12 -4.50 9.70 -33.65 -0.33 -4.83 16 3 N -0.85 -33.33 2.52 -187.50 -0.47 -33.80 16 4 C 0.11 4.06 4.39 86.38 0.38 4.44 16 5 C -0.09 -2.60 0.84 -52.18 -0.04 -2.64 16 6 C -0.13 -3.50 8.03 71.98 0.58 -2.92 16 7 C -0.14 -3.19 8.47 71.98 0.61 -2.58 16 8 C -0.15 -4.75 7.02 71.98 0.51 -4.24 16 9 S 2.72 123.61 3.99 -56.49 -0.23 123.39 16 10 O -0.96 -45.64 11.95 -128.00 -1.53 -47.17 16 11 O -1.00 -48.86 16.78 -124.09 -2.08 -50.94 16 12 C -0.80 -37.99 5.36 22.73 0.12 -37.87 16 13 C -0.01 -0.27 9.54 22.22 0.21 -0.06 16 14 C -0.25 -10.21 10.05 22.46 0.23 -9.98 16 15 C -0.05 -2.18 10.02 22.22 0.22 -1.96 16 16 C -0.23 -10.59 7.96 22.73 0.18 -10.41 16 17 C 0.15 7.45 5.17 -21.29 -0.11 7.34 16 18 C -0.55 -25.99 6.58 23.46 0.15 -25.83 16 19 H 0.11 5.35 4.08 -2.91 -0.01 5.34 16 20 C 0.02 1.07 4.95 85.26 0.42 1.49 16 21 N -0.79 -36.66 12.52 21.82 0.27 -36.39 16 22 Si 1.08 38.08 29.99 68.60 2.06 40.14 16 23 H -0.27 -9.18 7.11 99.48 0.71 -8.48 16 24 H -0.27 -9.29 7.11 99.48 0.71 -8.59 16 25 H -0.24 -7.39 7.11 99.48 0.71 -6.68 16 26 H 0.04 1.31 7.52 -2.39 -0.02 1.30 16 27 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.14 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.08 2.78 8.14 -2.39 -0.02 2.77 16 30 H 0.10 3.82 4.56 -2.39 -0.01 3.81 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.47 6.47 -2.39 -0.02 1.46 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.01 0.53 6.27 -2.39 -0.01 0.52 16 38 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.06 2.21 7.23 -2.39 -0.02 2.20 16 40 H 0.12 4.91 7.32 -2.91 -0.02 4.89 16 41 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 43 H 0.10 4.80 6.88 -2.91 -0.02 4.78 16 44 H 0.29 13.95 6.76 -92.71 -0.63 13.32 16 Total: -1.00 -58.19 355.11 3.60 -54.60 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 1.14 Total: 39.45 kcal Atomic # 6 Polarization: -89.21 SS G_CDS: 4.76 Total: -84.45 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -0.20 Total: -70.19 kcal Atomic # 8 Polarization: -99.00 SS G_CDS: -3.94 Total: -102.94 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.06 Total: 40.14 kcal Atomic # 16 Polarization: 123.61 SS G_CDS: -0.23 Total: 123.39 kcal Total: -58.19 3.60 -54.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867263211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.360 kcal (2) G-P(sol) polarization free energy of solvation -58.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds