Wall clock time and date at job start Tue Mar 31 2020 15:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 O 1.42905 * 109.46848 * 294.99674 * 4 3 2 7 7 C 1.53002 * 109.46776 * 174.99999 * 4 3 2 8 8 N 1.46506 * 109.46916 * 184.99371 * 7 4 3 9 9 S 1.65593 * 119.99721 * 164.99844 * 8 7 4 10 10 O 1.42100 * 106.40204 * 178.54564 * 9 8 7 11 11 O 1.42106 * 106.40792 * 311.46551 * 9 8 7 12 12 C 1.76199 * 107.21946 * 65.00363 * 9 8 7 13 13 C 1.38229 * 120.00453 * 269.72452 * 12 9 8 14 14 C 1.38228 * 120.00408 * 179.76535 * 13 12 9 15 15 C 1.38236 * 119.99680 * 0.48476 * 14 13 12 16 16 C 1.50701 * 119.99688 * 179.76815 * 15 14 13 17 17 C 1.50704 * 109.47311 * 270.02206 * 16 15 14 18 18 H 1.07998 * 119.99501 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99976 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00070 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99820 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47290 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47283 * 120.00066 * 21 19 17 24 24 H 1.48510 * 109.46847 * 239.99794 * 21 19 17 25 25 C 1.38228 * 120.00027 * 359.79409 * 15 14 13 26 26 C 1.38236 * 120.00224 * 359.95044 * 25 15 14 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 0.96702 * 113.99974 * 300.00156 * 6 4 3 35 35 H 1.08993 * 109.47416 * 304.99509 * 7 4 3 36 36 H 1.09001 * 109.46966 * 65.00241 * 7 4 3 37 37 H 0.96996 * 119.99760 * 345.00760 * 8 7 4 38 38 H 1.08012 * 119.99515 * 359.97438 * 13 12 9 39 39 H 1.08001 * 120.00454 * 180.25340 * 14 13 12 40 40 H 1.09005 * 109.47612 * 30.02693 * 16 15 14 41 41 H 1.09000 * 109.46966 * 150.02649 * 16 15 14 42 42 H 0.96996 * 119.99680 * 180.02562 * 20 19 17 43 43 H 1.08007 * 119.99728 * 179.97438 * 25 15 14 44 44 H 1.08000 * 120.00107 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 8 4.0468 0.8728 1.2202 7 6 4.0800 2.8794 -0.1264 8 7 5.5400 2.8706 -0.2469 9 16 6.3362 4.2271 -0.7648 10 8 7.7218 3.9128 -0.7410 11 8 5.6593 4.6680 -1.9339 12 6 6.0880 5.4749 0.4542 13 6 5.0060 6.3297 0.3580 14 6 4.8086 7.3055 1.3170 15 6 5.6989 7.4329 2.3668 16 6 5.4866 8.5001 3.4094 17 6 6.1930 9.7626 2.9872 18 1 6.7405 9.7895 2.0567 19 6 6.1402 10.8831 3.7888 20 7 5.4738 10.8501 4.9222 21 14 7.0153 12.4482 3.2651 22 1 7.6882 12.2261 1.9600 23 1 6.0260 13.5476 3.1317 24 1 8.0279 12.8149 4.2876 25 6 6.7841 6.5818 2.4598 26 6 6.9786 5.6026 1.5037 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.7617 1.3471 2.0132 35 1 3.6451 3.3431 -1.0117 36 1 3.7920 3.4459 0.7592 37 1 6.0403 2.0702 -0.0235 38 1 4.3129 6.2330 -0.4647 39 1 3.9609 7.9707 1.2440 40 1 4.4199 8.6984 3.5145 41 1 5.8888 8.1606 4.3639 42 1 5.4365 11.6385 5.4859 43 1 7.4799 6.6817 3.2799 44 1 7.8267 4.9379 1.5762 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885027468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:49 Heat of formation + Delta-G solvation = -155.479990 kcal Electronic energy + Delta-G solvation = -25289.162392 eV Core-core repulsion = 21524.196748 eV Total energy + Delta-G solvation = -3764.965644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23623 -39.30868 -38.32629 -36.97565 -35.62456 -35.50128 -34.93124 -33.31958 -31.96041 -30.49774 -29.24882 -26.63118 -25.59850 -23.74796 -22.93935 -22.47771 -22.09594 -20.47150 -19.00120 -18.61282 -18.48404 -17.72602 -17.22712 -16.84331 -16.74246 -16.11540 -15.98159 -15.53915 -15.40627 -15.14434 -15.01711 -14.64664 -14.44851 -14.15990 -13.96936 -13.86068 -13.41638 -13.38053 -13.25901 -13.21597 -13.15563 -12.69855 -12.69331 -12.64980 -12.57741 -12.15000 -12.14821 -12.03891 -11.66155 -11.64684 -11.46804 -11.44015 -10.83539 -10.66496 -10.49066 -9.96307 -9.94983 -8.28072 -6.40508 -0.62238 -0.06577 0.39817 1.36534 1.38289 1.50744 2.01583 2.34177 2.56689 2.82710 3.04713 3.29850 3.51663 3.71497 3.88408 3.96478 3.98854 4.13012 4.16033 4.28040 4.34096 4.46411 4.48182 4.57287 4.68421 4.71424 4.81542 4.90682 4.91633 5.00479 5.07384 5.11188 5.14304 5.24862 5.25991 5.31514 5.33537 5.44243 5.52655 5.66697 5.86356 5.92332 6.08077 6.09465 6.71607 6.87364 7.28668 8.82162 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.002718 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.308226 B =10298.942378 C =11352.972045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.151 4.151 4 C 0.108 3.892 5 H 0.107 0.893 6 O -0.571 6.571 7 C 0.073 3.927 8 N -1.100 6.100 9 S 2.727 3.273 10 O -0.989 6.989 11 O -0.982 6.982 12 C -0.700 4.700 13 C -0.019 4.019 14 C -0.154 4.154 15 C -0.003 4.003 16 C 0.048 3.952 17 C -0.532 4.532 18 H 0.053 0.947 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.276 1.276 25 C -0.156 4.156 26 C -0.019 4.019 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.388 0.612 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.428 0.572 38 H 0.158 0.842 39 H 0.131 0.869 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.267 0.733 43 H 0.128 0.872 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 -21.522 -9.695 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.189 4.189 4 C 0.048 3.952 5 H 0.125 0.875 6 O -0.378 6.378 7 C -0.053 4.053 8 N -0.863 5.863 9 S 2.817 3.183 10 O -0.979 6.979 11 O -0.972 6.972 12 C -0.787 4.787 13 C -0.038 4.038 14 C -0.172 4.172 15 C -0.003 4.003 16 C 0.011 3.989 17 C -0.570 4.570 18 H 0.071 0.929 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.175 4.175 26 C -0.038 4.038 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.237 0.763 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.266 0.734 38 H 0.176 0.824 39 H 0.149 0.851 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.944 -21.591 -10.771 25.108 hybrid contribution 0.083 1.658 1.410 2.178 sum -6.861 -19.933 -9.361 23.066 Atomic orbital electron populations 1.21791 0.95611 1.01801 1.01966 1.21425 0.95832 0.96207 1.02234 1.22294 0.94262 0.98176 1.04172 1.22104 0.93468 0.91425 0.88235 0.87538 1.86562 1.77345 1.57573 1.16318 1.22338 0.78599 1.00401 1.03974 1.55135 1.16026 1.28877 1.86291 1.00717 0.71985 0.72545 0.73055 1.93538 1.32847 1.84142 1.87350 1.93535 1.75905 1.82161 1.45614 1.30775 1.06876 1.21843 1.19187 1.21051 0.94496 0.91576 0.96663 1.21311 1.00932 0.99843 0.95149 1.20818 0.92489 0.92171 0.94865 1.18268 0.96755 0.91494 0.92371 1.21315 1.32800 0.96575 1.06311 0.92881 1.25856 0.96012 1.02297 0.94807 1.70057 1.42559 1.30937 1.12892 0.85418 0.78451 0.78842 0.78490 1.19252 1.19988 1.20114 1.21301 0.98501 0.96727 1.00986 1.21007 0.96284 0.95853 0.90658 0.92665 0.92713 0.92515 0.92116 0.92000 0.90445 0.89822 0.76265 0.88655 0.90090 0.73413 0.82399 0.85087 0.96687 0.96913 0.92375 0.85418 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.75 16 2 C -0.12 -1.20 5.83 30.59 0.18 -1.02 16 3 C -0.15 -1.35 4.89 30.59 0.15 -1.20 16 4 C 0.11 1.17 3.06 30.60 0.09 1.27 16 5 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 6 O -0.57 -7.09 12.68 -148.98 -1.89 -8.98 16 7 C 0.07 0.95 5.86 86.38 0.51 1.45 16 8 N -1.10 -18.12 5.96 -187.48 -1.12 -19.24 16 9 S 2.73 66.63 5.74 -56.49 -0.32 66.31 16 10 O -0.99 -29.55 17.28 -128.00 -2.21 -31.76 16 11 O -0.98 -28.11 16.75 -128.00 -2.14 -30.25 16 12 C -0.70 -19.92 5.95 22.27 0.13 -19.79 16 13 C -0.02 -0.55 9.52 22.27 0.21 -0.34 16 14 C -0.15 -5.48 9.70 22.27 0.22 -5.26 16 15 C 0.00 -0.13 5.07 -19.87 -0.10 -0.23 16 16 C 0.05 2.43 5.10 29.10 0.15 2.57 16 17 C -0.53 -29.40 9.09 25.60 0.23 -29.17 16 18 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 19 C 0.01 0.51 5.46 84.65 0.46 0.98 16 20 N -0.92 -53.79 13.29 21.45 0.28 -53.51 16 21 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 C -0.16 -5.75 9.70 22.27 0.22 -5.53 16 26 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.71 7.82 -2.39 -0.02 0.70 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.39 2.88 9.05 -74.06 -0.67 2.21 16 35 H 0.10 1.17 7.75 -2.39 -0.02 1.15 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.43 6.03 8.51 -96.75 -0.82 5.21 16 38 H 0.16 3.68 7.61 -2.90 -0.02 3.66 16 39 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.01 0.79 8.09 -2.38 -0.02 0.77 16 41 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 42 H 0.27 14.55 8.31 -92.71 -0.77 13.77 16 43 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.15 3.95 7.62 -2.91 -0.02 3.93 16 Total: -1.00 -71.31 383.06 -2.49 -73.80 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -0.49 Total: 15.58 kcal Atomic # 6 Polarization: -60.77 SS G_CDS: 3.37 Total: -57.39 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -0.83 Total: -72.75 kcal Atomic # 8 Polarization: -64.75 SS G_CDS: -6.24 Total: -70.99 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 66.63 SS G_CDS: -0.32 Total: 66.31 kcal Total: -71.31 -2.49 -73.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.683 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds