Wall clock time and date at job start Tue Mar 31 2020 15:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 C 1.52998 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47603 * 305.00164 * 4 3 2 6 6 O 1.42901 * 109.47351 * 64.99843 * 4 3 2 7 7 C 1.53003 * 109.47367 * 184.99662 * 4 3 2 8 8 N 1.46497 * 109.47258 * 179.97438 * 7 4 3 9 9 S 1.65608 * 119.99652 * 165.00222 * 8 7 4 10 10 O 1.42104 * 106.39724 * 178.54027 * 9 8 7 11 11 O 1.42097 * 106.40199 * 311.45938 * 9 8 7 12 12 C 1.76195 * 107.21632 * 65.00196 * 9 8 7 13 13 C 1.38239 * 120.00286 * 269.72172 * 12 9 8 14 14 C 1.38237 * 120.00342 * 179.76914 * 13 12 9 15 15 C 1.38231 * 119.99516 * 0.48475 * 14 13 12 16 16 C 1.50701 * 119.99549 * 179.76799 * 15 14 13 17 17 C 1.50704 * 109.47348 * 270.02310 * 16 15 14 18 18 H 1.07998 * 119.99405 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99910 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00289 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47463 * 89.99822 * 21 19 17 23 23 H 1.48499 * 109.47262 * 209.99956 * 21 19 17 24 24 H 1.48504 * 109.47109 * 329.99894 * 21 19 17 25 25 C 1.38236 * 120.00626 * 359.79292 * 15 14 13 26 26 C 1.38237 * 119.99604 * 359.95237 * 25 15 14 27 27 H 1.09003 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47115 * 300.00084 * 1 2 3 29 29 H 1.09002 * 109.46544 * 60.00113 * 1 2 3 30 30 H 1.09001 * 109.46811 * 239.99465 * 2 1 3 31 31 H 1.09001 * 109.47053 * 120.00460 * 2 1 3 32 32 H 1.09000 * 109.47100 * 59.99906 * 3 2 1 33 33 H 1.09002 * 109.47224 * 299.99471 * 3 2 1 34 34 H 0.96703 * 113.99910 * 59.99847 * 6 4 3 35 35 H 1.09005 * 109.46550 * 60.00309 * 7 4 3 36 36 H 1.09000 * 109.47169 * 300.00768 * 7 4 3 37 37 H 0.96997 * 120.00126 * 345.00146 * 8 7 4 38 38 H 1.08001 * 119.99420 * 0.02562 * 13 12 9 39 39 H 1.07997 * 119.99605 * 180.25567 * 14 13 12 40 40 H 1.08995 * 109.47332 * 30.02592 * 16 15 14 41 41 H 1.09007 * 109.47020 * 150.02482 * 16 15 14 42 42 H 0.96996 * 120.00123 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.00172 * 179.97438 * 25 15 14 44 44 H 1.07994 * 119.99872 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9331 0.8530 0.8427 6 8 4.0469 0.8727 -1.2201 7 6 4.0801 2.8794 0.1263 8 7 5.5451 2.8792 0.1275 9 16 6.3734 4.2915 -0.1213 10 8 7.7541 3.9686 -0.0279 11 8 5.7934 4.9004 -1.2667 12 6 6.0172 5.3518 1.2401 13 6 4.9417 6.2182 1.1785 14 6 4.6593 7.0466 2.2485 15 6 5.4584 7.0159 3.3760 16 6 5.1537 7.9228 4.5404 17 6 5.8852 9.2287 4.3649 18 1 6.5080 9.3862 3.4968 19 6 5.7592 10.2222 5.3126 20 7 5.0003 10.0304 6.3694 21 14 6.6653 11.8411 5.0947 22 1 5.8066 12.7919 4.3438 23 1 6.9873 12.4114 6.4274 24 1 7.9224 11.6070 4.3395 25 6 6.5373 6.1537 3.4354 26 6 6.8165 5.3215 2.3675 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.7619 1.3470 -2.0132 35 1 3.7164 3.3138 1.0575 36 1 3.7171 3.4687 -0.7157 37 1 6.0299 2.0520 0.2741 38 1 4.3196 6.2447 0.2961 39 1 3.8166 7.7205 2.2019 40 1 4.0809 8.1103 4.5838 41 1 5.4772 7.4467 5.4661 42 1 4.9119 10.7292 7.0363 43 1 7.1619 6.1300 4.3162 44 1 7.6596 4.6482 2.4137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885027467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:47 Heat of formation + Delta-G solvation = -130.940806 kcal Electronic energy + Delta-G solvation = -25261.428616 eV Core-core repulsion = 21497.527071 eV Total energy + Delta-G solvation = -3763.901545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.84973 -38.73662 -37.13799 -35.77590 -34.82429 -34.41666 -33.70037 -31.58307 -30.60932 -29.94692 -27.45581 -26.05701 -23.75352 -22.52365 -22.25611 -21.65269 -20.91666 -19.40389 -17.88923 -17.54520 -16.94905 -16.51423 -16.44927 -15.83617 -15.22811 -15.00849 -14.95126 -14.45409 -14.39027 -14.28578 -13.84320 -13.66229 -13.27057 -13.13820 -12.84911 -12.38609 -12.27687 -12.22124 -12.03103 -11.97291 -11.94868 -11.72462 -11.67447 -11.51297 -11.16481 -11.02372 -10.98013 -10.93485 -10.55342 -10.51062 -10.31195 -9.82302 -9.72085 -9.56909 -8.62334 -8.56103 -8.41653 -6.19369 -4.24452 0.48769 1.29594 1.76109 3.03641 3.22809 3.29477 3.33887 3.74658 3.97013 4.09135 4.21050 4.35563 4.47750 4.50260 4.60384 4.78743 4.83243 5.12146 5.14597 5.16229 5.20175 5.20713 5.22732 5.43259 5.44146 5.58514 5.63683 5.69231 5.74139 5.81266 5.88082 5.88926 5.96310 6.21715 6.29864 6.47587 6.79867 6.81301 6.88048 7.26310 7.28848 7.40055 7.56020 7.75731 8.10779 8.80356 9.40682 10.90674 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.002703 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.804394 B =10357.234897 C =11566.070781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.154 4.154 4 C 0.102 3.898 5 H 0.106 0.894 6 O -0.556 6.556 7 C 0.083 3.917 8 N -1.114 6.114 9 S 2.700 3.300 10 O -0.965 6.965 11 O -0.966 6.966 12 C -0.705 4.705 13 C -0.026 4.026 14 C -0.146 4.146 15 C 0.027 3.973 16 C 0.039 3.961 17 C -0.518 4.518 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.146 4.146 26 C -0.021 4.021 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.377 0.623 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.419 0.581 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 -19.045 -11.894 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.192 4.192 4 C 0.041 3.959 5 H 0.124 0.876 6 O -0.362 6.362 7 C -0.044 4.044 8 N -0.873 5.873 9 S 2.792 3.208 10 O -0.956 6.956 11 O -0.956 6.956 12 C -0.794 4.794 13 C -0.045 4.045 14 C -0.165 4.165 15 C 0.026 3.974 16 C 0.003 3.997 17 C -0.556 4.556 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.165 4.165 26 C -0.041 4.041 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.224 0.776 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.254 0.746 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.967 -19.030 -12.074 23.314 hybrid contribution 0.038 1.383 0.505 1.473 sum -5.929 -17.647 -11.569 21.918 Atomic orbital electron populations 1.21794 0.95855 1.01655 1.01861 1.21445 0.95636 0.96072 1.02620 1.22315 0.95108 0.98270 1.03530 1.22153 0.92941 0.92381 0.88393 0.87596 1.86579 1.77110 1.56898 1.15598 1.22050 0.79870 0.99306 1.03190 1.55426 1.14941 1.25955 1.90993 1.01510 0.72690 0.72515 0.74053 1.93570 1.30951 1.83681 1.87372 1.93547 1.78866 1.76297 1.46893 1.30340 1.09499 1.20404 1.19204 1.20779 0.93527 0.92554 0.97668 1.21244 1.01531 1.00114 0.93563 1.21124 0.90133 0.90011 0.96100 1.18541 0.98261 0.92810 0.90132 1.20967 1.29045 0.98057 1.07496 0.92289 1.25003 0.95290 0.98873 0.94976 1.69942 1.38343 1.34124 1.10575 0.86476 0.80179 0.83188 0.77557 1.20434 1.21012 1.19688 1.21260 0.98697 0.97334 0.99173 1.20780 0.95706 0.96396 0.91212 0.92770 0.92687 0.92767 0.91326 0.91998 0.90425 0.91087 0.77569 0.90479 0.89893 0.74636 0.85324 0.85341 0.94719 0.94711 0.92610 0.85320 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.71 5.83 -26.73 -0.16 -0.86 16 3 C -0.15 -0.86 4.89 -26.73 -0.13 -0.99 16 4 C 0.10 0.67 3.05 -26.73 -0.08 0.59 16 5 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 6 O -0.56 -4.15 12.74 -35.23 -0.45 -4.60 16 7 C 0.08 0.65 5.89 -4.04 -0.02 0.63 16 8 N -1.11 -10.67 5.86 -10.61 -0.06 -10.74 16 9 S 2.70 36.44 5.74 -107.50 -0.62 35.83 16 10 O -0.97 -15.58 17.28 -57.17 -0.99 -16.57 16 11 O -0.97 -15.10 16.75 -57.17 -0.96 -16.06 16 12 C -0.71 -10.82 5.95 -39.58 -0.24 -11.05 16 13 C -0.03 -0.41 9.52 -39.58 -0.38 -0.78 16 14 C -0.15 -2.63 9.70 -39.58 -0.38 -3.01 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 17 C -0.52 -13.95 9.09 -34.44 -0.31 -14.26 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16 21 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 25 C -0.15 -2.68 9.70 -39.58 -0.38 -3.06 16 26 C -0.02 -0.35 9.52 -39.58 -0.38 -0.72 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.44 7.82 -51.93 -0.41 0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.38 1.85 9.05 45.56 0.41 2.26 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 37 H 0.42 3.46 8.65 -34.48 -0.30 3.16 16 38 H 0.13 1.70 7.61 -52.49 -0.40 1.30 16 39 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 41 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 44 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -33.46 383.19 -10.56 -44.02 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.10 Total: 2.62 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: -2.87 Total: -31.64 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.67 Total: -35.39 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -2.39 Total: -37.24 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 36.44 SS G_CDS: -0.62 Total: 35.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.46 -10.56 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.921 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds