Wall clock time and date at job start Tue Mar 31 2020 15:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47024 * 120.00477 * 2 1 3 5 5 H 1.09004 * 109.46881 * 299.99326 * 4 2 1 6 6 O 1.42904 * 109.47100 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47504 * 59.99687 * 4 2 1 8 8 N 1.46505 * 109.47212 * 184.99959 * 7 4 2 9 9 S 1.65596 * 119.99941 * 164.99768 * 8 7 4 10 10 O 1.42098 * 106.40050 * 178.54251 * 9 8 7 11 11 O 1.42101 * 106.40475 * 311.46396 * 9 8 7 12 12 C 1.76206 * 107.21689 * 65.00216 * 9 8 7 13 13 C 1.38233 * 119.99823 * 269.72575 * 12 9 8 14 14 C 1.38235 * 120.00016 * 179.76523 * 13 12 9 15 15 C 1.38239 * 119.99724 * 0.48838 * 14 13 12 16 16 C 1.50695 * 120.00204 * 179.76853 * 15 14 13 17 17 C 1.50699 * 109.47340 * 270.02284 * 16 15 14 18 18 H 1.08008 * 119.99834 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00138 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99748 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00223 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47145 * 90.00410 * 21 19 17 23 23 H 1.48503 * 109.46847 * 210.00341 * 21 19 17 24 24 H 1.48502 * 109.46781 * 329.99989 * 21 19 17 25 25 C 1.38238 * 119.99860 * 359.78786 * 15 14 13 26 26 C 1.38230 * 119.99805 * 89.99838 * 12 9 8 27 27 H 1.09001 * 109.46917 * 59.99433 * 1 2 3 28 28 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46741 * 300.00111 * 1 2 3 30 30 H 1.09004 * 109.46741 * 239.99889 * 2 1 3 31 31 H 1.09002 * 109.47196 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47630 * 300.00130 * 3 2 1 33 33 H 1.09004 * 109.47346 * 60.00260 * 3 2 1 34 34 H 0.96708 * 113.99258 * 299.99573 * 6 4 2 35 35 H 1.09002 * 109.47153 * 64.99951 * 7 4 2 36 36 H 1.09001 * 109.46832 * 305.00142 * 7 4 2 37 37 H 0.96997 * 119.99914 * 345.00649 * 8 7 4 38 38 H 1.08002 * 120.00194 * 359.97438 * 13 12 9 39 39 H 1.08005 * 120.00479 * 180.25449 * 14 13 12 40 40 H 1.09002 * 109.47094 * 30.01832 * 16 15 14 41 41 H 1.09005 * 109.47538 * 150.01589 * 16 15 14 42 42 H 0.97002 * 120.00101 * 179.97438 * 20 19 17 43 43 H 1.08000 * 119.99957 * 179.97438 * 25 15 14 44 44 H 1.07997 * 120.00314 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 8 3.4690 -0.7208 1.2495 7 6 1.5300 -2.1638 1.2492 8 7 1.9176 -2.8189 2.5010 9 16 1.2001 -4.2431 2.9468 10 8 1.8080 -4.6328 4.1707 11 8 -0.2002 -4.0498 2.8016 12 6 1.6613 -5.4553 1.7540 13 6 0.8773 -5.6554 0.6333 14 6 1.2417 -6.6029 -0.3049 15 6 2.3848 -7.3574 -0.1173 16 6 2.7793 -8.3940 -1.1374 17 6 2.1511 -9.7161 -0.7791 18 1 1.5286 -9.7976 0.0998 19 6 2.3717 -10.8219 -1.5726 20 7 1.8237 -11.9758 -1.2595 21 14 3.4487 -10.6811 -3.0923 22 1 4.8590 -10.9699 -2.7279 23 1 2.9919 -11.6564 -4.1147 24 1 3.3513 -9.3051 -3.6422 25 6 3.1657 -7.1612 1.0064 26 6 2.8041 -6.2100 1.9419 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.8626 -1.1623 0.4843 35 1 1.9646 -2.7029 0.4073 36 1 0.4437 -2.1650 1.1596 37 1 2.5944 -2.4182 3.0687 38 1 -0.0181 -5.0691 0.4889 39 1 0.6314 -6.7565 -1.1827 40 1 2.4341 -8.0832 -2.1235 41 1 3.8643 -8.4984 -1.1486 42 1 1.9786 -12.7536 -1.8179 43 1 4.0585 -7.7510 1.1532 44 1 3.4140 -6.0570 2.8199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885029316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:57 Heat of formation + Delta-G solvation = -122.311832 kcal Electronic energy + Delta-G solvation = -25682.307799 eV Core-core repulsion = 21918.780435 eV Total energy + Delta-G solvation = -3763.527364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.10344 -38.91225 -37.17055 -35.80402 -34.71995 -34.59315 -33.70765 -31.76623 -30.67700 -28.49679 -27.99712 -27.17568 -23.57216 -23.46290 -22.43806 -21.05005 -20.73507 -19.42431 -17.93817 -17.59562 -16.98382 -16.93480 -16.58326 -15.57260 -15.26081 -15.01059 -14.83430 -14.70840 -14.31818 -14.26409 -13.92162 -13.24108 -13.20131 -13.04088 -12.79434 -12.63971 -12.62030 -12.50158 -12.08107 -12.02649 -11.97115 -11.91917 -11.81898 -11.80175 -11.34587 -11.02003 -10.97241 -10.94995 -10.55495 -10.27951 -10.22609 -10.14641 -9.70889 -9.55648 -8.72807 -8.67094 -8.48283 -6.20685 -4.22434 0.45336 1.22692 1.69749 2.99672 3.18234 3.26680 3.27188 3.71100 3.94697 4.03339 4.13774 4.28360 4.37713 4.46349 4.54085 4.82500 4.86510 5.04503 5.09144 5.12594 5.16029 5.18081 5.27985 5.42973 5.47387 5.54050 5.54650 5.62038 5.71344 5.75862 5.79170 5.89891 5.93152 6.12523 6.21170 6.40827 6.66343 6.67447 6.78048 6.80000 7.23728 7.25880 7.26925 7.51077 8.32191 8.82879 9.37382 10.91828 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.002996 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.996450 B = 9342.186415 C =10290.684862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.127 4.127 3 C -0.142 4.142 4 C 0.106 3.894 5 H 0.107 0.893 6 O -0.556 6.556 7 C 0.080 3.920 8 N -1.115 6.115 9 S 2.698 3.302 10 O -0.964 6.964 11 O -0.964 6.964 12 C -0.701 4.701 13 C -0.025 4.025 14 C -0.143 4.143 15 C 0.031 3.969 16 C 0.006 3.994 17 C -0.521 4.521 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.143 4.143 26 C -0.020 4.020 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.377 0.623 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.420 0.580 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.267 0.733 43 H 0.130 0.870 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.262 25.514 1.866 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.147 4.147 3 C -0.200 4.200 4 C 0.045 3.955 5 H 0.125 0.875 6 O -0.362 6.362 7 C -0.047 4.047 8 N -0.875 5.875 9 S 2.790 3.210 10 O -0.954 6.954 11 O -0.954 6.954 12 C -0.790 4.790 13 C -0.044 4.044 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.031 4.031 17 C -0.558 4.558 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.706 3.294 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.162 4.162 26 C -0.039 4.039 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.225 0.775 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.255 0.745 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.148 0.852 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.464 25.440 2.989 25.619 hybrid contribution 1.155 -0.742 -1.770 2.240 sum 1.619 24.698 1.219 24.781 Atomic orbital electron populations 1.21941 0.94216 1.02664 1.02475 1.21801 0.96956 0.97622 0.98323 1.21748 1.01665 0.94856 1.01705 1.22197 0.81077 0.93185 0.99013 0.87500 1.86591 1.18702 1.81014 1.49861 1.22149 1.01709 0.94699 0.86097 1.55483 1.58168 1.40941 1.32894 1.01580 0.73496 0.72490 0.73388 1.93575 1.77930 1.82094 1.41824 1.93557 1.29752 1.85387 1.86713 1.30376 1.08490 1.22484 1.17679 1.20778 0.96298 0.96100 0.91274 1.21215 0.97713 0.96893 1.00366 1.20705 0.91257 0.90646 0.94318 1.18983 0.97375 0.93484 0.93246 1.20818 1.31629 0.90764 1.12619 0.90670 1.24990 0.95429 0.95035 0.97585 1.69891 1.43883 1.00408 1.38973 0.86784 0.81061 0.78407 0.83122 1.20026 1.21059 1.18958 1.21233 1.01519 0.98844 0.94616 1.20780 0.93033 0.92779 0.97346 0.92101 0.91741 0.92191 0.90463 0.91955 0.92666 0.92649 0.77546 0.91132 0.88956 0.74484 0.85169 0.85251 0.94822 0.95251 0.92348 0.85226 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 8.85 37.16 0.33 -0.55 16 2 C -0.13 -0.71 2.69 -90.62 -0.24 -0.96 16 3 C -0.14 -0.80 9.05 37.16 0.34 -0.46 16 4 C 0.11 0.69 2.64 -26.73 -0.07 0.62 16 5 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 6 O -0.56 -3.91 12.47 -35.23 -0.44 -4.35 16 7 C 0.08 0.62 5.65 -4.04 -0.02 0.60 16 8 N -1.11 -10.47 5.96 -10.61 -0.06 -10.53 16 9 S 2.70 35.95 5.74 -107.50 -0.62 35.33 16 10 O -0.96 -15.42 17.28 -57.17 -0.99 -16.40 16 11 O -0.96 -14.96 16.75 -57.17 -0.96 -15.92 16 12 C -0.70 -10.53 5.95 -39.59 -0.24 -10.76 16 13 C -0.03 -0.38 9.52 -39.58 -0.38 -0.76 16 14 C -0.14 -2.50 9.70 -39.58 -0.38 -2.88 16 15 C 0.03 0.61 5.07 -104.62 -0.53 0.08 16 16 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16 17 C -0.52 -14.20 9.65 -34.44 -0.33 -14.53 16 18 H 0.08 2.27 7.98 -52.48 -0.42 1.85 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 20 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 21 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 25 C -0.14 -2.54 9.70 -39.58 -0.38 -2.93 16 26 C -0.02 -0.31 9.52 -39.59 -0.38 -0.69 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.38 6.32 -51.93 -0.33 0.05 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.37 7.68 -51.93 -0.40 -0.02 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.38 1.66 9.05 45.56 0.41 2.07 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.72 5.78 -51.93 -0.30 0.42 16 37 H 0.42 3.43 8.51 -34.47 -0.29 3.14 16 38 H 0.13 1.68 7.61 -52.49 -0.40 1.28 16 39 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 40 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 41 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -34.32 374.64 -9.69 -44.00 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.86 Total: 3.66 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -2.51 Total: -31.29 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.71 Total: -36.43 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -2.38 Total: -36.68 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Atomic # 16 Polarization: 35.95 SS G_CDS: -0.62 Total: 35.33 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.32 -9.69 -44.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885029316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.310 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds