Wall clock time and date at job start Tue Mar 31 2020 15:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47414 * 2 1 4 4 N 1.46504 * 109.47341 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00105 * 275.00262 * 4 3 2 6 6 C 1.53000 * 109.47112 * 274.99584 * 5 4 3 7 7 O 1.42900 * 109.46708 * 65.00451 * 6 5 4 8 8 S 1.65599 * 119.99733 * 94.99890 * 4 3 2 9 9 O 1.42101 * 106.40542 * 336.46350 * 8 4 3 10 10 O 1.42098 * 106.40229 * 203.54114 * 8 4 3 11 11 C 1.76203 * 107.21703 * 90.00233 * 8 4 3 12 12 C 1.38233 * 120.00082 * 90.00045 * 11 8 4 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38232 * 119.99735 * 359.49690 * 24 14 13 26 26 H 1.08995 * 109.46875 * 59.99489 * 1 2 3 27 27 H 1.08993 * 109.47292 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46496 * 299.99998 * 1 2 3 29 29 H 1.09004 * 109.46995 * 239.99836 * 2 1 3 30 30 H 1.09003 * 109.47222 * 120.00397 * 2 1 3 31 31 H 1.09004 * 109.47173 * 59.99945 * 3 2 1 32 32 H 1.09003 * 109.47250 * 300.00380 * 3 2 1 33 33 H 1.09003 * 109.47315 * 34.99702 * 5 4 3 34 34 H 1.09008 * 109.46929 * 154.99951 * 5 4 3 35 35 H 1.08995 * 109.46977 * 185.00109 * 6 5 4 36 36 H 1.09001 * 109.47493 * 305.00399 * 6 5 4 37 37 H 0.96703 * 113.99686 * 180.02562 * 7 6 5 38 38 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 39 39 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 41 41 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 42 42 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 44 44 H 1.08008 * 119.99912 * 180.25278 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.3320 1.2648 6 6 4.3831 2.7196 1.8925 7 8 3.0923 3.2208 2.2456 8 16 4.3337 1.5672 -1.4278 9 8 3.4524 1.1095 -2.4442 10 8 5.6165 1.0007 -1.1983 11 6 4.5946 3.2832 -1.7312 12 6 5.7335 3.9042 -1.2535 13 6 5.9385 5.2503 -1.4920 14 6 5.0043 5.9755 -2.2077 15 6 5.2276 7.4431 -2.4672 16 6 5.9809 7.6156 -3.7609 17 1 6.2696 6.7491 -4.3374 18 6 6.3071 8.8793 -4.2055 19 7 6.9694 9.0296 -5.3318 20 14 5.8083 10.3780 -3.2082 21 1 6.8855 10.7101 -2.2414 22 1 5.5896 11.5293 -4.1203 23 1 4.5534 10.0860 -2.4699 24 6 3.8627 5.3558 -2.6805 25 6 3.6602 4.0086 -2.4464 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.6894 0.6808 1.9461 34 1 5.2255 0.9124 1.0769 35 1 5.0030 2.6507 2.7863 36 1 4.8516 3.3949 1.1765 37 1 3.1084 4.0992 2.6497 38 1 6.4632 3.3377 -0.6940 39 1 6.8282 5.7355 -1.1184 40 1 5.8063 7.8728 -1.6495 41 1 4.2652 7.9502 -2.5368 42 1 7.1985 9.9187 -5.6447 43 1 3.1306 5.9234 -3.2358 44 1 2.7702 3.5235 -2.8193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885022324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:12 Heat of formation + Delta-G solvation = -135.613467 kcal Electronic energy + Delta-G solvation = -26412.361913 eV Core-core repulsion = 22648.257747 eV Total energy + Delta-G solvation = -3764.104166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.28214 -38.78778 -38.47616 -37.03173 -36.74583 -35.55615 -33.88654 -33.55698 -32.00339 -30.02711 -29.72284 -26.46459 -25.29975 -23.78294 -23.58544 -22.37833 -22.23153 -20.01941 -19.08649 -19.03963 -18.64649 -17.89998 -17.51996 -16.77344 -16.51937 -16.01641 -15.85340 -15.64808 -15.47419 -15.23604 -14.73317 -14.55784 -14.49380 -14.23296 -14.16681 -13.77671 -13.63960 -13.50072 -13.43863 -13.22556 -13.16302 -12.73024 -12.60386 -12.55603 -12.38360 -12.27030 -12.10078 -12.08634 -11.94380 -11.73182 -11.57831 -11.43367 -10.83777 -10.82803 -10.06724 -9.97885 -9.87644 -8.34581 -6.42163 -0.69458 -0.09616 0.36711 1.35362 1.37547 1.48904 1.90315 2.31815 2.52910 2.73962 2.99815 3.19863 3.47069 3.73296 3.82283 3.93547 4.06029 4.12935 4.19177 4.30088 4.37323 4.43577 4.44336 4.52181 4.59520 4.74606 4.76239 4.82649 4.89286 4.97987 4.98607 5.02209 5.07229 5.09592 5.14933 5.24533 5.26515 5.40043 5.46635 5.48196 5.67013 5.75556 5.91583 6.17937 6.64593 6.94649 7.21906 8.81988 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.003231 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.618690 B = 8662.856229 C = 8883.346626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.122 3.878 4 N -0.981 5.981 5 C 0.107 3.893 6 C 0.050 3.950 7 O -0.579 6.579 8 S 2.707 3.293 9 O -0.981 6.981 10 O -0.981 6.981 11 C -0.698 4.698 12 C -0.022 4.022 13 C -0.151 4.151 14 C -0.001 4.001 15 C 0.013 3.987 16 C -0.527 4.527 17 H 0.025 0.975 18 C 0.009 3.991 19 N -0.948 5.948 20 Si 0.954 3.046 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.241 1.241 24 C -0.153 4.153 25 C -0.023 4.023 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.391 0.609 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.269 0.731 43 H 0.133 0.867 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 -14.955 19.892 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.003 4.003 4 N -0.820 5.820 5 C -0.018 4.018 6 C -0.030 4.030 7 O -0.387 6.387 8 S 2.799 3.201 9 O -0.971 6.971 10 O -0.971 6.971 11 C -0.785 4.785 12 C -0.041 4.041 13 C -0.170 4.170 14 C -0.002 4.002 15 C -0.024 4.024 16 C -0.565 4.565 17 H 0.044 0.956 18 C -0.189 4.189 19 N -0.588 5.588 20 Si 0.777 3.223 21 H -0.187 1.187 22 H -0.210 1.210 23 H -0.165 1.165 24 C -0.172 4.172 25 C -0.042 4.042 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.241 0.759 38 H 0.172 0.828 39 H 0.154 0.846 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.151 0.849 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.853 -16.098 19.013 27.174 hybrid contribution 0.519 2.242 -0.245 2.314 sum -10.334 -13.856 18.768 25.515 Atomic orbital electron populations 1.21684 0.94047 1.02469 1.02391 1.21980 0.97291 0.96797 1.02351 1.21552 0.76785 0.97595 1.04344 1.57269 1.15625 1.87991 1.21067 1.21779 0.98447 0.97141 0.84388 1.22802 0.85590 0.95184 0.99406 1.86398 1.29182 1.39192 1.83941 1.01362 0.72489 0.73448 0.72820 1.93527 1.66509 1.79875 1.57193 1.93509 1.41437 1.76546 1.85626 1.30868 1.05161 1.26557 1.15915 1.20992 0.94269 0.94247 0.94584 1.21346 0.99853 0.94659 1.01133 1.20574 0.92557 0.97082 0.89951 1.18818 0.97657 0.89935 0.96007 1.21069 1.36335 0.92978 1.06112 0.95622 1.26023 0.94171 1.02672 0.96010 1.70061 1.40999 1.24359 1.23358 0.85601 0.80459 0.77566 0.78705 1.18749 1.21019 1.16457 1.21336 0.98731 0.95354 1.01737 1.20986 0.97301 0.93512 0.92369 0.92808 0.91838 0.91478 0.93081 0.90548 0.87696 0.90948 0.87214 0.87197 0.90213 0.94229 0.75941 0.82787 0.84576 0.94074 0.94146 0.92198 0.84897 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.14 -2.37 6.26 30.59 0.19 -2.18 16 3 C 0.12 2.18 5.18 86.38 0.45 2.63 16 4 N -0.98 -19.38 2.77 -515.77 -1.43 -20.81 16 5 C 0.11 1.59 6.13 86.38 0.53 2.12 16 6 C 0.05 0.67 7.39 71.98 0.53 1.21 16 7 O -0.58 -8.13 11.98 -148.98 -1.78 -9.92 16 8 S 2.71 73.79 5.65 -56.49 -0.32 73.47 16 9 O -0.98 -31.34 16.26 -128.00 -2.08 -33.42 16 10 O -0.98 -29.93 15.84 -128.00 -2.03 -31.96 16 11 C -0.70 -21.11 5.97 22.27 0.13 -20.98 16 12 C -0.02 -0.66 8.37 22.27 0.19 -0.48 16 13 C -0.15 -5.29 9.70 22.27 0.22 -5.08 16 14 C 0.00 -0.05 5.07 -19.87 -0.10 -0.15 16 15 C 0.01 0.58 4.17 29.10 0.12 0.70 16 16 C -0.53 -29.79 9.65 25.60 0.25 -29.55 16 17 H 0.03 1.64 7.98 -2.91 -0.02 1.62 16 18 C 0.01 0.50 5.47 84.65 0.46 0.96 16 19 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 20 Si 0.95 42.08 27.46 68.60 1.88 43.96 16 21 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.24 -9.64 6.55 99.48 0.65 -8.99 16 24 C -0.15 -5.52 9.70 22.27 0.22 -5.30 16 25 C -0.02 -0.71 9.52 22.27 0.21 -0.50 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.68 6.60 -2.39 -0.02 1.66 16 32 H 0.07 1.38 7.61 -2.39 -0.02 1.36 16 33 H 0.11 1.23 8.11 -2.39 -0.02 1.21 16 34 H 0.11 1.58 6.91 -2.38 -0.02 1.56 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.04 0.64 6.95 -2.39 -0.02 0.62 16 37 H 0.39 3.04 9.12 -74.06 -0.68 2.36 16 38 H 0.15 3.81 7.62 -2.91 -0.02 3.79 16 39 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 40 H 0.04 1.72 7.51 -2.39 -0.02 1.71 16 41 H 0.04 1.74 7.15 -2.38 -0.02 1.72 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 44 H 0.15 4.05 7.62 -2.91 -0.02 4.03 16 Total: -1.00 -74.68 373.64 -1.08 -75.77 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.27 Total: 19.13 kcal Atomic # 6 Polarization: -61.97 SS G_CDS: 4.11 Total: -57.86 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.13 Total: -79.18 kcal Atomic # 8 Polarization: -69.40 SS G_CDS: -5.89 Total: -75.29 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.96 kcal Atomic # 16 Polarization: 73.79 SS G_CDS: -0.32 Total: 73.47 kcal Total: -74.68 -1.08 -75.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885022324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.848 kcal (2) G-P(sol) polarization free energy of solvation -74.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds