Wall clock time and date at job start Tue Mar 31 2020 15:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46892 * 2 1 4 4 H 1.08994 * 109.46955 * 304.44228 * 3 2 1 5 5 C 1.52992 * 109.47298 * 64.45118 * 3 2 1 6 6 C 1.52996 * 109.47230 * 184.99880 * 5 3 2 7 7 O 1.42902 * 109.47377 * 179.97438 * 6 5 3 8 8 N 1.46501 * 109.46631 * 184.44986 * 3 2 1 9 9 S 1.65594 * 120.00378 * 95.80083 * 8 3 2 10 10 O 1.42109 * 106.40007 * 311.96177 * 9 8 3 11 11 O 1.42098 * 106.40599 * 179.04587 * 9 8 3 12 12 C 1.76204 * 107.21857 * 65.50119 * 9 8 3 13 13 C 1.38235 * 119.99698 * 90.00422 * 12 9 8 14 14 C 1.38238 * 119.99562 * 179.72421 * 13 12 9 15 15 C 1.38236 * 120.00105 * 0.27967 * 14 13 12 16 16 C 1.50700 * 119.99863 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47379 * 89.99779 * 16 15 14 18 18 H 1.08004 * 119.99459 * 359.97438 * 17 16 15 19 19 C 1.37870 * 119.99856 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47170 * 89.99621 * 21 19 17 23 23 H 1.48495 * 109.46938 * 209.99453 * 21 19 17 24 24 H 1.48493 * 109.47005 * 329.99566 * 21 19 17 25 25 C 1.38233 * 119.99854 * 359.95167 * 15 14 13 26 26 C 1.38233 * 120.00314 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47389 * 293.83819 * 1 2 3 28 28 H 1.09007 * 109.47040 * 53.83645 * 1 2 3 29 29 H 1.09002 * 109.47348 * 173.82947 * 1 2 3 30 30 H 1.09001 * 109.47161 * 239.99954 * 2 1 3 31 31 H 1.08992 * 109.47022 * 119.99928 * 2 1 3 32 32 H 1.09007 * 109.47008 * 304.99453 * 5 3 2 33 33 H 1.08998 * 109.47300 * 64.99232 * 5 3 2 34 34 H 1.08994 * 109.46930 * 299.99576 * 6 5 3 35 35 H 1.09006 * 109.47314 * 59.99716 * 6 5 3 36 36 H 0.96695 * 114.00622 * 179.97438 * 7 6 5 37 37 H 0.97002 * 119.99715 * 275.79831 * 8 3 2 38 38 H 1.07996 * 119.99944 * 359.97438 * 13 12 9 39 39 H 1.07997 * 119.99404 * 180.25408 * 14 13 12 40 40 H 1.08997 * 109.46695 * 209.99746 * 16 15 14 41 41 H 1.08995 * 109.46822 * 329.99964 * 16 15 14 42 42 H 0.97005 * 120.00161 * 180.02562 * 20 19 17 43 43 H 1.07999 * 119.99873 * 180.02562 * 25 15 14 44 44 H 1.08005 * 120.00192 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6131 1.9788 -0.8475 5 6 1.6234 2.1308 1.3014 6 6 2.0240 3.6064 1.2488 7 8 1.6344 4.2494 2.4641 8 7 3.5011 1.4439 -0.1072 9 16 4.2227 1.6264 -1.5864 10 8 3.5686 0.7222 -2.4662 11 8 5.6244 1.6078 -1.3541 12 6 3.8347 3.2468 -2.1596 13 6 4.6672 4.3065 -1.8518 14 6 4.3658 5.5768 -2.3064 15 6 3.2289 5.7882 -3.0638 16 6 2.9000 7.1731 -3.5588 17 6 3.5341 7.3877 -4.9090 18 1 4.1173 6.6001 -5.3630 19 6 3.3706 8.5898 -5.5641 20 7 2.6610 9.5489 -5.0110 21 14 4.1560 8.8556 -7.2381 22 1 3.2103 8.4311 -8.3016 23 1 4.4805 10.2944 -7.4097 24 1 5.4013 8.0524 -7.3337 25 6 2.3939 4.7292 -3.3675 26 6 2.6955 3.4589 -2.9134 27 1 -0.3634 0.4153 0.9400 28 1 -0.3633 0.6065 -0.8297 29 1 -0.3634 -1.0217 -0.1105 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.5432 2.0517 1.4246 33 1 2.1213 1.6488 2.1427 34 1 3.1041 3.6855 1.1256 35 1 1.5260 4.0884 0.4074 36 1 1.8580 5.1894 2.5010 37 1 4.0458 1.3379 0.6884 38 1 5.5551 4.1414 -1.2597 39 1 5.0184 6.4040 -2.0694 40 1 1.8188 7.2812 -3.6438 41 1 3.2849 7.9113 -2.8552 42 1 2.5456 10.3945 -5.4721 43 1 1.5059 4.8943 -3.9596 44 1 2.0433 2.6315 -3.1510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885028652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:25 Heat of formation + Delta-G solvation = -126.884946 kcal Electronic energy + Delta-G solvation = -26246.040549 eV Core-core repulsion = 22482.314880 eV Total energy + Delta-G solvation = -3763.725669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.90182 -38.37624 -37.15103 -36.37031 -35.79181 -33.73016 -32.45231 -31.61293 -30.64949 -30.54476 -27.48436 -25.60379 -23.77825 -22.75090 -22.43610 -21.04381 -20.90696 -19.59945 -17.99818 -17.57734 -17.23490 -16.49545 -16.41839 -15.49104 -15.17759 -15.09491 -14.95422 -14.47714 -14.41623 -14.18440 -13.87730 -13.26588 -13.19701 -13.11324 -12.88715 -12.50293 -12.28857 -12.06006 -11.96773 -11.85775 -11.79373 -11.75238 -11.53889 -11.53436 -11.31409 -10.98427 -10.95896 -10.81491 -10.55616 -10.53509 -10.12892 -9.84540 -9.74526 -9.59523 -8.65968 -8.57776 -8.44859 -6.20922 -4.26163 0.45684 1.25638 1.72041 3.00526 3.21869 3.28647 3.32871 3.70805 3.87756 4.05348 4.33983 4.40007 4.59933 4.62061 4.79796 4.97789 5.01378 5.11868 5.15306 5.17039 5.18204 5.25238 5.36508 5.47217 5.57266 5.65869 5.74049 5.74805 5.81864 5.84601 5.88212 6.00911 6.12824 6.17987 6.26032 6.44113 6.76749 6.78677 6.84932 7.23395 7.36750 7.43339 7.53197 7.74015 8.08779 8.78602 9.39210 10.89055 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.003352 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.189780 B = 8351.106134 C = 9032.399368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.157 3.843 4 H 0.089 0.911 5 C -0.125 4.125 6 C 0.071 3.929 7 O -0.578 6.578 8 N -1.117 6.117 9 S 2.694 3.306 10 O -0.961 6.961 11 O -0.966 6.966 12 C -0.704 4.704 13 C -0.022 4.022 14 C -0.145 4.145 15 C 0.027 3.973 16 C 0.039 3.961 17 C -0.519 4.519 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.144 4.144 26 C -0.026 4.026 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.382 0.618 37 H 0.416 0.584 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.264 0.736 43 H 0.129 0.871 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -15.053 13.626 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.181 4.181 3 C 0.050 3.950 4 H 0.107 0.893 5 C -0.164 4.164 6 C -0.007 4.007 7 O -0.384 6.384 8 N -0.875 5.875 9 S 2.787 3.213 10 O -0.951 6.951 11 O -0.957 6.957 12 C -0.794 4.794 13 C -0.042 4.042 14 C -0.164 4.164 15 C 0.027 3.973 16 C 0.003 3.997 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.163 4.163 26 C -0.046 4.046 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.229 0.771 37 H 0.251 0.749 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.790 -16.091 13.139 20.961 hybrid contribution 0.588 1.600 -0.826 1.894 sum -2.202 -14.491 12.314 19.143 Atomic orbital electron populations 1.21816 0.95020 1.02205 1.02170 1.22043 0.96447 0.95933 1.03644 1.20791 0.78707 0.96648 0.98853 0.89301 1.21855 1.03063 0.94137 0.97343 1.22215 0.98876 0.93063 0.86502 1.86396 1.84914 1.27775 1.39288 1.55758 1.14675 1.90235 1.26823 1.01700 0.72823 0.74269 0.72518 1.93566 1.76386 1.61388 1.63789 1.93569 1.29619 1.87501 1.84988 1.30337 1.07875 1.22111 1.19049 1.20768 0.96120 0.91998 0.95285 1.21251 0.98215 0.96714 1.00220 1.21126 0.90666 0.98481 0.87047 1.18540 0.98212 0.86301 0.96686 1.20964 1.32923 0.99791 1.01977 0.92284 1.24995 0.95105 0.95783 0.98196 1.69939 1.39414 1.05056 1.38530 0.86479 0.79804 0.77452 0.83687 1.20417 1.21011 1.19687 1.21249 1.01364 0.92117 1.01602 1.20795 0.93481 0.97606 0.92694 0.92348 0.92224 0.92314 0.90054 0.91295 0.89504 0.90501 0.93232 0.93199 0.77076 0.74928 0.85302 0.85358 0.94720 0.94735 0.92597 0.85327 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.50 37.16 0.35 -0.74 16 2 C -0.14 -1.15 5.73 -26.73 -0.15 -1.30 16 3 C 0.16 1.36 2.25 -67.93 -0.15 1.21 16 4 H 0.09 0.80 7.27 -51.93 -0.38 0.42 16 5 C -0.13 -1.02 5.05 -26.74 -0.13 -1.16 16 6 C 0.07 0.68 6.93 37.16 0.26 0.93 16 7 O -0.58 -5.79 13.66 -35.23 -0.48 -6.28 16 8 N -1.12 -10.38 4.92 -4.89 -0.02 -10.40 16 9 S 2.69 35.56 5.64 -107.50 -0.61 34.95 16 10 O -0.96 -14.75 16.58 -57.17 -0.95 -15.70 16 11 O -0.97 -15.17 17.28 -57.17 -0.99 -16.16 16 12 C -0.70 -10.43 5.85 -39.58 -0.23 -10.66 16 13 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 14 C -0.15 -2.57 9.70 -39.58 -0.38 -2.95 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 17 C -0.52 -13.82 9.09 -34.44 -0.31 -14.14 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.06 1.67 5.46 -17.83 -0.10 1.57 16 20 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 21 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.14 -2.54 9.70 -39.59 -0.38 -2.93 16 26 C -0.03 -0.40 8.92 -39.58 -0.35 -0.75 16 27 H 0.06 0.37 6.75 -51.93 -0.35 0.02 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.78 7.68 -51.93 -0.40 0.38 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.68 6.46 -51.92 -0.34 0.34 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.46 7.75 -51.93 -0.40 0.05 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.38 2.52 9.12 45.56 0.42 2.93 16 37 H 0.42 3.00 8.85 -34.46 -0.30 2.69 16 38 H 0.13 1.72 7.62 -52.49 -0.40 1.32 16 39 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.13 1.68 7.62 -52.48 -0.40 1.28 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -33.15 378.29 -10.18 -43.33 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.89 Total: 3.96 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -2.65 Total: -30.84 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.71 Total: -34.82 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -2.42 Total: -38.14 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 35.56 SS G_CDS: -0.61 Total: 34.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.15 -10.18 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885028652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.559 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds