Wall clock time and date at job start Tue Mar 31 2020 15:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99849 * 2 1 4 4 C 1.53002 * 109.46907 * 60.00500 * 3 2 1 5 5 C 1.53004 * 109.47123 * 300.00239 * 3 2 1 6 6 C 1.52996 * 109.46956 * 180.02562 * 3 2 1 7 7 C 1.53002 * 109.47194 * 65.00541 * 6 3 2 8 8 N 1.46505 * 109.47278 * 179.97438 * 7 6 3 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 6 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.09004 * 109.46984 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46967 * 299.99413 * 1 2 3 28 28 H 1.08996 * 109.47334 * 59.99923 * 1 2 3 29 29 H 1.08993 * 109.46891 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46929 * 299.99520 * 4 3 2 31 31 H 1.08994 * 109.47363 * 59.99638 * 4 3 2 32 32 H 1.08995 * 109.47142 * 300.00353 * 5 3 2 33 33 H 1.09003 * 109.46881 * 60.00051 * 5 3 2 34 34 H 1.09004 * 109.46842 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47419 * 305.00220 * 6 3 2 36 36 H 1.09003 * 109.46770 * 184.99925 * 6 3 2 37 37 H 1.08997 * 109.47200 * 59.99545 * 7 6 3 38 38 H 1.09003 * 109.46759 * 299.99391 * 7 6 3 39 39 H 0.97007 * 119.99457 * 345.00054 * 8 7 6 40 40 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 41 41 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 42 42 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 43 43 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1847 -0.0006 7 6 3.9952 0.5370 -1.3084 8 7 5.4557 0.4219 -1.3093 9 16 6.2080 -0.5621 -2.4084 10 8 5.5270 -1.8084 -2.3633 11 8 7.6036 -0.4301 -2.1757 12 6 5.9040 0.1136 -4.0071 13 6 4.7831 -0.2807 -4.7218 14 6 4.5347 0.2378 -5.9830 15 6 5.3943 1.1600 -6.5352 16 6 6.5318 1.5718 -5.8167 17 6 7.4222 2.5181 -6.3741 18 1 8.4511 2.5495 -6.0472 19 6 6.9704 3.4141 -7.3495 20 7 5.6881 3.6255 -7.4999 21 14 8.1982 4.3086 -8.4368 22 1 9.5768 3.8970 -8.0688 23 1 7.9424 3.9650 -9.8587 24 1 8.0515 5.7741 -8.2474 25 6 6.7771 1.0343 -4.5394 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.0017 3.0605 1.2491 30 1 0.4722 2.1507 1.2493 31 1 1.8804 1.5237 2.1392 32 1 1.8802 1.5239 -2.1392 33 1 0.4720 2.1508 -1.2492 34 1 2.0017 3.0607 -1.2490 35 1 3.8514 0.5682 0.8409 36 1 3.9784 2.1766 0.0889 37 1 3.6791 1.1535 -2.1499 38 1 3.5521 -0.4549 -1.3979 39 1 5.9820 0.9221 -0.6659 40 1 4.1007 -1.0004 -4.2942 41 1 3.6609 -0.0798 -6.5327 42 1 5.1967 1.5657 -7.5164 43 1 5.3749 4.2469 -8.1758 44 1 7.6471 1.3433 -3.9792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867727668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:21 Heat of formation + Delta-G solvation = -136.427596 kcal Electronic energy + Delta-G solvation = -26203.206770 eV Core-core repulsion = 22439.067300 eV Total energy + Delta-G solvation = -3764.139470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.16339 -39.44549 -38.26660 -36.91476 -36.75471 -35.66721 -33.93871 -31.91374 -31.58473 -29.70653 -28.39135 -27.46777 -27.34234 -24.02582 -23.64769 -22.78600 -20.97406 -20.46086 -19.61792 -18.47813 -17.75146 -17.42327 -17.27171 -16.83644 -16.54587 -16.31759 -16.08037 -15.76452 -15.40035 -15.21506 -15.03276 -14.42267 -14.31233 -13.97357 -13.69876 -13.46526 -13.31240 -13.21171 -13.18184 -13.07567 -13.03399 -12.84992 -12.80501 -12.63201 -12.59778 -12.47723 -12.28893 -12.19646 -12.03992 -11.54963 -11.35878 -11.26103 -11.14457 -10.44274 -10.36277 -9.84925 -9.56214 -8.73440 -6.45040 -0.47658 0.40596 0.84055 1.37823 1.44729 1.52769 2.14422 2.17968 2.55525 2.78895 2.91344 3.45160 3.53225 3.79168 3.84417 4.05298 4.18488 4.30849 4.37266 4.44555 4.51558 4.57805 4.60554 4.67640 4.74533 4.78479 4.84383 4.90367 4.93020 4.95012 5.06454 5.06969 5.12900 5.20202 5.25226 5.27846 5.41116 5.42440 5.56890 5.88853 5.94031 6.09835 6.15829 6.38430 6.52671 6.79724 6.84748 8.24574 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.003504 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.211107 B = 7989.228011 C = 8893.326897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.401 6.401 3 C 0.109 3.891 4 C -0.172 4.172 5 C -0.188 4.188 6 C -0.108 4.108 7 C 0.113 3.887 8 N -1.105 6.105 9 S 2.719 3.281 10 O -0.988 6.988 11 O -0.995 6.995 12 C -0.637 4.637 13 C -0.149 4.149 14 C -0.121 4.121 15 C -0.141 4.141 16 C 0.063 3.937 17 C -0.498 4.498 18 H 0.078 0.922 19 C 0.039 3.961 20 N -0.820 5.820 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.263 1.263 24 H -0.263 1.263 25 C -0.145 4.145 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.427 0.573 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.292 0.708 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 1.057 12.753 16.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.321 6.321 3 C 0.069 3.931 4 C -0.229 4.229 5 C -0.245 4.245 6 C -0.147 4.147 7 C -0.012 4.012 8 N -0.868 5.868 9 S 2.811 3.189 10 O -0.978 6.978 11 O -0.986 6.986 12 C -0.726 4.726 13 C -0.169 4.169 14 C -0.140 4.140 15 C -0.160 4.160 16 C 0.060 3.940 17 C -0.527 4.527 18 H 0.096 0.904 19 C -0.176 4.176 20 N -0.445 5.445 21 Si 0.803 3.197 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.188 1.188 25 C -0.166 4.166 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.264 0.736 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.132 0.868 43 H 0.103 0.897 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.899 0.172 12.705 16.107 hybrid contribution 0.199 1.292 -1.056 1.680 sum -9.700 1.464 11.650 15.230 Atomic orbital electron populations 1.22937 0.80477 1.03373 1.00941 1.87973 1.20879 1.28094 1.95196 1.21544 0.92709 0.83348 0.95480 1.22359 1.02477 1.01189 0.96906 1.22564 1.02576 1.01444 0.97943 1.21807 0.93301 1.02910 0.96682 1.21488 0.77551 1.02129 1.00069 1.55175 1.15852 1.66170 1.49576 1.00757 0.71845 0.73140 0.73128 1.93494 1.75757 1.41455 1.87129 1.93498 1.32270 1.87036 1.85773 1.30226 1.05599 1.13366 1.23374 1.20441 0.97090 1.02757 0.96647 1.21126 0.99431 0.97479 0.96010 1.21636 0.96808 0.97624 0.99959 1.18036 0.93161 0.91889 0.90896 1.19879 0.97790 1.14806 1.20197 0.90393 1.26717 0.97569 0.96396 0.96966 1.69818 1.16431 1.29226 1.29067 0.85154 0.78756 0.77975 0.77854 1.18439 1.18736 1.18758 1.20864 0.99478 0.99974 0.96271 0.89236 0.92487 0.93405 0.90194 0.91239 0.91541 0.92579 0.91092 0.90473 0.89693 0.87880 0.91592 0.90802 0.73642 0.85388 0.85595 0.86834 0.89722 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.21 113.37 1.16 1.45 16 2 O -0.40 -8.85 9.88 -148.98 -1.47 -10.32 16 3 C 0.11 2.02 0.82 -10.79 -0.01 2.01 16 4 C -0.17 -2.32 8.25 71.98 0.59 -1.72 16 5 C -0.19 -3.54 7.76 71.98 0.56 -2.98 16 6 C -0.11 -2.11 4.65 30.59 0.14 -1.97 16 7 C 0.11 2.98 5.63 86.38 0.49 3.47 16 8 N -1.11 -31.34 6.00 -187.48 -1.12 -32.47 16 9 S 2.72 102.44 5.73 -56.49 -0.32 102.12 16 10 O -0.99 -40.55 16.74 -128.00 -2.14 -42.69 16 11 O -1.00 -42.04 17.27 -128.00 -2.21 -44.25 16 12 C -0.64 -28.05 5.94 22.22 0.13 -27.91 16 13 C -0.15 -6.39 9.53 22.46 0.21 -6.18 16 14 C -0.12 -5.42 10.02 22.22 0.22 -5.20 16 15 C -0.14 -7.14 8.70 22.73 0.20 -6.94 16 16 C 0.06 3.38 5.58 -21.29 -0.12 3.26 16 17 C -0.50 -26.33 9.05 23.46 0.21 -26.12 16 18 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 19 C 0.04 1.91 5.14 85.25 0.44 2.34 16 20 N -0.82 -40.67 10.95 21.83 0.24 -40.43 16 21 Si 0.98 36.91 29.60 68.60 2.03 38.94 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 25 C -0.14 -7.15 9.26 22.73 0.21 -6.94 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 27 H 0.06 0.71 6.42 -2.39 -0.02 0.69 16 28 H 0.05 0.71 6.42 -2.39 -0.02 0.70 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.82 6.54 -2.39 -0.02 0.80 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.27 6.34 -2.39 -0.02 1.25 16 33 H 0.07 1.14 6.54 -2.39 -0.02 1.13 16 34 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.82 6.34 -2.39 -0.02 1.80 16 38 H 0.07 2.14 7.43 -2.39 -0.02 2.13 16 39 H 0.43 9.64 8.65 -96.74 -0.84 8.80 16 40 H 0.13 4.89 7.61 -2.91 -0.02 4.87 16 41 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 42 H 0.11 5.91 6.15 -2.91 -0.02 5.89 16 43 H 0.29 12.94 8.30 -92.70 -0.77 12.17 16 44 H 0.11 5.30 7.60 -2.91 -0.02 5.28 16 Total: -1.00 -66.92 367.21 -0.39 -67.31 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.18 Total: 35.21 kcal Atomic # 6 Polarization: -77.86 SS G_CDS: 4.44 Total: -73.42 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -0.89 Total: -72.89 kcal Atomic # 8 Polarization: -91.44 SS G_CDS: -5.83 Total: -97.26 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Atomic # 16 Polarization: 102.44 SS G_CDS: -0.32 Total: 102.12 kcal Total: -66.92 -0.39 -67.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867727668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.117 kcal (2) G-P(sol) polarization free energy of solvation -66.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds