Wall clock time and date at job start Tue Mar 31 2020 15:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47414 * 2 1 4 4 N 1.46504 * 109.47341 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00105 * 275.00262 * 4 3 2 6 6 C 1.53000 * 109.47112 * 274.99584 * 5 4 3 7 7 O 1.42900 * 109.46708 * 65.00451 * 6 5 4 8 8 S 1.65599 * 119.99733 * 94.99890 * 4 3 2 9 9 O 1.42101 * 106.40542 * 336.46350 * 8 4 3 10 10 O 1.42098 * 106.40229 * 203.54114 * 8 4 3 11 11 C 1.76203 * 107.21703 * 90.00233 * 8 4 3 12 12 C 1.38233 * 120.00082 * 90.00045 * 11 8 4 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38232 * 119.99735 * 359.49690 * 24 14 13 26 26 H 1.08995 * 109.46875 * 59.99489 * 1 2 3 27 27 H 1.08993 * 109.47292 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46496 * 299.99998 * 1 2 3 29 29 H 1.09004 * 109.46995 * 239.99836 * 2 1 3 30 30 H 1.09003 * 109.47222 * 120.00397 * 2 1 3 31 31 H 1.09004 * 109.47173 * 59.99945 * 3 2 1 32 32 H 1.09003 * 109.47250 * 300.00380 * 3 2 1 33 33 H 1.09003 * 109.47315 * 34.99702 * 5 4 3 34 34 H 1.09008 * 109.46929 * 154.99951 * 5 4 3 35 35 H 1.08995 * 109.46977 * 185.00109 * 6 5 4 36 36 H 1.09001 * 109.47493 * 305.00399 * 6 5 4 37 37 H 0.96703 * 113.99686 * 180.02562 * 7 6 5 38 38 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 39 39 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 41 41 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 42 42 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 44 44 H 1.08008 * 119.99912 * 180.25278 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.3320 1.2648 6 6 4.3831 2.7196 1.8925 7 8 3.0923 3.2208 2.2456 8 16 4.3337 1.5672 -1.4278 9 8 3.4524 1.1095 -2.4442 10 8 5.6165 1.0007 -1.1983 11 6 4.5946 3.2832 -1.7312 12 6 5.7335 3.9042 -1.2535 13 6 5.9385 5.2503 -1.4920 14 6 5.0043 5.9755 -2.2077 15 6 5.2276 7.4431 -2.4672 16 6 5.9809 7.6156 -3.7609 17 1 6.2696 6.7491 -4.3374 18 6 6.3071 8.8793 -4.2055 19 7 6.9694 9.0296 -5.3318 20 14 5.8083 10.3780 -3.2082 21 1 6.8855 10.7101 -2.2414 22 1 5.5896 11.5293 -4.1203 23 1 4.5534 10.0860 -2.4699 24 6 3.8627 5.3558 -2.6805 25 6 3.6602 4.0086 -2.4464 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.6894 0.6808 1.9461 34 1 5.2255 0.9124 1.0769 35 1 5.0030 2.6507 2.7863 36 1 4.8516 3.3949 1.1765 37 1 3.1084 4.0992 2.6497 38 1 6.4632 3.3377 -0.6940 39 1 6.8282 5.7355 -1.1184 40 1 5.8063 7.8728 -1.6495 41 1 4.2652 7.9502 -2.5368 42 1 7.1985 9.9187 -5.6447 43 1 3.1306 5.9234 -3.2358 44 1 2.7702 3.5235 -2.8193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885022324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:12 Heat of formation + Delta-G solvation = -111.142350 kcal Electronic energy + Delta-G solvation = -26411.300766 eV Core-core repulsion = 22648.257747 eV Total energy + Delta-G solvation = -3763.043019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.91460 -38.06363 -37.27547 -36.11076 -35.74898 -33.70425 -33.17320 -31.75543 -30.67244 -29.33491 -27.98447 -25.72570 -23.55672 -22.84944 -22.44919 -21.58205 -20.69836 -18.93763 -18.15719 -17.57370 -17.09791 -16.92917 -16.58712 -15.40172 -15.15507 -14.97171 -14.77961 -14.42591 -14.30598 -14.01055 -13.81725 -13.52449 -13.18861 -13.01347 -12.79186 -12.64387 -12.59111 -12.21543 -12.01259 -11.98926 -11.90819 -11.79418 -11.65924 -11.45542 -11.43660 -11.00874 -10.94014 -10.75191 -10.55258 -10.26999 -10.19311 -10.09841 -9.56761 -9.17752 -8.72268 -8.64772 -8.44582 -6.20261 -4.21937 0.44344 1.25704 1.71243 2.94175 3.18213 3.26889 3.27571 3.74857 4.00698 4.03090 4.28701 4.33840 4.53916 4.80271 4.88779 4.95949 5.03315 5.07572 5.12117 5.15824 5.18046 5.20481 5.40385 5.55248 5.55691 5.64450 5.67874 5.72880 5.77943 5.80465 5.86726 6.12854 6.13987 6.14739 6.22495 6.39489 6.49926 6.67790 6.68993 6.78888 7.27606 7.28167 7.38909 7.51802 8.32845 8.83439 9.37872 10.92303 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.003231 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.618690 B = 8662.856229 C = 8883.346626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.126 3.874 4 N -0.991 5.991 5 C 0.117 3.883 6 C 0.050 3.950 7 O -0.567 6.567 8 S 2.690 3.310 9 O -0.959 6.959 10 O -0.965 6.965 11 C -0.699 4.699 12 C -0.025 4.025 13 C -0.143 4.143 14 C 0.030 3.970 15 C 0.007 3.993 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.879 3.121 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.142 4.142 25 C -0.020 4.020 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.378 0.622 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.266 0.734 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 -14.540 16.945 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.001 3.999 4 N -0.827 5.827 5 C -0.009 4.009 6 C -0.029 4.029 7 O -0.372 6.372 8 S 2.784 3.216 9 O -0.949 6.949 10 O -0.955 6.955 11 C -0.788 4.788 12 C -0.045 4.045 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.030 4.030 16 C -0.558 4.558 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.706 3.294 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.161 4.161 25 C -0.040 4.040 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.225 0.775 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.147 0.853 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.616 -15.691 16.053 24.421 hybrid contribution 0.147 2.292 0.650 2.387 sum -9.469 -13.399 16.703 23.413 Atomic orbital electron populations 1.21683 0.95149 1.01813 1.02049 1.21977 0.96306 0.97556 1.02601 1.21393 0.77630 0.96860 1.04062 1.57484 1.15252 1.88556 1.21439 1.21480 0.98146 0.96024 0.85266 1.22804 0.85341 0.96063 0.98713 1.86447 1.29023 1.38024 1.83706 1.01900 0.72952 0.74359 0.72433 1.93558 1.66096 1.79813 1.55421 1.93535 1.40256 1.76566 1.85168 1.30467 1.05588 1.25621 1.17081 1.20728 0.93858 0.94889 0.95018 1.21200 1.00003 0.93761 1.01235 1.20678 0.90791 0.98100 0.87436 1.18977 0.98158 0.87490 0.98414 1.20823 1.36099 0.94449 1.04435 0.90667 1.24989 0.94329 0.98855 0.94862 1.69890 1.38985 1.23342 1.20975 0.86787 0.79658 0.82643 0.80308 1.20053 1.21045 1.18946 1.21214 0.98892 0.94376 1.01586 1.20758 0.96412 0.94148 0.92644 0.92347 0.92605 0.92601 0.91342 0.91788 0.88842 0.90389 0.89250 0.87556 0.92616 0.92941 0.77518 0.85326 0.85324 0.95310 0.94830 0.92353 0.85269 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.15 -1.33 6.26 -26.73 -0.17 -1.50 16 3 C 0.13 1.25 5.18 -4.04 -0.02 1.23 16 4 N -0.99 -10.81 2.77 -114.37 -0.32 -11.12 16 5 C 0.12 1.03 6.13 -4.04 -0.02 1.00 16 6 C 0.05 0.41 7.39 37.16 0.27 0.69 16 7 O -0.57 -4.78 11.98 -35.23 -0.42 -5.20 16 8 S 2.69 38.45 5.65 -107.50 -0.61 37.84 16 9 O -0.96 -15.72 16.26 -57.17 -0.93 -16.65 16 10 O -0.96 -15.43 15.84 -57.17 -0.91 -16.34 16 11 C -0.70 -10.95 5.97 -39.58 -0.24 -11.18 16 12 C -0.03 -0.40 8.37 -39.58 -0.33 -0.73 16 13 C -0.14 -2.54 9.70 -39.58 -0.38 -2.92 16 14 C 0.03 0.60 5.07 -104.62 -0.53 0.07 16 15 C 0.01 0.15 4.17 -29.03 -0.12 0.03 16 16 C -0.52 -14.26 9.65 -34.44 -0.33 -14.60 16 17 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.89 -26.77 13.96 55.43 0.77 -25.99 16 20 Si 0.88 20.50 27.46 -169.99 -4.67 15.84 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.26 -5.85 6.55 56.52 0.37 -5.48 16 24 C -0.14 -2.56 9.70 -39.59 -0.38 -2.95 16 25 C -0.02 -0.33 9.52 -39.58 -0.38 -0.70 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.87 6.60 -51.93 -0.34 0.53 16 32 H 0.08 0.80 7.61 -51.93 -0.40 0.41 16 33 H 0.09 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.11 0.90 6.91 -51.92 -0.36 0.54 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.49 6.95 -51.93 -0.36 0.13 16 37 H 0.38 1.96 9.12 45.56 0.42 2.37 16 38 H 0.13 1.72 7.62 -52.49 -0.40 1.32 16 39 H 0.13 2.12 8.06 -52.48 -0.42 1.70 16 40 H 0.03 0.62 7.51 -51.93 -0.39 0.23 16 41 H 0.03 0.74 7.15 -51.93 -0.37 0.37 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 44 H 0.13 1.82 7.62 -52.48 -0.40 1.42 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -33.94 373.64 -9.80 -43.74 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.99 Total: 2.67 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: -2.36 Total: -30.41 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.46 Total: -37.12 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -2.26 Total: -38.19 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 38.45 SS G_CDS: -0.61 Total: 37.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.94 -9.80 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885022324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.399 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds