Wall clock time and date at job start Tue Mar 31 2020 15:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 C 1.52998 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47603 * 305.00164 * 4 3 2 6 6 O 1.42901 * 109.47351 * 64.99843 * 4 3 2 7 7 C 1.53003 * 109.47367 * 184.99662 * 4 3 2 8 8 N 1.46497 * 109.47258 * 179.97438 * 7 4 3 9 9 S 1.65608 * 119.99652 * 165.00222 * 8 7 4 10 10 O 1.42104 * 106.39724 * 178.54027 * 9 8 7 11 11 O 1.42097 * 106.40199 * 311.45938 * 9 8 7 12 12 C 1.76195 * 107.21632 * 65.00196 * 9 8 7 13 13 C 1.38239 * 120.00286 * 269.72172 * 12 9 8 14 14 C 1.38237 * 120.00342 * 179.76914 * 13 12 9 15 15 C 1.38231 * 119.99516 * 0.48475 * 14 13 12 16 16 C 1.50701 * 119.99549 * 179.76799 * 15 14 13 17 17 C 1.50704 * 109.47348 * 270.02310 * 16 15 14 18 18 H 1.07998 * 119.99405 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99910 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00289 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47463 * 89.99822 * 21 19 17 23 23 H 1.48499 * 109.47262 * 209.99956 * 21 19 17 24 24 H 1.48504 * 109.47109 * 329.99894 * 21 19 17 25 25 C 1.38236 * 120.00626 * 359.79292 * 15 14 13 26 26 C 1.38237 * 119.99604 * 359.95237 * 25 15 14 27 27 H 1.09003 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47115 * 300.00084 * 1 2 3 29 29 H 1.09002 * 109.46544 * 60.00113 * 1 2 3 30 30 H 1.09001 * 109.46811 * 239.99465 * 2 1 3 31 31 H 1.09001 * 109.47053 * 120.00460 * 2 1 3 32 32 H 1.09000 * 109.47100 * 59.99906 * 3 2 1 33 33 H 1.09002 * 109.47224 * 299.99471 * 3 2 1 34 34 H 0.96703 * 113.99910 * 59.99847 * 6 4 3 35 35 H 1.09005 * 109.46550 * 60.00309 * 7 4 3 36 36 H 1.09000 * 109.47169 * 300.00768 * 7 4 3 37 37 H 0.96997 * 120.00126 * 345.00146 * 8 7 4 38 38 H 1.08001 * 119.99420 * 0.02562 * 13 12 9 39 39 H 1.07997 * 119.99605 * 180.25567 * 14 13 12 40 40 H 1.08995 * 109.47332 * 30.02592 * 16 15 14 41 41 H 1.09007 * 109.47020 * 150.02482 * 16 15 14 42 42 H 0.96996 * 120.00123 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.00172 * 179.97438 * 25 15 14 44 44 H 1.07994 * 119.99872 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9331 0.8530 0.8427 6 8 4.0469 0.8727 -1.2201 7 6 4.0801 2.8794 0.1263 8 7 5.5451 2.8792 0.1275 9 16 6.3734 4.2915 -0.1213 10 8 7.7541 3.9686 -0.0279 11 8 5.7934 4.9004 -1.2667 12 6 6.0172 5.3518 1.2401 13 6 4.9417 6.2182 1.1785 14 6 4.6593 7.0466 2.2485 15 6 5.4584 7.0159 3.3760 16 6 5.1537 7.9228 4.5404 17 6 5.8852 9.2287 4.3649 18 1 6.5080 9.3862 3.4968 19 6 5.7592 10.2222 5.3126 20 7 5.0003 10.0304 6.3694 21 14 6.6653 11.8411 5.0947 22 1 5.8066 12.7919 4.3438 23 1 6.9873 12.4114 6.4274 24 1 7.9224 11.6070 4.3395 25 6 6.5373 6.1537 3.4354 26 6 6.8165 5.3215 2.3675 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.7619 1.3470 -2.0132 35 1 3.7164 3.3138 1.0575 36 1 3.7171 3.4687 -0.7157 37 1 6.0299 2.0520 0.2741 38 1 4.3196 6.2447 0.2961 39 1 3.8166 7.7205 2.2019 40 1 4.0809 8.1103 4.5838 41 1 5.4772 7.4467 5.4661 42 1 4.9119 10.7292 7.0363 43 1 7.1619 6.1300 4.3162 44 1 7.6596 4.6482 2.4137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885027467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:46 Heat of formation + Delta-G solvation = -155.189969 kcal Electronic energy + Delta-G solvation = -25262.480139 eV Core-core repulsion = 21497.527071 eV Total energy + Delta-G solvation = -3764.953067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23535 -39.30346 -38.31560 -36.96710 -35.62568 -35.49363 -34.92141 -33.31988 -31.96169 -30.50142 -29.24868 -26.62797 -25.59749 -23.75061 -22.93943 -22.47785 -22.10380 -20.46461 -19.00310 -18.61019 -18.48024 -17.74978 -17.05730 -16.85789 -16.79616 -16.10476 -15.98379 -15.66250 -15.34139 -15.20272 -14.98025 -14.63595 -14.45003 -14.12410 -13.96576 -13.86691 -13.41422 -13.38280 -13.26266 -13.20626 -13.14874 -12.70283 -12.68312 -12.65855 -12.55691 -12.15134 -12.14227 -12.03916 -11.68231 -11.63553 -11.46768 -11.43678 -10.88460 -10.66086 -10.42826 -9.96437 -9.95090 -8.27937 -6.40560 -0.61937 -0.06663 0.39642 1.37783 1.38247 1.49580 2.02777 2.34256 2.57105 2.82615 3.04805 3.29723 3.55174 3.69199 3.88543 3.96390 3.99377 4.13661 4.15899 4.28553 4.32961 4.46171 4.48057 4.60832 4.69235 4.69898 4.81453 4.90647 4.91364 5.00494 5.07630 5.10998 5.13910 5.24718 5.25716 5.31478 5.33364 5.44153 5.52655 5.66465 5.86200 5.92245 6.08190 6.09360 6.71328 6.88589 7.28587 8.82126 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.002703 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.804394 B =10357.234897 C =11566.070781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.150 4.150 4 C 0.109 3.891 5 H 0.107 0.893 6 O -0.570 6.570 7 C 0.073 3.927 8 N -1.098 6.098 9 S 2.728 3.272 10 O -0.989 6.989 11 O -0.982 6.982 12 C -0.701 4.701 13 C -0.019 4.019 14 C -0.154 4.154 15 C -0.003 4.003 16 C 0.048 3.952 17 C -0.533 4.533 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.157 4.157 26 C -0.020 4.020 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.387 0.613 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.428 0.572 38 H 0.159 0.841 39 H 0.131 0.869 40 H 0.015 0.985 41 H 0.012 0.988 42 H 0.267 0.733 43 H 0.128 0.872 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 -19.830 -13.632 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.189 4.189 4 C 0.048 3.952 5 H 0.125 0.875 6 O -0.377 6.377 7 C -0.053 4.053 8 N -0.862 5.862 9 S 2.818 3.182 10 O -0.979 6.979 11 O -0.972 6.972 12 C -0.788 4.788 13 C -0.038 4.038 14 C -0.173 4.173 15 C -0.004 4.004 16 C 0.011 3.989 17 C -0.571 4.571 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.175 4.175 26 C -0.039 4.039 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.237 0.763 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.265 0.735 38 H 0.176 0.824 39 H 0.149 0.851 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.899 -19.807 -13.804 24.853 hybrid contribution -0.027 1.484 0.965 1.770 sum -5.925 -18.323 -12.840 23.145 Atomic orbital electron populations 1.21795 0.95641 1.01790 1.01955 1.21425 0.95807 0.96222 1.02229 1.22289 0.94301 0.98151 1.04148 1.22109 0.93433 0.91385 0.88278 0.87485 1.86559 1.77408 1.57448 1.16313 1.22330 0.78437 1.00528 1.04036 1.55085 1.15782 1.24757 1.90530 1.00685 0.71971 0.72524 0.73004 1.93537 1.32887 1.84053 1.87441 1.93529 1.79111 1.77253 1.47291 1.30807 1.08490 1.20156 1.19334 1.21056 0.93717 0.91326 0.97667 1.21314 1.01452 1.00862 0.93623 1.20821 0.92403 0.91270 0.95875 1.18264 0.96561 0.92868 0.91176 1.21287 1.29073 0.99501 1.07258 0.92856 1.25855 0.96057 1.02376 0.94651 1.70047 1.39665 1.35349 1.11389 0.85470 0.79004 0.79012 0.77744 1.19596 1.20339 1.19312 1.21307 0.98335 0.97707 1.00198 1.21016 0.96337 0.95929 0.90587 0.92677 0.92721 0.92527 0.91849 0.92271 0.90041 0.90272 0.76344 0.89667 0.89146 0.73491 0.82375 0.85078 0.96710 0.96933 0.92365 0.85411 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.21 5.83 30.59 0.18 -1.03 16 3 C -0.15 -1.34 4.89 30.59 0.15 -1.19 16 4 C 0.11 1.16 3.05 30.59 0.09 1.26 16 5 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 6 O -0.57 -7.16 12.74 -148.98 -1.90 -9.05 16 7 C 0.07 0.94 5.89 86.38 0.51 1.45 16 8 N -1.10 -17.96 5.86 -187.49 -1.10 -19.06 16 9 S 2.73 66.52 5.74 -56.49 -0.32 66.19 16 10 O -0.99 -29.59 17.28 -128.00 -2.21 -31.80 16 11 O -0.98 -27.91 16.75 -128.00 -2.14 -30.05 16 12 C -0.70 -19.99 5.95 22.27 0.13 -19.86 16 13 C -0.02 -0.55 9.52 22.27 0.21 -0.34 16 14 C -0.15 -5.50 9.70 22.27 0.22 -5.29 16 15 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 16 C 0.05 2.44 5.10 29.10 0.15 2.59 16 17 C -0.53 -29.51 9.09 25.60 0.23 -29.28 16 18 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 19 C 0.01 0.53 5.46 84.65 0.46 1.00 16 20 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 21 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C -0.16 -5.78 9.70 22.27 0.22 -5.56 16 26 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.71 7.82 -2.39 -0.02 0.69 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.39 2.86 9.05 -74.06 -0.67 2.19 16 35 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.09 1.08 7.75 -2.39 -0.02 1.06 16 37 H 0.43 5.85 8.65 -96.74 -0.84 5.02 16 38 H 0.16 3.69 7.61 -2.91 -0.02 3.66 16 39 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.01 0.78 8.09 -2.39 -0.02 0.76 16 41 H 0.01 0.67 8.09 -2.38 -0.02 0.65 16 42 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 43 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 44 H 0.15 3.95 7.62 -2.91 -0.02 3.92 16 Total: -1.00 -71.60 383.19 -2.49 -74.09 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -0.50 Total: 15.51 kcal Atomic # 6 Polarization: -61.03 SS G_CDS: 3.37 Total: -57.65 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -0.81 Total: -72.68 kcal Atomic # 8 Polarization: -64.65 SS G_CDS: -6.25 Total: -70.90 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 66.52 SS G_CDS: -0.32 Total: 66.19 kcal Total: -71.60 -2.49 -74.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.101 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds