Wall clock time and date at job start Tue Mar 31 2020 15:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99849 * 2 1 4 4 C 1.53002 * 109.46907 * 60.00500 * 3 2 1 5 5 C 1.53004 * 109.47123 * 300.00239 * 3 2 1 6 6 C 1.52996 * 109.46956 * 180.02562 * 3 2 1 7 7 C 1.53002 * 109.47194 * 65.00541 * 6 3 2 8 8 N 1.46505 * 109.47278 * 179.97438 * 7 6 3 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 6 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.09004 * 109.46984 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46967 * 299.99413 * 1 2 3 28 28 H 1.08996 * 109.47334 * 59.99923 * 1 2 3 29 29 H 1.08993 * 109.46891 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46929 * 299.99520 * 4 3 2 31 31 H 1.08994 * 109.47363 * 59.99638 * 4 3 2 32 32 H 1.08995 * 109.47142 * 300.00353 * 5 3 2 33 33 H 1.09003 * 109.46881 * 60.00051 * 5 3 2 34 34 H 1.09004 * 109.46842 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47419 * 305.00220 * 6 3 2 36 36 H 1.09003 * 109.46770 * 184.99925 * 6 3 2 37 37 H 1.08997 * 109.47200 * 59.99545 * 7 6 3 38 38 H 1.09003 * 109.46759 * 299.99391 * 7 6 3 39 39 H 0.97007 * 119.99457 * 345.00054 * 8 7 6 40 40 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 41 41 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 42 42 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 43 43 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1847 -0.0006 7 6 3.9952 0.5370 -1.3084 8 7 5.4557 0.4219 -1.3093 9 16 6.2080 -0.5621 -2.4084 10 8 5.5270 -1.8084 -2.3633 11 8 7.6036 -0.4301 -2.1757 12 6 5.9040 0.1136 -4.0071 13 6 4.7831 -0.2807 -4.7218 14 6 4.5347 0.2378 -5.9830 15 6 5.3943 1.1600 -6.5352 16 6 6.5318 1.5718 -5.8167 17 6 7.4222 2.5181 -6.3741 18 1 8.4511 2.5495 -6.0472 19 6 6.9704 3.4141 -7.3495 20 7 5.6881 3.6255 -7.4999 21 14 8.1982 4.3086 -8.4368 22 1 9.5768 3.8970 -8.0688 23 1 7.9424 3.9650 -9.8587 24 1 8.0515 5.7741 -8.2474 25 6 6.7771 1.0343 -4.5394 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.0017 3.0605 1.2491 30 1 0.4722 2.1507 1.2493 31 1 1.8804 1.5237 2.1392 32 1 1.8802 1.5239 -2.1392 33 1 0.4720 2.1508 -1.2492 34 1 2.0017 3.0607 -1.2490 35 1 3.8514 0.5682 0.8409 36 1 3.9784 2.1766 0.0889 37 1 3.6791 1.1535 -2.1499 38 1 3.5521 -0.4549 -1.3979 39 1 5.9820 0.9221 -0.6659 40 1 4.1007 -1.0004 -4.2942 41 1 3.6609 -0.0798 -6.5327 42 1 5.1967 1.5657 -7.5164 43 1 5.3749 4.2469 -8.1758 44 1 7.6471 1.3433 -3.9792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867727668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:21 Heat of formation + Delta-G solvation = -115.459030 kcal Electronic energy + Delta-G solvation = -26202.297505 eV Core-core repulsion = 22439.067300 eV Total energy + Delta-G solvation = -3763.230205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.37144 -37.62572 -36.62400 -35.65886 -35.23717 -33.84110 -33.02960 -30.06732 -29.77158 -28.80363 -27.66328 -26.71633 -25.48175 -23.00390 -21.86623 -20.96943 -20.06330 -18.99412 -17.94438 -17.02128 -16.46116 -16.15669 -15.91073 -15.40980 -15.23339 -15.14784 -14.77502 -14.46764 -14.21959 -13.68270 -13.47137 -13.34004 -13.08307 -12.60368 -12.57377 -12.22855 -12.12650 -11.91722 -11.78483 -11.62913 -11.56439 -11.40951 -11.39626 -11.36875 -11.35427 -11.16729 -10.97053 -10.88484 -10.59448 -10.47040 -9.75756 -9.68188 -9.61864 -9.35505 -9.05178 -8.02546 -7.69643 -6.92999 -4.53142 1.09323 2.21581 2.63135 3.00110 3.04349 3.07330 3.58379 3.66954 3.82977 4.28692 4.44861 4.56435 4.61533 4.81309 5.06738 5.15107 5.15276 5.22322 5.27227 5.38925 5.42000 5.42507 5.55319 5.60159 5.61905 5.77837 5.89856 5.95124 6.00774 6.06795 6.20073 6.23356 6.27644 6.66816 6.77093 6.86636 7.03698 7.10834 7.21880 7.29518 7.40310 7.74022 7.81902 7.95140 8.41124 8.67439 8.72607 10.02440 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.003504 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.211107 B = 7989.228011 C = 8893.326897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.112 3.888 4 C -0.177 4.177 5 C -0.187 4.187 6 C -0.111 4.111 7 C 0.118 3.882 8 N -1.122 6.122 9 S 2.690 3.310 10 O -0.974 6.974 11 O -0.975 6.975 12 C -0.631 4.631 13 C -0.148 4.148 14 C -0.121 4.121 15 C -0.119 4.119 16 C 0.091 3.909 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.795 5.795 21 Si 0.910 3.090 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.124 4.124 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.412 0.588 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.282 0.718 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 0.380 11.774 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.295 6.295 3 C 0.072 3.928 4 C -0.234 4.234 5 C -0.244 4.244 6 C -0.149 4.149 7 C -0.008 4.008 8 N -0.880 5.880 9 S 2.786 3.214 10 O -0.964 6.964 11 O -0.965 6.965 12 C -0.723 4.723 13 C -0.169 4.169 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.088 3.912 17 C -0.490 4.490 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.420 5.420 21 Si 0.734 3.266 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.145 4.145 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.245 0.755 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.093 0.907 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.053 -0.511 11.740 14.834 hybrid contribution 0.051 1.566 -0.845 1.780 sum -9.002 1.055 10.895 14.172 Atomic orbital electron populations 1.22783 0.81733 1.02605 1.00054 1.88012 1.19342 1.27116 1.94996 1.21463 0.93300 0.83503 0.94513 1.22404 1.01814 1.01010 0.98192 1.22555 1.01727 1.01440 0.98693 1.21761 0.92526 1.02110 0.98540 1.21342 0.78826 1.02434 0.98178 1.55555 1.15119 1.66526 1.50806 1.01610 0.72539 0.73374 0.73918 1.93514 1.75492 1.40317 1.87092 1.93532 1.30554 1.86676 1.85762 1.29766 1.06356 1.14596 1.21601 1.20102 0.96960 1.02935 0.96928 1.20806 0.99113 0.98499 0.95611 1.21634 0.95994 0.96221 0.99998 1.17687 0.92408 0.91179 0.89966 1.19653 0.97786 1.13380 1.18152 0.89884 1.25930 0.95758 0.96124 0.96448 1.69794 1.14953 1.28726 1.28526 0.86217 0.81589 0.78960 0.79785 1.18204 1.19605 1.19883 1.20785 0.98666 0.98681 0.96377 0.89799 0.94050 0.93671 0.91316 0.92126 0.91717 0.90598 0.92218 0.91090 0.90293 0.89770 0.91126 0.89640 0.75494 0.87567 0.88425 0.85773 0.90683 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.21 101.05 1.03 1.25 16 2 O -0.38 -4.41 9.88 -35.23 -0.35 -4.76 16 3 C 0.11 1.15 0.82 -90.62 -0.07 1.07 16 4 C -0.18 -1.43 8.25 37.16 0.31 -1.12 16 5 C -0.19 -1.89 7.76 37.16 0.29 -1.60 16 6 C -0.11 -1.19 4.65 -26.73 -0.12 -1.31 16 7 C 0.12 1.63 5.63 -4.04 -0.02 1.61 16 8 N -1.12 -16.62 6.00 -10.61 -0.06 -16.68 16 9 S 2.69 51.54 5.73 -107.50 -0.62 50.93 16 10 O -0.97 -20.47 16.74 -57.17 -0.96 -21.43 16 11 O -0.97 -20.77 17.27 -57.17 -0.99 -21.76 16 12 C -0.63 -13.88 5.94 -39.66 -0.24 -14.12 16 13 C -0.15 -3.23 9.53 -39.29 -0.37 -3.60 16 14 C -0.12 -2.71 10.02 -39.66 -0.40 -3.11 16 15 C -0.12 -2.95 8.70 -38.87 -0.34 -3.29 16 16 C 0.09 2.35 5.58 -106.82 -0.60 1.76 16 17 C -0.46 -11.80 9.05 -37.75 -0.34 -12.15 16 18 H 0.08 2.06 7.91 -52.49 -0.41 1.65 16 19 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -19.48 10.95 55.55 0.61 -18.87 16 21 Si 0.91 17.99 29.60 -169.99 -5.03 12.96 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.12 -2.98 9.26 -38.87 -0.36 -3.34 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.30 6.42 -51.93 -0.33 -0.03 16 28 H 0.04 0.37 6.42 -51.93 -0.33 0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.88 6.34 -51.93 -0.33 0.55 16 33 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.00 6.34 -51.93 -0.33 0.67 16 38 H 0.09 1.28 7.43 -51.93 -0.39 0.89 16 39 H 0.41 5.01 8.65 -34.48 -0.30 4.71 16 40 H 0.11 2.10 7.61 -52.49 -0.40 1.71 16 41 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 42 H 0.12 3.13 6.15 -52.49 -0.32 2.81 16 43 H 0.28 6.25 8.30 -40.82 -0.34 5.92 16 44 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -31.04 367.21 -9.51 -40.55 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.32 Total: 9.77 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: -1.33 Total: -36.24 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.54 Total: -35.55 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -2.29 Total: -47.95 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 51.54 SS G_CDS: -0.62 Total: 50.93 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.04 -9.51 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867727668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.907 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds