Wall clock time and date at job start Tue Mar 31 2020 15:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00079 * 2 1 4 4 C 1.53004 * 109.47012 * 59.99768 * 3 2 1 5 5 C 1.53000 * 109.47250 * 299.99511 * 3 2 1 6 6 C 1.52999 * 109.46933 * 179.97438 * 3 2 1 7 7 C 1.53008 * 109.46761 * 61.02026 * 6 3 2 8 8 N 1.46505 * 109.46943 * 185.96821 * 7 6 3 9 9 S 1.65601 * 119.99715 * 163.19352 * 8 7 6 10 10 O 1.42101 * 106.40277 * 315.21874 * 9 8 7 11 11 O 1.42098 * 106.40052 * 182.29486 * 9 8 7 12 12 C 1.76203 * 107.21424 * 68.75779 * 9 8 7 13 13 C 1.37640 * 120.12436 * 112.17995 * 12 9 8 14 14 C 1.38621 * 120.24513 * 180.31884 * 13 12 9 15 15 C 1.38658 * 120.50069 * 359.67096 * 14 13 12 16 16 C 1.37597 * 120.24960 * 359.97438 * 15 14 13 17 17 C 1.40693 * 120.12794 * 291.87334 * 12 9 8 18 18 C 1.41387 * 120.24591 * 359.97438 * 17 12 9 19 19 H 1.08006 * 120.00064 * 324.59382 * 18 17 12 20 20 C 1.39946 * 120.00463 * 144.60256 * 18 17 12 21 21 N 1.30828 * 119.99368 * 346.36618 * 20 18 17 22 22 Si 1.86797 * 120.00486 * 166.37340 * 20 18 17 23 23 H 1.48503 * 109.46756 * 274.83036 * 22 20 18 24 24 H 1.48495 * 109.46970 * 34.82864 * 22 20 18 25 25 H 1.48498 * 109.47357 * 154.83277 * 22 20 18 26 26 H 1.09003 * 109.47191 * 60.00176 * 1 2 3 27 27 H 1.08995 * 109.47849 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47459 * 300.00070 * 1 2 3 29 29 H 1.09005 * 109.46683 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47247 * 299.99498 * 4 3 2 31 31 H 1.09001 * 109.47297 * 59.99981 * 4 3 2 32 32 H 1.08991 * 109.46946 * 300.00487 * 5 3 2 33 33 H 1.09000 * 109.46674 * 60.00328 * 5 3 2 34 34 H 1.08996 * 109.47100 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47495 * 301.02024 * 6 3 2 36 36 H 1.09000 * 109.46935 * 181.01316 * 6 3 2 37 37 H 1.08999 * 109.46764 * 65.97051 * 7 6 3 38 38 H 1.08993 * 109.46892 * 305.96650 * 7 6 3 39 39 H 0.96998 * 119.99874 * 343.19801 * 8 7 6 40 40 H 1.07998 * 119.88012 * 0.02562 * 13 12 9 41 41 H 1.08002 * 119.74937 * 179.69494 * 14 13 12 42 42 H 1.08000 * 119.87645 * 180.02562 * 15 14 13 43 43 H 1.07993 * 120.13053 * 180.02562 * 16 15 14 44 44 H 0.96998 * 120.00450 * 357.09836 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5589 2.0647 -1.2493 6 6 3.5354 1.1845 0.0006 7 6 3.9891 0.4473 -1.2610 8 7 5.4324 0.2056 -1.1930 9 16 6.1320 -0.9159 -2.1906 10 8 5.2918 -2.0615 -2.1581 11 8 7.5106 -0.9532 -1.8479 12 6 6.0442 -0.2809 -3.8318 13 6 7.1942 0.0880 -4.4922 14 6 7.1274 0.5941 -5.7810 15 6 5.9052 0.7284 -6.4220 16 6 4.7435 0.3591 -5.7837 17 6 4.7991 -0.1550 -4.4747 18 6 3.6119 -0.5373 -3.8087 19 1 3.6173 -1.3846 -3.1390 20 6 2.4298 0.1820 -4.0174 21 7 2.4701 1.3502 -4.6051 22 14 0.7944 -0.5255 -3.4567 23 1 0.2590 -1.4275 -4.5079 24 1 0.9914 -1.2919 -2.2002 25 1 -0.1672 0.5803 -3.2166 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.0025 3.0603 1.2494 30 1 0.4721 2.1509 1.2492 31 1 1.8803 1.5238 2.1393 32 1 1.8805 1.5237 -2.1391 33 1 0.4723 2.1508 -1.2493 34 1 2.0019 3.0605 -1.2490 35 1 3.8555 0.6281 0.8815 36 1 3.9788 2.1801 0.0188 37 1 3.7632 1.0544 -2.1376 38 1 3.4642 -0.5052 -1.3337 39 1 5.9782 0.7025 -0.5637 40 1 8.1516 -0.0127 -4.0028 41 1 8.0343 0.8857 -6.2899 42 1 5.8650 1.1235 -7.4263 43 1 3.7927 0.4641 -6.2848 44 1 3.3230 1.7367 -4.8582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867727635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:17 Heat of formation + Delta-G solvation = -131.448989 kcal Electronic energy + Delta-G solvation = -28268.709337 eV Core-core repulsion = 24504.785756 eV Total energy + Delta-G solvation = -3763.923581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.19163 -39.66308 -38.16230 -36.79049 -36.66742 -35.73658 -33.88116 -31.99400 -31.22934 -29.63863 -28.36465 -27.48892 -27.19095 -23.93837 -23.48671 -22.94993 -20.89651 -20.28574 -19.93129 -18.60099 -17.87306 -17.25529 -17.20524 -16.59869 -16.49843 -16.17139 -15.97612 -15.63034 -15.46881 -15.31629 -14.93392 -14.50570 -14.35541 -14.09194 -13.84244 -13.38865 -13.33656 -13.17547 -13.05013 -13.01078 -12.94926 -12.73672 -12.70869 -12.48318 -12.33748 -12.23564 -12.14101 -11.91039 -11.70589 -11.55231 -11.20547 -11.05675 -10.97696 -10.35987 -10.14870 -10.01083 -9.54391 -9.20071 -6.67075 -0.19376 0.40300 0.84496 1.43151 1.54990 1.76043 2.22964 2.34617 2.61312 2.92772 2.96194 3.35165 3.66594 3.89998 3.94589 4.11938 4.21849 4.32969 4.33836 4.51053 4.51998 4.59807 4.60839 4.70550 4.75464 4.80265 4.82386 4.88766 4.96661 4.97715 5.08577 5.19860 5.21877 5.30599 5.37259 5.43047 5.52087 5.55933 5.59517 5.79098 5.87611 6.03234 6.19239 6.33879 6.43678 6.59217 6.79242 8.02989 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.006468 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.557026 B = 4327.700275 C = 5384.211002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.395 6.395 3 C 0.109 3.891 4 C -0.167 4.167 5 C -0.201 4.201 6 C -0.113 4.113 7 C 0.125 3.875 8 N -1.107 6.107 9 S 2.723 3.277 10 O -1.001 7.001 11 O -1.010 7.010 12 C -0.791 4.791 13 C -0.006 4.006 14 C -0.252 4.252 15 C -0.055 4.055 16 C -0.228 4.228 17 C 0.148 3.852 18 C -0.545 4.545 19 H 0.102 0.898 20 C 0.035 3.965 21 N -0.800 5.800 22 Si 1.057 2.943 23 H -0.282 1.282 24 H -0.237 1.237 25 H -0.252 1.252 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.420 0.580 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 5.244 8.587 10.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.315 6.315 3 C 0.069 3.931 4 C -0.225 4.225 5 C -0.259 4.259 6 C -0.152 4.152 7 C -0.001 4.001 8 N -0.868 5.868 9 S 2.819 3.181 10 O -0.991 6.991 11 O -1.001 7.001 12 C -0.885 4.885 13 C -0.026 4.026 14 C -0.272 4.272 15 C -0.074 4.074 16 C -0.248 4.248 17 C 0.143 3.857 18 C -0.573 4.573 19 H 0.120 0.880 20 C -0.185 4.185 21 N -0.423 5.423 22 Si 0.876 3.124 23 H -0.209 1.209 24 H -0.160 1.160 25 H -0.176 1.176 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.256 0.744 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.120 0.880 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.621 4.525 8.779 11.364 hybrid contribution 1.644 0.505 -1.016 1.997 sum -3.978 5.030 7.763 10.069 Atomic orbital electron populations 1.23035 0.81116 1.03408 1.00964 1.88021 1.20387 1.27979 1.95084 1.21542 0.92834 0.83393 0.95319 1.22334 1.02452 1.01077 0.96594 1.22776 1.02103 1.01769 0.99203 1.21910 0.93448 1.02053 0.97758 1.21664 0.77998 1.01386 0.99008 1.55144 1.16921 1.60806 1.53899 1.00210 0.70942 0.73260 0.73657 1.93440 1.68778 1.49328 1.87540 1.93423 1.34429 1.87557 1.84666 1.30265 1.00400 1.33787 1.24021 1.20685 0.95926 0.91111 0.94881 1.20948 0.97752 1.11688 0.96828 1.21245 0.92630 0.94664 0.98863 1.21445 0.97743 1.09863 0.95762 1.17366 0.91111 0.86114 0.91062 1.21466 0.94936 1.15124 1.25750 0.88007 1.27614 1.05418 0.93475 0.91967 1.70558 1.32670 1.13950 1.25127 0.84068 0.71976 0.77401 0.78942 1.20880 1.15991 1.17555 0.94322 0.89166 0.91478 0.90156 0.91175 0.91243 0.91468 0.91677 0.90742 0.89801 0.88348 0.91503 0.91455 0.74439 0.85685 0.84978 0.85348 0.88016 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 8.98 113.37 1.02 1.28 16 2 O -0.39 -12.21 8.86 -148.98 -1.32 -13.53 16 3 C 0.11 2.95 0.82 -10.79 -0.01 2.94 16 4 C -0.17 -3.22 8.25 71.98 0.59 -2.63 16 5 C -0.20 -5.98 7.29 71.98 0.52 -5.46 16 6 C -0.11 -3.17 4.64 30.60 0.14 -3.03 16 7 C 0.12 4.68 3.73 86.38 0.32 5.01 16 8 N -1.11 -40.52 5.99 -187.48 -1.12 -41.64 16 9 S 2.72 120.92 5.45 -56.49 -0.31 120.62 16 10 O -1.00 -50.64 14.83 -128.00 -1.90 -52.53 16 11 O -1.01 -45.68 16.97 -128.00 -2.17 -47.86 16 12 C -0.79 -37.55 5.97 22.73 0.14 -37.42 16 13 C -0.01 -0.28 9.54 22.22 0.21 -0.06 16 14 C -0.25 -10.18 10.05 22.46 0.23 -9.96 16 15 C -0.06 -2.30 10.02 22.22 0.22 -2.08 16 16 C -0.23 -10.88 7.71 22.73 0.18 -10.71 16 17 C 0.15 7.43 5.22 -21.29 -0.11 7.32 16 18 C -0.54 -27.22 4.80 23.46 0.11 -27.11 16 19 H 0.10 5.40 4.60 -2.91 -0.01 5.39 16 20 C 0.03 1.62 2.93 85.26 0.25 1.87 16 21 N -0.80 -37.73 12.34 21.83 0.27 -37.46 16 22 Si 1.06 41.70 25.30 68.60 1.74 43.43 16 23 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.24 -9.01 6.13 99.48 0.61 -8.40 16 25 H -0.25 -8.98 7.00 99.48 0.70 -8.28 16 26 H 0.04 0.97 5.13 -2.39 -0.01 0.96 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 1.25 6.42 -2.39 -0.02 1.23 16 29 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.07 1.20 6.54 -2.39 -0.02 1.19 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 2.42 2.41 -2.39 -0.01 2.42 16 33 H 0.06 1.76 6.54 -2.39 -0.02 1.74 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.07 2.77 4.59 -2.39 -0.01 2.76 16 38 H 0.07 2.90 5.71 -2.39 -0.01 2.88 16 39 H 0.42 12.26 8.67 -96.74 -0.84 11.42 16 40 H 0.13 4.99 7.32 -2.91 -0.02 4.97 16 41 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.10 4.95 6.76 -2.91 -0.02 4.93 16 44 H 0.29 14.27 5.98 -92.71 -0.55 13.72 16 Total: -1.00 -62.14 335.54 -0.69 -62.82 By element: Atomic # 1 Polarization: 45.88 SS G_CDS: 0.31 Total: 46.19 kcal Atomic # 6 Polarization: -83.85 SS G_CDS: 3.81 Total: -80.04 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -0.85 Total: -79.11 kcal Atomic # 8 Polarization: -108.53 SS G_CDS: -5.39 Total: -113.92 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.74 Total: 43.43 kcal Atomic # 16 Polarization: 120.92 SS G_CDS: -0.31 Total: 120.62 kcal Total: -62.14 -0.69 -62.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867727635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.625 kcal (2) G-P(sol) polarization free energy of solvation -62.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds