Wall clock time and date at job start Tue Mar 31 2020 15:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47378 * 2 1 4 4 C 1.52998 * 109.46881 * 119.99891 * 2 1 3 5 5 H 1.09000 * 109.47603 * 300.00096 * 4 2 1 6 6 O 1.42901 * 109.47351 * 59.99776 * 4 2 1 7 7 C 1.53003 * 109.47367 * 179.97438 * 4 2 1 8 8 N 1.46497 * 109.47258 * 179.97438 * 7 4 2 9 9 S 1.65608 * 119.99652 * 165.00222 * 8 7 4 10 10 O 1.42104 * 106.39724 * 178.54027 * 9 8 7 11 11 O 1.42097 * 106.40199 * 311.45938 * 9 8 7 12 12 C 1.76195 * 107.21632 * 65.00196 * 9 8 7 13 13 C 1.38239 * 120.00286 * 269.72172 * 12 9 8 14 14 C 1.38237 * 120.00342 * 179.76914 * 13 12 9 15 15 C 1.38231 * 119.99516 * 0.48475 * 14 13 12 16 16 C 1.50701 * 119.99549 * 179.76799 * 15 14 13 17 17 C 1.50704 * 109.47348 * 270.02310 * 16 15 14 18 18 H 1.07998 * 119.99405 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99910 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99624 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00248 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46962 * 89.99991 * 21 19 17 23 23 H 1.48501 * 109.47002 * 209.99893 * 21 19 17 24 24 H 1.48500 * 109.47101 * 330.00204 * 21 19 17 25 25 C 1.38236 * 120.00626 * 359.79292 * 15 14 13 26 26 C 1.38237 * 119.99604 * 359.95237 * 25 15 14 27 27 H 1.09004 * 109.47300 * 300.00604 * 1 2 3 28 28 H 1.08998 * 109.46903 * 60.00061 * 1 2 3 29 29 H 1.08996 * 109.47677 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46845 * 239.99559 * 2 1 3 31 31 H 1.08993 * 109.47096 * 59.99878 * 3 2 1 32 32 H 1.09002 * 109.47112 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47054 * 299.99847 * 3 2 1 34 34 H 0.96703 * 113.99910 * 59.99847 * 6 4 2 35 35 H 1.09005 * 109.46550 * 60.00309 * 7 4 2 36 36 H 1.09000 * 109.47169 * 300.00768 * 7 4 2 37 37 H 0.96997 * 120.00126 * 345.00146 * 8 7 4 38 38 H 1.08001 * 119.99420 * 0.02562 * 13 12 9 39 39 H 1.07997 * 119.99605 * 180.25567 * 14 13 12 40 40 H 1.08995 * 109.47332 * 30.02592 * 16 15 14 41 41 H 1.09007 * 109.47020 * 150.02482 * 16 15 14 42 42 H 0.96996 * 119.99790 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.00172 * 179.97438 * 25 15 14 44 44 H 1.07994 * 119.99872 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 8 1.5635 -2.0685 1.2493 7 6 3.5699 -0.7218 1.2490 8 7 4.0582 -1.4119 2.4455 9 16 5.6402 -1.8933 2.5361 10 8 5.8048 -2.4919 3.8143 11 8 5.9242 -2.5693 1.3189 12 6 6.6296 -0.4354 2.5382 13 6 7.0797 0.0962 1.3442 14 6 7.8521 1.2428 1.3455 15 6 8.1826 1.8519 2.5415 16 6 9.0289 3.0988 2.5433 17 6 10.4847 2.7178 2.6247 18 1 10.7686 1.6768 2.6702 19 6 11.4540 3.6982 2.6412 20 7 12.7245 3.3657 2.7118 21 14 10.9628 5.4988 2.5618 22 1 10.7652 6.0191 3.9385 23 1 12.0348 6.2751 1.8884 24 1 9.6980 5.6335 1.7955 25 6 7.7373 1.3171 3.7360 26 6 6.9606 0.1736 3.7342 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.8488 -2.5866 0.4843 35 1 3.9336 0.3057 1.2489 36 1 3.9330 -1.2359 0.3590 37 1 3.4549 -1.5868 3.1847 38 1 6.8245 -0.3819 0.4100 39 1 8.2002 1.6603 0.4124 40 1 8.8510 3.6600 1.6260 41 1 8.7660 3.7152 3.4031 42 1 13.4064 4.0554 2.7237 43 1 7.9960 1.7929 4.6704 44 1 6.6131 -0.2445 4.6674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885029315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:54 Heat of formation + Delta-G solvation = -122.281364 kcal Electronic energy + Delta-G solvation = -25702.499998 eV Core-core repulsion = 21938.973955 eV Total energy + Delta-G solvation = -3763.526043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.09049 -38.91221 -37.16228 -35.79626 -34.71109 -34.57941 -33.70646 -31.76579 -30.67767 -28.49926 -27.99631 -27.16887 -23.56479 -23.46099 -22.43838 -21.07509 -20.74259 -19.39574 -17.90415 -17.58680 -17.08857 -16.93462 -16.34981 -15.79106 -15.16952 -15.10521 -14.90063 -14.46891 -14.31991 -14.28129 -13.89203 -13.32450 -13.20748 -13.04545 -12.80440 -12.65339 -12.60625 -12.47677 -12.06605 -12.01833 -11.97148 -11.91778 -11.80458 -11.75111 -11.34596 -11.02192 -10.99414 -10.94947 -10.55464 -10.32052 -10.26217 -10.13129 -9.64669 -9.54736 -8.72819 -8.67134 -8.48299 -6.20696 -4.22437 0.45522 1.22669 1.69698 3.00728 3.18203 3.26707 3.27208 3.71479 3.94187 4.04458 4.16032 4.28347 4.38062 4.44231 4.55407 4.80184 4.89162 5.05393 5.11173 5.13129 5.16005 5.17711 5.28022 5.41169 5.47597 5.54172 5.54713 5.62060 5.71210 5.75707 5.79143 5.89943 5.93857 6.12485 6.21092 6.40724 6.66315 6.67382 6.78062 6.79086 7.25851 7.25938 7.26948 7.51083 8.32223 8.82908 9.37391 10.91828 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.003050 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.103207 B = 9178.202261 C =10447.697966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.155 4.155 4 C 0.107 3.893 5 H 0.106 0.894 6 O -0.555 6.555 7 C 0.081 3.919 8 N -1.113 6.113 9 S 2.700 3.300 10 O -0.964 6.964 11 O -0.965 6.965 12 C -0.702 4.702 13 C -0.025 4.025 14 C -0.143 4.143 15 C 0.031 3.969 16 C 0.006 3.994 17 C -0.521 4.521 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.143 4.143 26 C -0.020 4.020 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.377 0.623 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.419 0.581 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.267 0.733 43 H 0.130 0.870 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.476 -5.484 -4.780 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.212 4.212 4 C 0.046 3.954 5 H 0.124 0.876 6 O -0.360 6.360 7 C -0.046 4.046 8 N -0.873 5.873 9 S 2.792 3.208 10 O -0.954 6.954 11 O -0.955 6.955 12 C -0.791 4.791 13 C -0.044 4.044 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.031 4.031 17 C -0.558 4.558 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.706 3.294 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.162 4.162 26 C -0.040 4.040 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.224 0.776 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.254 0.746 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.148 0.852 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.139 -6.056 -4.336 25.262 hybrid contribution 0.311 1.610 -0.241 1.657 sum -23.827 -4.447 -4.577 24.667 Atomic orbital electron populations 1.21748 0.94153 1.02365 1.01719 1.21808 0.97216 0.97349 0.98315 1.21923 1.01670 0.95145 1.02481 1.22185 0.90849 0.83428 0.98949 0.87618 1.86583 1.76560 1.22995 1.49908 1.22133 0.96594 0.98114 0.87785 1.55435 1.28881 1.76378 1.26610 1.01545 0.72132 0.73810 0.73338 1.93575 1.85145 1.75007 1.41703 1.93552 1.83821 1.71167 1.46915 1.30396 1.23401 1.25331 0.99972 1.20779 0.93882 0.93957 0.95811 1.21213 0.99707 0.96447 0.98800 1.20703 0.88359 0.95544 0.92316 1.18986 0.95448 0.90633 0.98028 1.20818 0.87153 0.95655 1.52197 0.90666 1.24990 0.94747 0.99081 0.94214 1.69890 0.99797 1.33818 1.49652 0.86787 0.78674 0.85135 0.78799 1.20029 1.21058 1.18951 1.21233 0.99342 0.96882 0.98750 1.20781 0.93992 0.93383 0.95826 0.92653 0.92669 0.91962 0.90476 0.92225 0.91803 0.92123 0.77559 0.90263 0.89894 0.74623 0.85174 0.85244 0.94814 0.95251 0.92349 0.85224 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.05 37.16 0.34 -0.46 16 2 C -0.13 -0.71 2.69 -90.62 -0.24 -0.95 16 3 C -0.15 -0.89 8.84 37.16 0.33 -0.56 16 4 C 0.11 0.69 2.64 -26.73 -0.07 0.62 16 5 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 6 O -0.56 -4.06 12.53 -35.23 -0.44 -4.50 16 7 C 0.08 0.62 5.53 -4.04 -0.02 0.60 16 8 N -1.11 -10.38 5.86 -10.61 -0.06 -10.44 16 9 S 2.70 35.90 5.74 -107.50 -0.62 35.29 16 10 O -0.96 -15.42 17.28 -57.17 -0.99 -16.41 16 11 O -0.96 -14.96 16.75 -57.17 -0.96 -15.92 16 12 C -0.70 -10.53 5.95 -39.58 -0.24 -10.77 16 13 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 14 C -0.14 -2.49 9.70 -39.58 -0.38 -2.88 16 15 C 0.03 0.61 5.07 -104.62 -0.53 0.08 16 16 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 17 C -0.52 -14.20 9.65 -34.44 -0.33 -14.53 16 18 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 21 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 25 C -0.14 -2.54 9.70 -39.58 -0.38 -2.93 16 26 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.38 1.79 9.05 45.56 0.41 2.20 16 35 H 0.08 0.57 6.43 -51.93 -0.33 0.24 16 36 H 0.08 0.62 7.75 -51.93 -0.40 0.22 16 37 H 0.42 3.34 8.65 -34.48 -0.30 3.05 16 38 H 0.13 1.67 7.61 -52.49 -0.40 1.27 16 39 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 41 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 44 H 0.13 1.78 7.62 -52.49 -0.40 1.38 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -34.45 374.98 -9.71 -44.15 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.88 Total: 3.61 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -2.51 Total: -31.29 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.71 Total: -36.34 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -2.39 Total: -36.83 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Atomic # 16 Polarization: 35.90 SS G_CDS: -0.62 Total: 35.29 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.45 -9.71 -44.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885029315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.128 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds