Wall clock time and date at job start Tue Mar 31 2020 15:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00079 * 2 1 4 4 C 1.53004 * 109.47012 * 59.99768 * 3 2 1 5 5 C 1.53000 * 109.47250 * 299.99511 * 3 2 1 6 6 C 1.52999 * 109.46933 * 179.97438 * 3 2 1 7 7 C 1.53008 * 109.46761 * 61.02026 * 6 3 2 8 8 N 1.46505 * 109.46943 * 185.96821 * 7 6 3 9 9 S 1.65601 * 119.99715 * 163.19352 * 8 7 6 10 10 O 1.42101 * 106.40277 * 315.21874 * 9 8 7 11 11 O 1.42098 * 106.40052 * 182.29486 * 9 8 7 12 12 C 1.76203 * 107.21424 * 68.75779 * 9 8 7 13 13 C 1.37640 * 120.12436 * 112.17995 * 12 9 8 14 14 C 1.38621 * 120.24513 * 180.31884 * 13 12 9 15 15 C 1.38658 * 120.50069 * 359.67096 * 14 13 12 16 16 C 1.37597 * 120.24960 * 359.97438 * 15 14 13 17 17 C 1.40693 * 120.12794 * 291.87334 * 12 9 8 18 18 C 1.41387 * 120.24591 * 359.97438 * 17 12 9 19 19 H 1.08006 * 120.00064 * 324.59382 * 18 17 12 20 20 C 1.39946 * 120.00463 * 144.60256 * 18 17 12 21 21 N 1.30828 * 119.99368 * 346.36618 * 20 18 17 22 22 Si 1.86797 * 120.00486 * 166.37340 * 20 18 17 23 23 H 1.48503 * 109.46756 * 274.83036 * 22 20 18 24 24 H 1.48495 * 109.46970 * 34.82864 * 22 20 18 25 25 H 1.48498 * 109.47357 * 154.83277 * 22 20 18 26 26 H 1.09003 * 109.47191 * 60.00176 * 1 2 3 27 27 H 1.08995 * 109.47849 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47459 * 300.00070 * 1 2 3 29 29 H 1.09005 * 109.46683 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47247 * 299.99498 * 4 3 2 31 31 H 1.09001 * 109.47297 * 59.99981 * 4 3 2 32 32 H 1.08991 * 109.46946 * 300.00487 * 5 3 2 33 33 H 1.09000 * 109.46674 * 60.00328 * 5 3 2 34 34 H 1.08996 * 109.47100 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47495 * 301.02024 * 6 3 2 36 36 H 1.09000 * 109.46935 * 181.01316 * 6 3 2 37 37 H 1.08999 * 109.46764 * 65.97051 * 7 6 3 38 38 H 1.08993 * 109.46892 * 305.96650 * 7 6 3 39 39 H 0.96998 * 119.99874 * 343.19801 * 8 7 6 40 40 H 1.07998 * 119.88012 * 0.02562 * 13 12 9 41 41 H 1.08002 * 119.74937 * 179.69494 * 14 13 12 42 42 H 1.08000 * 119.87645 * 180.02562 * 15 14 13 43 43 H 1.07993 * 120.13053 * 180.02562 * 16 15 14 44 44 H 0.96998 * 120.00450 * 357.09836 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5589 2.0647 -1.2493 6 6 3.5354 1.1845 0.0006 7 6 3.9891 0.4473 -1.2610 8 7 5.4324 0.2056 -1.1930 9 16 6.1320 -0.9159 -2.1906 10 8 5.2918 -2.0615 -2.1581 11 8 7.5106 -0.9532 -1.8479 12 6 6.0442 -0.2809 -3.8318 13 6 7.1942 0.0880 -4.4922 14 6 7.1274 0.5941 -5.7810 15 6 5.9052 0.7284 -6.4220 16 6 4.7435 0.3591 -5.7837 17 6 4.7991 -0.1550 -4.4747 18 6 3.6119 -0.5373 -3.8087 19 1 3.6173 -1.3846 -3.1390 20 6 2.4298 0.1820 -4.0174 21 7 2.4701 1.3502 -4.6051 22 14 0.7944 -0.5255 -3.4567 23 1 0.2590 -1.4275 -4.5079 24 1 0.9914 -1.2919 -2.2002 25 1 -0.1672 0.5803 -3.2166 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.0025 3.0603 1.2494 30 1 0.4721 2.1509 1.2492 31 1 1.8803 1.5238 2.1393 32 1 1.8805 1.5237 -2.1391 33 1 0.4723 2.1508 -1.2493 34 1 2.0019 3.0605 -1.2490 35 1 3.8555 0.6281 0.8815 36 1 3.9788 2.1801 0.0188 37 1 3.7632 1.0544 -2.1376 38 1 3.4642 -0.5052 -1.3337 39 1 5.9782 0.7025 -0.5637 40 1 8.1516 -0.0127 -4.0028 41 1 8.0343 0.8857 -6.2899 42 1 5.8650 1.1235 -7.4263 43 1 3.7927 0.4641 -6.2848 44 1 3.3230 1.7367 -4.8582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867727635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:18 Heat of formation + Delta-G solvation = -111.228536 kcal Electronic energy + Delta-G solvation = -28267.832512 eV Core-core repulsion = 24504.785756 eV Total energy + Delta-G solvation = -3763.046757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.05072 -37.93880 -36.36042 -35.28670 -34.86062 -34.03364 -32.67244 -30.23948 -29.47247 -28.44314 -27.29389 -26.39682 -25.45572 -22.51617 -21.82085 -21.19458 -19.70325 -18.62899 -18.20136 -16.93793 -16.25322 -15.99951 -15.71881 -15.08941 -15.04642 -14.87118 -14.42769 -14.12827 -13.86484 -13.76747 -13.35834 -13.24753 -12.76358 -12.63013 -12.35304 -12.21904 -11.98278 -11.80987 -11.55173 -11.42625 -11.28911 -11.22108 -11.19728 -11.00822 -10.92566 -10.83036 -10.56616 -10.50261 -10.31359 -10.08253 -9.77869 -9.36652 -9.27716 -9.21412 -8.56446 -8.25977 -7.75980 -7.40262 -4.85217 1.53756 2.18288 2.60558 3.05302 3.15628 3.32145 3.84393 3.96241 4.02715 4.35177 4.69257 4.94121 4.97976 5.13073 5.18540 5.43128 5.49430 5.53840 5.59268 5.62720 5.75103 5.78217 5.88378 5.89782 5.95339 6.01974 6.03222 6.19014 6.24340 6.30572 6.39142 6.57609 6.59223 6.77662 6.85135 6.91267 7.13862 7.27852 7.36445 7.47066 7.54376 7.67424 7.72187 7.84189 7.98727 8.38207 8.59217 9.83731 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.006468 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.557026 B = 4327.700275 C = 5384.211002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.368 6.368 3 C 0.112 3.888 4 C -0.175 4.175 5 C -0.197 4.197 6 C -0.115 4.115 7 C 0.122 3.878 8 N -1.121 6.121 9 S 2.709 3.291 10 O -0.971 6.971 11 O -1.001 7.001 12 C -0.773 4.773 13 C 0.009 3.991 14 C -0.255 4.255 15 C -0.058 4.058 16 C -0.206 4.206 17 C 0.170 3.830 18 C -0.532 4.532 19 H 0.120 0.880 20 C 0.045 3.955 21 N -0.794 5.794 22 Si 1.039 2.961 23 H -0.279 1.279 24 H -0.243 1.243 25 H -0.272 1.272 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.404 0.596 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 3.868 7.642 9.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.287 6.287 3 C 0.072 3.928 4 C -0.232 4.232 5 C -0.254 4.254 6 C -0.154 4.154 7 C -0.004 4.004 8 N -0.878 5.878 9 S 2.805 3.195 10 O -0.961 6.961 11 O -0.991 6.991 12 C -0.868 4.868 13 C -0.011 4.011 14 C -0.276 4.276 15 C -0.077 4.077 16 C -0.226 4.226 17 C 0.165 3.835 18 C -0.560 4.560 19 H 0.138 0.862 20 C -0.177 4.177 21 N -0.418 5.418 22 Si 0.862 3.138 23 H -0.206 1.206 24 H -0.167 1.167 25 H -0.197 1.197 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.236 0.764 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.129 0.871 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.598 3.134 7.835 10.126 hybrid contribution 1.537 0.922 -0.680 1.917 sum -4.061 4.056 7.155 9.172 Atomic orbital electron populations 1.22854 0.82355 1.02535 0.99998 1.88056 1.18833 1.26896 1.94880 1.21449 0.93447 0.83580 0.94301 1.22408 1.01656 1.00839 0.98342 1.22755 1.01452 1.01538 0.99683 1.21863 0.92556 1.01308 0.99678 1.21796 0.78641 1.02535 0.97382 1.55505 1.16619 1.61243 1.54398 1.00793 0.71475 0.73362 0.73845 1.93479 1.68067 1.47341 1.87176 1.93449 1.33863 1.87243 1.84594 1.30002 1.00144 1.33633 1.22982 1.20352 0.95698 0.90983 0.94082 1.20517 0.96550 1.13207 0.97285 1.20877 0.93284 0.95955 0.97594 1.21411 0.97157 1.08299 0.95720 1.17109 0.90546 0.85448 0.90400 1.21567 0.94038 1.15068 1.25285 0.86211 1.26962 1.04088 0.93919 0.92716 1.70499 1.33421 1.13644 1.24221 0.84241 0.73514 0.77094 0.78980 1.20561 1.16679 1.19693 0.93744 0.89815 0.94076 0.91630 0.92257 0.91926 0.88720 0.92528 0.91638 0.90904 0.90593 0.89769 0.88822 0.76443 0.87155 0.88388 0.88523 0.87050 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.98 101.05 0.91 1.16 16 2 O -0.37 -5.91 8.86 -35.23 -0.31 -6.22 16 3 C 0.11 1.63 0.82 -90.62 -0.07 1.55 16 4 C -0.17 -1.97 8.25 37.16 0.31 -1.66 16 5 C -0.20 -3.07 7.29 37.16 0.27 -2.80 16 6 C -0.12 -1.71 4.64 -26.73 -0.12 -1.84 16 7 C 0.12 2.28 3.73 -4.03 -0.02 2.27 16 8 N -1.12 -20.65 5.99 -10.61 -0.06 -20.72 16 9 S 2.71 59.61 5.45 -107.50 -0.59 59.02 16 10 O -0.97 -23.88 14.83 -57.17 -0.85 -24.73 16 11 O -1.00 -22.84 16.97 -57.17 -0.97 -23.81 16 12 C -0.77 -18.23 5.97 -38.87 -0.23 -18.47 16 13 C 0.01 0.20 9.54 -39.66 -0.38 -0.18 16 14 C -0.26 -5.43 10.05 -39.29 -0.39 -5.82 16 15 C -0.06 -1.25 10.02 -39.66 -0.40 -1.65 16 16 C -0.21 -4.88 7.71 -38.87 -0.30 -5.18 16 17 C 0.17 4.18 5.22 -106.83 -0.56 3.62 16 18 C -0.53 -12.89 4.80 -37.74 -0.18 -13.07 16 19 H 0.12 3.04 4.60 -52.48 -0.24 2.79 16 20 C 0.05 1.03 2.93 -17.34 -0.05 0.98 16 21 N -0.79 -18.45 12.34 55.55 0.69 -17.76 16 22 Si 1.04 20.57 25.30 -169.99 -4.30 16.27 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.24 -4.61 6.13 56.52 0.35 -4.26 16 25 H -0.27 -5.03 7.00 56.52 0.40 -4.63 16 26 H 0.04 0.59 5.13 -51.93 -0.27 0.33 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.44 6.42 -51.93 -0.33 0.11 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.61 6.54 -51.93 -0.34 0.27 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.73 2.41 -51.93 -0.13 1.61 16 33 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.72 4.59 -51.93 -0.24 1.48 16 38 H 0.09 1.96 5.71 -51.93 -0.30 1.67 16 39 H 0.40 6.11 8.67 -34.47 -0.30 5.82 16 40 H 0.11 2.28 7.32 -52.49 -0.38 1.90 16 41 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.11 2.65 6.76 -52.49 -0.35 2.29 16 44 H 0.30 7.21 5.98 -40.82 -0.24 6.96 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -28.58 335.54 -8.26 -36.84 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -5.70 Total: 17.12 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: -1.22 Total: -41.08 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.62 Total: -38.48 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -2.13 Total: -54.75 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.30 Total: 16.27 kcal Atomic # 16 Polarization: 59.61 SS G_CDS: -0.59 Total: 59.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.58 -8.26 -36.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867727635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.388 kcal (2) G-P(sol) polarization free energy of solvation -28.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds