Wall clock time and date at job start Tue Mar 31 2020 15:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46987 * 2 1 4 4 H 1.08997 * 109.47005 * 304.96680 * 3 2 1 5 5 C 1.53001 * 109.46929 * 64.96563 * 3 2 1 6 6 O 1.42900 * 109.47113 * 54.99923 * 5 3 2 7 7 C 1.42896 * 114.00134 * 179.97438 * 6 5 3 8 8 N 1.46501 * 109.47118 * 184.96535 * 3 2 1 9 9 S 1.65597 * 119.99714 * 96.21428 * 8 3 2 10 10 O 1.42108 * 106.40092 * 178.89847 * 9 8 3 11 11 O 1.42100 * 106.40454 * 311.82026 * 9 8 3 12 12 C 1.76197 * 107.21620 * 65.36094 * 9 8 3 13 13 C 1.38232 * 120.00011 * 269.72099 * 12 9 8 14 14 C 1.38239 * 119.99735 * 179.76834 * 13 12 9 15 15 C 1.38227 * 120.00191 * 0.48415 * 14 13 12 16 16 C 1.50703 * 120.00038 * 179.76626 * 15 14 13 17 17 C 1.50694 * 109.47469 * 270.02415 * 16 15 14 18 18 H 1.08000 * 119.99906 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00462 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00645 * 180.02562 * 19 17 16 21 21 Si 1.86810 * 119.99656 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46884 * 89.99778 * 21 19 17 23 23 H 1.48498 * 109.46883 * 210.00173 * 21 19 17 24 24 H 1.48500 * 109.46794 * 329.99735 * 21 19 17 25 25 C 1.38237 * 120.00115 * 359.79534 * 15 14 13 26 26 C 1.38230 * 119.99859 * 359.95033 * 25 15 14 27 27 H 1.09003 * 109.47100 * 294.17045 * 1 2 3 28 28 H 1.08995 * 109.46687 * 174.17283 * 1 2 3 29 29 H 1.08997 * 109.47144 * 54.17179 * 1 2 3 30 30 H 1.08999 * 109.47137 * 120.00011 * 2 1 3 31 31 H 1.09001 * 109.47342 * 240.00368 * 2 1 3 32 32 H 1.09001 * 109.47007 * 174.99787 * 5 3 2 33 33 H 1.09000 * 109.47301 * 295.00362 * 5 3 2 34 34 H 1.09007 * 109.47014 * 299.99804 * 7 6 5 35 35 H 1.09000 * 109.47161 * 59.99771 * 7 6 5 36 36 H 1.08999 * 109.47239 * 180.02562 * 7 6 5 37 37 H 0.96996 * 119.99746 * 276.22107 * 8 3 2 38 38 H 1.07998 * 119.99813 * 359.97438 * 13 12 9 39 39 H 1.08005 * 119.99415 * 180.25452 * 14 13 12 40 40 H 1.08996 * 109.46935 * 30.02974 * 16 15 14 41 41 H 1.09000 * 109.47035 * 150.02609 * 16 15 14 42 42 H 0.96997 * 120.00609 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.00014 * 179.97438 * 25 15 14 44 44 H 1.08005 * 119.99994 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6058 1.9814 -0.8421 5 6 1.6345 2.1269 1.3070 6 8 2.1054 1.3560 2.4143 7 6 1.7783 1.9109 3.6898 8 7 3.5001 1.4444 -0.1195 9 16 4.2091 1.6417 -1.6030 10 8 5.6129 1.6236 -1.3824 11 8 3.5494 0.7444 -2.4856 12 6 3.8136 3.2665 -2.1581 13 6 2.6732 3.4819 -2.9090 14 6 2.3604 4.7574 -3.3404 15 6 3.1933 5.8159 -3.0294 16 6 2.8550 7.2056 -3.5042 17 6 3.4779 7.4401 -4.8562 18 1 4.0602 6.6607 -5.3250 19 6 3.3037 8.6494 -5.4952 20 7 3.8469 8.8539 -6.6752 21 14 2.2960 9.9974 -4.6846 22 1 3.1849 10.8473 -3.8523 23 1 1.6517 10.8309 -5.7311 24 1 1.2503 9.3853 -3.8260 25 6 4.3367 5.5996 -2.2833 26 6 4.6468 4.3250 -1.8474 27 1 -0.3633 0.4208 0.9376 28 1 -0.3632 -1.0223 -0.1043 29 1 -0.3633 0.6015 -0.8332 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0726 3.1242 1.3461 33 1 0.5483 2.2049 1.3545 34 1 2.2198 2.9037 3.7782 35 1 0.6952 1.9850 3.7869 36 1 2.1710 1.2678 4.4774 37 1 4.0515 1.3299 0.6702 38 1 2.0249 2.6541 -3.1558 39 1 1.4673 4.9263 -3.9237 40 1 1.7727 7.3103 -3.5797 41 1 3.2421 7.9364 -2.7941 42 1 3.7240 9.7045 -7.1250 43 1 4.9876 6.4266 -2.0406 44 1 5.5404 4.1559 -1.2649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885020982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:20 Heat of formation + Delta-G solvation = -134.710038 kcal Electronic energy + Delta-G solvation = -25993.402267 eV Core-core repulsion = 22229.337276 eV Total energy + Delta-G solvation = -3764.064991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.27092 -39.53780 -38.34064 -36.98617 -36.82219 -35.54502 -33.55846 -33.09925 -31.97849 -29.71709 -29.34179 -26.90406 -25.29248 -24.95265 -23.76936 -22.32026 -21.61496 -20.63516 -19.08527 -19.02995 -18.47870 -17.69432 -17.12414 -16.78052 -16.70871 -16.34843 -16.01641 -15.87355 -15.59634 -15.32440 -14.86630 -14.62901 -14.47543 -14.22684 -14.03735 -13.81256 -13.62206 -13.45014 -13.25397 -13.17046 -13.11935 -12.76347 -12.58754 -12.54021 -12.45956 -12.40119 -12.07501 -11.99894 -11.93330 -11.72189 -11.57293 -11.42147 -10.83001 -10.53503 -10.46724 -9.97064 -9.94341 -8.33716 -6.41234 -0.64161 -0.09248 0.38423 1.36312 1.38043 1.49441 1.99609 2.32525 2.52776 2.74441 2.93317 3.00795 3.31268 3.73711 3.86110 3.96781 3.99911 4.07640 4.22540 4.28671 4.45965 4.47356 4.49251 4.53646 4.59490 4.65416 4.67752 4.77787 4.85062 4.93757 4.99587 5.00239 5.04341 5.09054 5.17041 5.28192 5.29532 5.36108 5.49281 5.55837 5.77280 5.92960 6.09160 6.18836 6.26376 6.65701 7.22848 8.82811 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.003141 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.386389 B = 8912.662387 C = 9553.391587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.150 3.850 4 H 0.104 0.896 5 C 0.053 3.947 6 O -0.401 6.401 7 C 0.026 3.974 8 N -1.097 6.097 9 S 2.720 3.280 10 O -0.989 6.989 11 O -0.979 6.979 12 C -0.699 4.699 13 C -0.023 4.023 14 C -0.151 4.151 15 C -0.001 4.001 16 C 0.012 3.988 17 C -0.527 4.527 18 H 0.026 0.974 19 C 0.009 3.991 20 N -0.948 5.948 21 Si 0.954 3.046 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.240 1.240 25 C -0.154 4.154 26 C -0.022 4.022 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.429 0.571 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.043 0.957 41 H 0.039 0.961 42 H 0.269 0.731 43 H 0.134 0.866 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 -14.797 22.151 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.043 3.957 4 H 0.122 0.878 5 C -0.025 4.025 6 O -0.320 6.320 7 C -0.070 4.070 8 N -0.858 5.858 9 S 2.810 3.190 10 O -0.979 6.979 11 O -0.968 6.968 12 C -0.786 4.786 13 C -0.042 4.042 14 C -0.170 4.170 15 C -0.002 4.002 16 C -0.025 4.025 17 C -0.565 4.565 18 H 0.044 0.956 19 C -0.189 4.189 20 N -0.588 5.588 21 Si 0.776 3.224 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.163 1.163 25 C -0.173 4.173 26 C -0.041 4.041 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.266 0.734 38 H 0.175 0.825 39 H 0.155 0.845 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.151 0.849 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.010 -15.443 21.390 27.572 hybrid contribution -0.090 1.815 -0.129 1.822 sum -8.100 -13.628 21.261 26.521 Atomic orbital electron populations 1.21776 0.93973 1.02633 1.02412 1.21958 0.97252 0.95619 1.03036 1.21156 0.78366 0.97958 0.98199 0.87849 1.22878 0.99874 0.94292 0.85436 1.87829 1.79321 1.50246 1.14583 1.22891 1.00412 0.99228 0.84499 1.55292 1.15143 1.89239 1.26162 1.00936 0.72073 0.73183 0.72768 1.93537 1.31272 1.87499 1.85639 1.93546 1.76451 1.61822 1.65018 1.30776 1.07115 1.23056 1.17645 1.21078 0.93872 0.97498 0.91750 1.21364 1.01485 0.92508 1.01630 1.20593 0.92967 0.96782 0.89827 1.18827 0.97862 0.90794 0.95047 1.21074 1.32897 1.00019 1.02473 0.95582 1.26019 0.96545 1.01175 0.95137 1.70056 1.46414 1.25909 1.16426 0.85611 0.79758 0.78380 0.78640 1.18960 1.21014 1.16280 1.21352 0.97558 0.98011 1.00347 1.21019 0.96918 0.91278 0.94869 0.91668 0.92008 0.92109 0.90523 0.91971 0.92069 0.90018 0.93708 0.93074 0.88771 0.73386 0.82464 0.84545 0.93896 0.94251 0.92214 0.84858 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.52 71.98 0.69 -1.19 16 2 C -0.14 -2.24 5.61 30.60 0.17 -2.07 16 3 C 0.15 2.39 2.65 44.99 0.12 2.51 16 4 H 0.10 1.52 7.29 -2.39 -0.02 1.51 16 5 C 0.05 0.69 5.37 71.98 0.39 1.08 16 6 O -0.40 -5.71 9.44 -148.98 -1.41 -7.12 16 7 C 0.03 0.25 11.01 113.37 1.25 1.50 16 8 N -1.10 -20.11 5.46 -169.37 -0.92 -21.04 16 9 S 2.72 69.95 5.64 -56.49 -0.32 69.63 16 10 O -0.99 -30.77 17.28 -128.00 -2.21 -32.98 16 11 O -0.98 -29.26 16.61 -128.00 -2.13 -31.38 16 12 C -0.70 -20.06 5.85 22.27 0.13 -19.93 16 13 C -0.02 -0.67 8.95 22.27 0.20 -0.47 16 14 C -0.15 -5.17 9.70 22.27 0.22 -4.95 16 15 C 0.00 -0.05 5.07 -19.87 -0.10 -0.15 16 16 C 0.01 0.52 4.17 29.10 0.12 0.65 16 17 C -0.53 -29.57 9.65 25.60 0.25 -29.32 16 18 H 0.03 1.66 7.98 -2.91 -0.02 1.64 16 19 C 0.01 0.49 5.47 84.65 0.46 0.96 16 20 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 21 Si 0.95 41.86 27.47 68.60 1.88 43.74 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 25 C -0.15 -5.40 9.70 22.27 0.22 -5.19 16 26 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 27 H 0.06 0.67 6.98 -2.39 -0.02 0.66 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 1.25 7.40 -2.39 -0.02 1.23 16 31 H 0.06 1.20 7.72 -2.39 -0.02 1.19 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.79 6.95 -2.39 -0.02 0.78 16 34 H 0.04 0.40 8.14 -2.38 -0.02 0.38 16 35 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.43 6.72 8.59 -96.75 -0.83 5.89 16 38 H 0.16 3.70 7.61 -2.91 -0.02 3.67 16 39 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 40 H 0.04 1.80 7.14 -2.39 -0.02 1.79 16 41 H 0.04 1.65 7.51 -2.39 -0.02 1.63 16 42 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 44 H 0.15 3.91 7.62 -2.91 -0.02 3.88 16 Total: -1.00 -74.07 374.94 -0.38 -74.45 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.11 Total: 19.92 kcal Atomic # 6 Polarization: -61.34 SS G_CDS: 4.32 Total: -57.02 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -0.62 Total: -79.25 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: -5.75 Total: -71.49 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.88 Total: 43.74 kcal Atomic # 16 Polarization: 69.95 SS G_CDS: -0.32 Total: 69.63 kcal Total: -74.07 -0.38 -74.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885020982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.258 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds