Wall clock time and date at job start Tue Mar 31 2020 15:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 O 1.42905 * 109.46848 * 294.99674 * 4 3 2 7 7 C 1.53002 * 109.46776 * 174.99999 * 4 3 2 8 8 N 1.46506 * 109.46916 * 184.99371 * 7 4 3 9 9 S 1.65593 * 119.99721 * 164.99844 * 8 7 4 10 10 O 1.42100 * 106.40204 * 178.54564 * 9 8 7 11 11 O 1.42106 * 106.40792 * 311.46551 * 9 8 7 12 12 C 1.76199 * 107.21946 * 65.00363 * 9 8 7 13 13 C 1.38229 * 120.00453 * 269.72452 * 12 9 8 14 14 C 1.38228 * 120.00408 * 179.76535 * 13 12 9 15 15 C 1.38236 * 119.99680 * 0.48476 * 14 13 12 16 16 C 1.50701 * 119.99688 * 179.76815 * 15 14 13 17 17 C 1.50704 * 109.47311 * 270.02206 * 16 15 14 18 18 H 1.07998 * 119.99501 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99976 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00070 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99820 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47290 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47283 * 120.00066 * 21 19 17 24 24 H 1.48510 * 109.46847 * 239.99794 * 21 19 17 25 25 C 1.38228 * 120.00027 * 359.79409 * 15 14 13 26 26 C 1.38236 * 120.00224 * 359.95044 * 25 15 14 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 0.96702 * 113.99974 * 300.00156 * 6 4 3 35 35 H 1.08993 * 109.47416 * 304.99509 * 7 4 3 36 36 H 1.09001 * 109.46966 * 65.00241 * 7 4 3 37 37 H 0.96996 * 119.99760 * 345.00760 * 8 7 4 38 38 H 1.08012 * 119.99515 * 359.97438 * 13 12 9 39 39 H 1.08001 * 120.00454 * 180.25340 * 14 13 12 40 40 H 1.09005 * 109.47612 * 30.02693 * 16 15 14 41 41 H 1.09000 * 109.46966 * 150.02649 * 16 15 14 42 42 H 0.96996 * 119.99680 * 180.02562 * 20 19 17 43 43 H 1.08007 * 119.99728 * 179.97438 * 25 15 14 44 44 H 1.08000 * 120.00107 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 8 4.0468 0.8728 1.2202 7 6 4.0800 2.8794 -0.1264 8 7 5.5400 2.8706 -0.2469 9 16 6.3362 4.2271 -0.7648 10 8 7.7218 3.9128 -0.7410 11 8 5.6593 4.6680 -1.9339 12 6 6.0880 5.4749 0.4542 13 6 5.0060 6.3297 0.3580 14 6 4.8086 7.3055 1.3170 15 6 5.6989 7.4329 2.3668 16 6 5.4866 8.5001 3.4094 17 6 6.1930 9.7626 2.9872 18 1 6.7405 9.7895 2.0567 19 6 6.1402 10.8831 3.7888 20 7 5.4738 10.8501 4.9222 21 14 7.0153 12.4482 3.2651 22 1 7.6882 12.2261 1.9600 23 1 6.0260 13.5476 3.1317 24 1 8.0279 12.8149 4.2876 25 6 6.7841 6.5818 2.4598 26 6 6.9786 5.6026 1.5037 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.7617 1.3471 2.0132 35 1 3.6451 3.3431 -1.0117 36 1 3.7920 3.4459 0.7592 37 1 6.0403 2.0702 -0.0235 38 1 4.3129 6.2330 -0.4647 39 1 3.9609 7.9707 1.2440 40 1 4.4199 8.6984 3.5145 41 1 5.8888 8.1606 4.3639 42 1 5.4365 11.6385 5.4859 43 1 7.4799 6.6817 3.2799 44 1 7.8267 4.9379 1.5762 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885027468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:50 Heat of formation + Delta-G solvation = -131.340742 kcal Electronic energy + Delta-G solvation = -25288.115636 eV Core-core repulsion = 21524.196748 eV Total energy + Delta-G solvation = -3763.918887 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.85523 -38.73956 -37.14597 -35.78260 -34.82784 -34.43007 -33.70221 -31.58396 -30.60911 -29.94344 -27.45752 -26.05980 -23.75638 -22.51955 -22.25759 -21.64917 -20.91680 -19.40761 -17.87799 -17.55049 -16.90307 -16.65879 -16.46782 -15.81556 -15.18127 -15.08054 -14.78519 -14.52237 -14.39138 -14.28962 -13.83228 -13.68676 -13.28310 -13.13781 -12.85191 -12.39202 -12.25896 -12.23747 -12.04285 -11.98151 -11.95063 -11.72490 -11.67343 -11.51630 -11.17733 -11.02865 -10.96879 -10.95137 -10.54736 -10.51847 -10.28188 -9.84070 -9.71247 -9.58780 -8.62391 -8.56580 -8.41566 -6.19668 -4.24610 0.48644 1.29602 1.76129 3.02665 3.21553 3.29719 3.35017 3.74470 3.97888 4.08766 4.18065 4.35446 4.48288 4.52138 4.59121 4.78248 4.84134 5.11464 5.14107 5.15758 5.18788 5.20819 5.22577 5.42841 5.44036 5.60482 5.62746 5.69183 5.73860 5.81370 5.88113 5.88957 5.96038 6.21699 6.29929 6.47655 6.80307 6.81834 6.88024 7.26254 7.27778 7.39976 7.55852 7.75719 8.10626 8.80493 9.40588 10.90408 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.002718 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.308226 B =10298.942378 C =11352.972045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.154 4.154 4 C 0.102 3.898 5 H 0.107 0.893 6 O -0.558 6.558 7 C 0.083 3.917 8 N -1.115 6.115 9 S 2.699 3.301 10 O -0.965 6.965 11 O -0.966 6.966 12 C -0.704 4.704 13 C -0.026 4.026 14 C -0.146 4.146 15 C 0.027 3.973 16 C 0.039 3.961 17 C -0.517 4.517 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.146 4.146 26 C -0.021 4.021 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.378 0.622 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.420 0.580 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 -20.512 -8.162 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.192 4.192 4 C 0.041 3.959 5 H 0.125 0.875 6 O -0.363 6.363 7 C -0.044 4.044 8 N -0.875 5.875 9 S 2.791 3.209 10 O -0.956 6.956 11 O -0.956 6.956 12 C -0.794 4.794 13 C -0.046 4.046 14 C -0.165 4.165 15 C 0.026 3.974 16 C 0.002 3.998 17 C -0.555 4.555 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.165 4.165 26 C -0.040 4.040 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.225 0.775 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.255 0.745 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.147 0.853 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.864 -20.592 -9.258 23.598 hybrid contribution 0.104 1.493 0.970 1.784 sum -6.760 -19.099 -8.288 21.889 Atomic orbital electron populations 1.21791 0.95855 1.01653 1.01863 1.21445 0.95636 0.96077 1.02624 1.22318 0.95101 0.98270 1.03539 1.22158 0.92953 0.92438 0.88358 0.87524 1.86582 1.77057 1.57055 1.15640 1.22054 0.80024 0.99163 1.03134 1.55475 1.15185 1.30176 1.86676 1.01543 0.72727 0.72707 0.73912 1.93570 1.30951 1.83855 1.87190 1.93554 1.75634 1.81455 1.44935 1.30319 1.07823 1.21658 1.19568 1.20778 0.94076 0.92859 0.96842 1.21242 1.01159 0.98936 0.95127 1.21122 0.90204 0.91639 0.94404 1.18546 0.98578 0.90754 0.91897 1.21006 1.32777 0.95117 1.06580 0.92234 1.25008 0.95318 0.99041 0.94816 1.69955 1.41300 1.29873 1.11849 0.86425 0.79450 0.82731 0.78824 1.19562 1.20783 1.20784 1.21258 0.98919 0.96210 1.00085 1.20781 0.95539 0.96446 0.91270 0.92772 0.92701 0.92754 0.92038 0.91282 0.91018 0.90480 0.77469 0.89295 0.91050 0.74488 0.85319 0.85354 0.94721 0.94710 0.92669 0.85327 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.15 0.37 -0.48 16 2 C -0.12 -0.70 5.83 -26.74 -0.16 -0.86 16 3 C -0.15 -0.86 4.89 -26.73 -0.13 -0.99 16 4 C 0.10 0.67 3.06 -26.73 -0.08 0.59 16 5 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 6 O -0.56 -4.07 12.68 -35.23 -0.45 -4.52 16 7 C 0.08 0.66 5.86 -4.04 -0.02 0.64 16 8 N -1.12 -10.74 5.96 -10.61 -0.06 -10.80 16 9 S 2.70 36.45 5.74 -107.50 -0.62 35.83 16 10 O -0.97 -15.55 17.28 -57.17 -0.99 -16.54 16 11 O -0.97 -15.16 16.75 -57.17 -0.96 -16.12 16 12 C -0.70 -10.79 5.95 -39.59 -0.24 -11.02 16 13 C -0.03 -0.41 9.52 -39.59 -0.38 -0.79 16 14 C -0.15 -2.63 9.70 -39.59 -0.38 -3.01 16 15 C 0.03 0.54 5.07 -104.63 -0.53 0.01 16 16 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 17 C -0.52 -13.91 9.09 -34.44 -0.31 -14.23 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 21 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.15 -2.67 9.70 -39.59 -0.38 -3.06 16 26 C -0.02 -0.34 9.52 -39.58 -0.38 -0.71 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.45 7.82 -51.93 -0.41 0.04 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.38 1.80 9.05 45.56 0.41 2.21 16 35 H 0.09 0.69 7.75 -51.93 -0.40 0.29 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.42 3.54 8.51 -34.47 -0.29 3.25 16 38 H 0.13 1.70 7.61 -52.48 -0.40 1.30 16 39 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 40 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 41 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.13 2.25 8.06 -52.48 -0.42 1.82 16 44 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -33.36 383.06 -10.55 -43.91 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.10 Total: 2.64 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: -2.87 Total: -31.56 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.67 Total: -35.42 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -2.39 Total: -37.18 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 36.45 SS G_CDS: -0.62 Total: 35.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.36 -10.55 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.429 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds