Wall clock time and date at job start Tue Mar 31 2020 15:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46892 * 2 1 4 4 H 1.08994 * 109.46955 * 304.44228 * 3 2 1 5 5 C 1.52992 * 109.47298 * 64.45118 * 3 2 1 6 6 C 1.52996 * 109.47230 * 184.99880 * 5 3 2 7 7 O 1.42902 * 109.47377 * 179.97438 * 6 5 3 8 8 N 1.46501 * 109.46631 * 184.44986 * 3 2 1 9 9 S 1.65594 * 120.00378 * 95.80083 * 8 3 2 10 10 O 1.42109 * 106.40007 * 311.96177 * 9 8 3 11 11 O 1.42098 * 106.40599 * 179.04587 * 9 8 3 12 12 C 1.76204 * 107.21857 * 65.50119 * 9 8 3 13 13 C 1.38235 * 119.99698 * 90.00422 * 12 9 8 14 14 C 1.38238 * 119.99562 * 179.72421 * 13 12 9 15 15 C 1.38236 * 120.00105 * 0.27967 * 14 13 12 16 16 C 1.50700 * 119.99863 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47379 * 89.99779 * 16 15 14 18 18 H 1.08004 * 119.99459 * 359.97438 * 17 16 15 19 19 C 1.37870 * 119.99856 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47170 * 89.99621 * 21 19 17 23 23 H 1.48495 * 109.46938 * 209.99453 * 21 19 17 24 24 H 1.48493 * 109.47005 * 329.99566 * 21 19 17 25 25 C 1.38233 * 119.99854 * 359.95167 * 15 14 13 26 26 C 1.38233 * 120.00314 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47389 * 293.83819 * 1 2 3 28 28 H 1.09007 * 109.47040 * 53.83645 * 1 2 3 29 29 H 1.09002 * 109.47348 * 173.82947 * 1 2 3 30 30 H 1.09001 * 109.47161 * 239.99954 * 2 1 3 31 31 H 1.08992 * 109.47022 * 119.99928 * 2 1 3 32 32 H 1.09007 * 109.47008 * 304.99453 * 5 3 2 33 33 H 1.08998 * 109.47300 * 64.99232 * 5 3 2 34 34 H 1.08994 * 109.46930 * 299.99576 * 6 5 3 35 35 H 1.09006 * 109.47314 * 59.99716 * 6 5 3 36 36 H 0.96695 * 114.00622 * 179.97438 * 7 6 5 37 37 H 0.97002 * 119.99715 * 275.79831 * 8 3 2 38 38 H 1.07996 * 119.99944 * 359.97438 * 13 12 9 39 39 H 1.07997 * 119.99404 * 180.25408 * 14 13 12 40 40 H 1.08997 * 109.46695 * 209.99746 * 16 15 14 41 41 H 1.08995 * 109.46822 * 329.99964 * 16 15 14 42 42 H 0.97005 * 120.00161 * 180.02562 * 20 19 17 43 43 H 1.07999 * 119.99873 * 180.02562 * 25 15 14 44 44 H 1.08005 * 120.00192 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6131 1.9788 -0.8475 5 6 1.6234 2.1308 1.3014 6 6 2.0240 3.6064 1.2488 7 8 1.6344 4.2494 2.4641 8 7 3.5011 1.4439 -0.1072 9 16 4.2227 1.6264 -1.5864 10 8 3.5686 0.7222 -2.4662 11 8 5.6244 1.6078 -1.3541 12 6 3.8347 3.2468 -2.1596 13 6 4.6672 4.3065 -1.8518 14 6 4.3658 5.5768 -2.3064 15 6 3.2289 5.7882 -3.0638 16 6 2.9000 7.1731 -3.5588 17 6 3.5341 7.3877 -4.9090 18 1 4.1173 6.6001 -5.3630 19 6 3.3706 8.5898 -5.5641 20 7 2.6610 9.5489 -5.0110 21 14 4.1560 8.8556 -7.2381 22 1 3.2103 8.4311 -8.3016 23 1 4.4805 10.2944 -7.4097 24 1 5.4013 8.0524 -7.3337 25 6 2.3939 4.7292 -3.3675 26 6 2.6955 3.4589 -2.9134 27 1 -0.3634 0.4153 0.9400 28 1 -0.3633 0.6065 -0.8297 29 1 -0.3634 -1.0217 -0.1105 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.5432 2.0517 1.4246 33 1 2.1213 1.6488 2.1427 34 1 3.1041 3.6855 1.1256 35 1 1.5260 4.0884 0.4074 36 1 1.8580 5.1894 2.5010 37 1 4.0458 1.3379 0.6884 38 1 5.5551 4.1414 -1.2597 39 1 5.0184 6.4040 -2.0694 40 1 1.8188 7.2812 -3.6438 41 1 3.2849 7.9113 -2.8552 42 1 2.5456 10.3945 -5.4721 43 1 1.5059 4.8943 -3.9596 44 1 2.0433 2.6315 -3.1510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885028652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:24 Heat of formation + Delta-G solvation = -151.133070 kcal Electronic energy + Delta-G solvation = -26247.092027 eV Core-core repulsion = 22482.314880 eV Total energy + Delta-G solvation = -3764.777147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.25732 -39.12875 -38.28519 -37.12536 -36.95722 -35.60388 -33.34076 -33.15091 -31.97154 -31.23956 -29.25320 -26.28216 -25.59988 -23.75409 -23.40850 -22.48715 -21.67916 -20.64918 -19.09106 -18.60696 -18.44841 -18.20738 -17.29696 -16.85866 -16.54410 -15.99348 -15.95834 -15.79161 -15.47658 -15.25875 -14.90642 -14.62978 -14.46377 -14.03902 -13.92156 -13.89199 -13.41530 -13.41271 -13.24813 -13.16088 -13.09986 -12.68995 -12.66551 -12.61484 -12.44924 -12.24587 -12.10292 -12.04283 -11.98548 -11.67798 -11.49683 -11.38664 -10.85487 -10.65951 -10.48479 -9.96735 -9.95642 -8.27823 -6.40404 -0.63679 -0.07614 0.38911 1.37861 1.38494 1.49598 1.99380 2.34177 2.55831 2.81083 3.05130 3.21648 3.31435 3.85768 3.92617 3.94063 3.98153 4.09982 4.15662 4.31511 4.38077 4.47164 4.47654 4.51149 4.58929 4.69381 4.78663 4.81023 4.90525 4.98978 5.09895 5.14471 5.19774 5.24490 5.25883 5.29514 5.32958 5.37473 5.54642 5.66559 5.86112 5.91541 6.09236 6.10145 6.71518 6.83608 7.28906 8.82112 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.003352 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.189780 B = 8351.106134 C = 9032.399368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.141 4.141 3 C 0.153 3.847 4 H 0.087 0.913 5 C -0.119 4.119 6 C 0.066 3.934 7 O -0.592 6.592 8 N -1.100 6.100 9 S 2.720 3.280 10 O -0.978 6.978 11 O -0.987 6.987 12 C -0.700 4.700 13 C -0.018 4.018 14 C -0.153 4.153 15 C -0.001 4.001 16 C 0.048 3.952 17 C -0.534 4.534 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.962 3.038 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.152 4.152 26 C -0.019 4.019 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.394 0.606 37 H 0.430 0.570 38 H 0.154 0.846 39 H 0.128 0.872 40 H 0.014 0.986 41 H 0.013 0.987 42 H 0.267 0.733 43 H 0.129 0.871 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 -17.028 14.287 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.180 4.180 3 C 0.046 3.954 4 H 0.105 0.895 5 C -0.158 4.158 6 C -0.012 4.012 7 O -0.400 6.400 8 N -0.862 5.862 9 S 2.811 3.189 10 O -0.968 6.968 11 O -0.977 6.977 12 C -0.787 4.787 13 C -0.037 4.037 14 C -0.172 4.172 15 C -0.002 4.002 16 C 0.011 3.989 17 C -0.572 4.572 18 H 0.072 0.928 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.787 3.213 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.193 1.193 25 C -0.171 4.171 26 C -0.039 4.039 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.244 0.756 37 H 0.267 0.733 38 H 0.171 0.829 39 H 0.146 0.854 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.147 0.853 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.432 -18.045 13.803 22.849 hybrid contribution 0.450 2.126 -0.917 2.359 sum -1.982 -15.919 12.886 20.576 Atomic orbital electron populations 1.21837 0.94254 1.02651 1.02584 1.22033 0.97129 0.95184 1.03637 1.20948 0.77835 0.97353 0.99227 0.89528 1.21816 1.03574 0.93161 0.97215 1.22289 0.98953 0.93837 0.86079 1.86360 1.85123 1.29031 1.39470 1.55404 1.15226 1.89542 1.26034 1.00933 0.72060 0.73105 0.72838 1.93549 1.76654 1.61402 1.65195 1.93541 1.31234 1.87449 1.85496 1.30772 1.07023 1.23054 1.17840 1.20992 0.96835 0.91022 0.94814 1.21283 0.97652 0.97969 1.00300 1.20802 0.92794 0.96914 0.89672 1.18261 0.96452 0.88708 0.95442 1.21294 1.32824 0.99753 1.03327 0.92849 1.25832 0.95578 0.95559 1.01840 1.70045 1.40672 1.05545 1.40128 0.85486 0.78986 0.77529 0.79331 1.19679 1.20368 1.19283 1.21290 1.01230 0.92640 1.01970 1.21029 0.93872 0.97212 0.91741 0.91380 0.92581 0.91748 0.91485 0.89905 0.88854 0.89445 0.92978 0.94197 0.75647 0.73294 0.82863 0.85361 0.96809 0.96827 0.92384 0.85279 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.50 71.98 0.68 -1.15 16 2 C -0.14 -1.92 5.73 30.60 0.18 -1.75 16 3 C 0.15 2.27 2.25 44.99 0.10 2.37 16 4 H 0.09 1.35 7.27 -2.39 -0.02 1.34 16 5 C -0.12 -1.64 5.05 30.59 0.15 -1.48 16 6 C 0.07 1.14 6.93 71.98 0.50 1.64 16 7 O -0.59 -10.98 13.66 -148.98 -2.03 -13.01 16 8 N -1.10 -17.49 4.92 -169.40 -0.83 -18.32 16 9 S 2.72 65.38 5.64 -56.49 -0.32 65.06 16 10 O -0.98 -27.77 16.58 -128.00 -2.12 -29.89 16 11 O -0.99 -28.59 17.28 -128.00 -2.21 -30.80 16 12 C -0.70 -19.45 5.85 22.27 0.13 -19.32 16 13 C -0.02 -0.52 9.52 22.27 0.21 -0.30 16 14 C -0.15 -5.44 9.70 22.27 0.22 -5.23 16 15 C 0.00 -0.06 5.07 -19.87 -0.10 -0.16 16 16 C 0.05 2.41 5.10 29.10 0.15 2.56 16 17 C -0.53 -29.28 9.09 25.60 0.23 -29.05 16 18 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 19 C 0.01 0.61 5.46 84.65 0.46 1.07 16 20 N -0.92 -53.50 13.29 21.44 0.28 -53.21 16 21 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 C -0.15 -5.39 9.70 22.27 0.22 -5.17 16 26 C -0.02 -0.57 8.92 22.27 0.20 -0.37 16 27 H 0.07 0.67 6.75 -2.39 -0.02 0.66 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.14 7.68 -2.39 -0.02 1.12 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.21 6.46 -2.38 -0.02 1.19 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 0.85 7.75 -2.39 -0.02 0.83 16 35 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.39 4.80 9.12 -74.06 -0.68 4.12 16 37 H 0.43 4.85 8.85 -96.75 -0.86 4.00 16 38 H 0.15 3.74 7.62 -2.91 -0.02 3.72 16 39 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 41 H 0.01 0.71 8.08 -2.39 -0.02 0.69 16 42 H 0.27 14.53 8.31 -92.70 -0.77 13.75 16 43 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 44 H 0.16 3.68 7.62 -2.91 -0.02 3.66 16 Total: -1.00 -71.00 378.29 -2.40 -73.40 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.52 Total: 17.93 kcal Atomic # 6 Polarization: -59.67 SS G_CDS: 3.33 Total: -56.34 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -0.55 Total: -71.53 kcal Atomic # 8 Polarization: -67.33 SS G_CDS: -6.37 Total: -73.70 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 65.38 SS G_CDS: -0.32 Total: 65.06 kcal Total: -71.00 -2.40 -73.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885028652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.737 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds