Wall clock time and date at job start Tue Mar 31 2020 15:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47378 * 2 1 4 4 C 1.52998 * 109.46881 * 119.99891 * 2 1 3 5 5 H 1.09000 * 109.47603 * 300.00096 * 4 2 1 6 6 O 1.42901 * 109.47351 * 59.99776 * 4 2 1 7 7 C 1.53003 * 109.47367 * 179.97438 * 4 2 1 8 8 N 1.46497 * 109.47258 * 179.97438 * 7 4 2 9 9 S 1.65608 * 119.99652 * 165.00222 * 8 7 4 10 10 O 1.42104 * 106.39724 * 178.54027 * 9 8 7 11 11 O 1.42097 * 106.40199 * 311.45938 * 9 8 7 12 12 C 1.76195 * 107.21632 * 65.00196 * 9 8 7 13 13 C 1.38239 * 120.00286 * 269.72172 * 12 9 8 14 14 C 1.38237 * 120.00342 * 179.76914 * 13 12 9 15 15 C 1.38231 * 119.99516 * 0.48475 * 14 13 12 16 16 C 1.50701 * 119.99549 * 179.76799 * 15 14 13 17 17 C 1.50704 * 109.47348 * 270.02310 * 16 15 14 18 18 H 1.07998 * 119.99405 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99910 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99624 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00248 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46962 * 89.99991 * 21 19 17 23 23 H 1.48501 * 109.47002 * 209.99893 * 21 19 17 24 24 H 1.48500 * 109.47101 * 330.00204 * 21 19 17 25 25 C 1.38236 * 120.00626 * 359.79292 * 15 14 13 26 26 C 1.38237 * 119.99604 * 359.95237 * 25 15 14 27 27 H 1.09004 * 109.47300 * 300.00604 * 1 2 3 28 28 H 1.08998 * 109.46903 * 60.00061 * 1 2 3 29 29 H 1.08996 * 109.47677 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46845 * 239.99559 * 2 1 3 31 31 H 1.08993 * 109.47096 * 59.99878 * 3 2 1 32 32 H 1.09002 * 109.47112 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47054 * 299.99847 * 3 2 1 34 34 H 0.96703 * 113.99910 * 59.99847 * 6 4 2 35 35 H 1.09005 * 109.46550 * 60.00309 * 7 4 2 36 36 H 1.09000 * 109.47169 * 300.00768 * 7 4 2 37 37 H 0.96997 * 120.00126 * 345.00146 * 8 7 4 38 38 H 1.08001 * 119.99420 * 0.02562 * 13 12 9 39 39 H 1.07997 * 119.99605 * 180.25567 * 14 13 12 40 40 H 1.08995 * 109.47332 * 30.02592 * 16 15 14 41 41 H 1.09007 * 109.47020 * 150.02482 * 16 15 14 42 42 H 0.96996 * 119.99790 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.00172 * 179.97438 * 25 15 14 44 44 H 1.07994 * 119.99872 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 8 1.5635 -2.0685 1.2493 7 6 3.5699 -0.7218 1.2490 8 7 4.0582 -1.4119 2.4455 9 16 5.6402 -1.8933 2.5361 10 8 5.8048 -2.4919 3.8143 11 8 5.9242 -2.5693 1.3189 12 6 6.6296 -0.4354 2.5382 13 6 7.0797 0.0962 1.3442 14 6 7.8521 1.2428 1.3455 15 6 8.1826 1.8519 2.5415 16 6 9.0289 3.0988 2.5433 17 6 10.4847 2.7178 2.6247 18 1 10.7686 1.6768 2.6702 19 6 11.4540 3.6982 2.6412 20 7 12.7245 3.3657 2.7118 21 14 10.9628 5.4988 2.5618 22 1 10.7652 6.0191 3.9385 23 1 12.0348 6.2751 1.8884 24 1 9.6980 5.6335 1.7955 25 6 7.7373 1.3171 3.7360 26 6 6.9606 0.1736 3.7342 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.8488 -2.5866 0.4843 35 1 3.9336 0.3057 1.2489 36 1 3.9330 -1.2359 0.3590 37 1 3.4549 -1.5868 3.1847 38 1 6.8245 -0.3819 0.4100 39 1 8.2002 1.6603 0.4124 40 1 8.8510 3.6600 1.6260 41 1 8.7660 3.7152 3.4031 42 1 13.4064 4.0554 2.7237 43 1 7.9960 1.7929 4.6704 44 1 6.6131 -0.2445 4.6674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885029315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:53 Heat of formation + Delta-G solvation = -148.655670 kcal Electronic energy + Delta-G solvation = -25703.643674 eV Core-core repulsion = 21938.973955 eV Total energy + Delta-G solvation = -3764.669719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.26185 -39.60817 -38.33625 -36.98057 -35.57038 -35.41643 -35.05114 -33.55053 -31.97432 -29.71178 -29.07971 -27.62780 -25.28754 -24.10019 -23.70030 -22.32355 -21.54350 -20.41666 -19.03515 -18.98744 -18.53948 -17.83508 -17.06695 -16.80591 -16.60241 -16.12099 -15.99010 -15.52739 -15.42406 -15.32116 -14.85347 -14.61133 -14.46762 -14.20274 -13.84050 -13.64668 -13.59486 -13.42256 -13.31373 -13.21666 -13.15187 -13.01108 -12.71609 -12.56898 -12.51637 -12.22825 -12.07607 -11.93580 -11.77490 -11.72549 -11.54607 -11.46850 -10.86467 -10.83218 -10.37657 -9.96966 -9.94184 -8.34067 -6.41490 -0.63544 -0.08829 0.38666 1.36109 1.37713 1.49153 2.01712 2.32220 2.53663 2.80081 3.00429 3.28586 3.52722 3.67170 3.84903 3.87897 3.97459 4.07705 4.08543 4.27735 4.40194 4.44655 4.46157 4.54437 4.67610 4.78033 4.84665 4.84999 4.89632 4.99479 5.01002 5.06621 5.09303 5.13624 5.16986 5.28355 5.28996 5.47554 5.48952 5.50573 5.77263 5.93180 6.07607 6.18493 6.65284 6.86324 7.22535 8.82426 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.003050 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.103207 B = 9178.202261 C =10447.697966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C -0.157 4.157 4 C 0.113 3.887 5 H 0.107 0.893 6 O -0.568 6.568 7 C 0.071 3.929 8 N -1.097 6.097 9 S 2.726 3.274 10 O -0.990 6.990 11 O -0.983 6.983 12 C -0.699 4.699 13 C -0.022 4.022 14 C -0.152 4.152 15 C -0.002 4.002 16 C 0.012 3.988 17 C -0.526 4.526 18 H 0.026 0.974 19 C 0.009 3.991 20 N -0.948 5.948 21 Si 0.954 3.046 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.240 1.240 25 C -0.155 4.155 26 C -0.022 4.022 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.387 0.613 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.428 0.572 38 H 0.158 0.842 39 H 0.136 0.864 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.269 0.731 43 H 0.133 0.867 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.146 -4.890 -5.404 28.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.142 4.142 3 C -0.214 4.214 4 C 0.052 3.948 5 H 0.125 0.875 6 O -0.375 6.375 7 C -0.055 4.055 8 N -0.860 5.860 9 S 2.816 3.184 10 O -0.980 6.980 11 O -0.973 6.973 12 C -0.786 4.786 13 C -0.041 4.041 14 C -0.171 4.171 15 C -0.002 4.002 16 C -0.025 4.025 17 C -0.564 4.564 18 H 0.044 0.956 19 C -0.189 4.189 20 N -0.588 5.588 21 Si 0.776 3.224 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.163 1.163 25 C -0.174 4.174 26 C -0.041 4.041 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.237 0.763 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.265 0.735 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.151 0.849 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -26.821 -5.465 -4.960 27.818 hybrid contribution 1.063 1.255 -0.065 1.646 sum -25.758 -4.209 -5.025 26.579 Atomic orbital electron populations 1.21732 0.94155 1.02130 1.01836 1.21766 0.97104 0.97205 0.98112 1.21943 1.01582 0.95234 1.02655 1.22147 0.89771 0.83354 0.99519 0.87519 1.86562 1.76763 1.23426 1.50797 1.22411 0.97568 0.98463 0.87066 1.55074 1.27085 1.76246 1.27642 1.00727 0.72545 0.72884 0.72212 1.93539 1.85970 1.75539 1.42932 1.93530 1.84645 1.71484 1.47621 1.30802 1.22877 1.25306 0.99652 1.21063 0.92772 0.93083 0.97140 1.21360 1.00109 0.97229 0.98407 1.20592 0.90069 0.95637 0.93928 1.18828 0.92667 0.92417 0.98623 1.21069 0.90386 0.93469 1.51496 0.95589 1.26021 0.94431 1.04742 0.93702 1.70061 1.01366 1.35699 1.51632 0.85607 0.79179 0.78046 0.79534 1.18965 1.21014 1.16315 1.21357 0.99854 0.97767 0.98397 1.21030 0.93288 0.92660 0.97164 0.92922 0.92202 0.92350 0.89707 0.92246 0.91925 0.91851 0.76336 0.89390 0.89265 0.73473 0.82493 0.84634 0.93939 0.94290 0.92223 0.84910 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.05 71.98 0.65 -0.66 16 2 C -0.12 -1.08 2.69 -10.80 -0.03 -1.11 16 3 C -0.16 -1.45 8.84 71.98 0.64 -0.81 16 4 C 0.11 1.19 2.64 30.59 0.08 1.27 16 5 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 6 O -0.57 -6.99 12.53 -148.98 -1.87 -8.86 16 7 C 0.07 0.90 5.53 86.38 0.48 1.38 16 8 N -1.10 -17.69 5.86 -187.49 -1.10 -18.79 16 9 S 2.73 66.91 5.74 -56.49 -0.32 66.58 16 10 O -0.99 -29.97 17.28 -128.00 -2.21 -32.18 16 11 O -0.98 -28.36 16.75 -128.00 -2.14 -30.50 16 12 C -0.70 -19.75 5.95 22.27 0.13 -19.61 16 13 C -0.02 -0.62 9.52 22.27 0.21 -0.41 16 14 C -0.15 -5.21 9.70 22.27 0.22 -4.99 16 15 C 0.00 -0.08 5.07 -19.87 -0.10 -0.18 16 16 C 0.01 0.52 4.17 29.10 0.12 0.64 16 17 C -0.53 -29.57 9.65 25.60 0.25 -29.32 16 18 H 0.03 1.65 7.98 -2.91 -0.02 1.63 16 19 C 0.01 0.48 5.47 84.65 0.46 0.95 16 20 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 21 Si 0.95 41.95 27.47 68.60 1.88 43.83 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 25 C -0.15 -5.45 9.70 22.27 0.22 -5.23 16 26 C -0.02 -0.67 9.52 22.27 0.21 -0.46 16 27 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.59 7.68 -2.39 -0.02 0.57 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.59 6.43 -2.39 -0.02 0.58 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.39 2.78 9.05 -74.06 -0.67 2.11 16 35 H 0.09 1.01 6.43 -2.38 -0.02 0.99 16 36 H 0.09 1.06 7.75 -2.39 -0.02 1.05 16 37 H 0.43 5.73 8.65 -96.74 -0.84 4.90 16 38 H 0.16 3.62 7.61 -2.91 -0.02 3.60 16 39 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.04 1.79 7.14 -2.39 -0.02 1.78 16 41 H 0.04 1.64 7.51 -2.38 -0.02 1.62 16 42 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 44 H 0.15 3.87 7.62 -2.91 -0.02 3.85 16 Total: -1.00 -75.38 374.98 -2.47 -77.85 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.55 Total: 18.76 kcal Atomic # 6 Polarization: -62.07 SS G_CDS: 3.54 Total: -58.53 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -0.80 Total: -76.96 kcal Atomic # 8 Polarization: -65.32 SS G_CDS: -6.22 Total: -71.54 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.83 kcal Atomic # 16 Polarization: 66.91 SS G_CDS: -0.32 Total: 66.58 kcal Total: -75.38 -2.47 -77.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885029315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.805 kcal (2) G-P(sol) polarization free energy of solvation -75.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds