Wall clock time and date at job start Tue Mar 31 2020 15:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47024 * 120.00477 * 2 1 3 5 5 H 1.09004 * 109.46881 * 299.99326 * 4 2 1 6 6 O 1.42904 * 109.47100 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47504 * 59.99687 * 4 2 1 8 8 N 1.46505 * 109.47212 * 184.99959 * 7 4 2 9 9 S 1.65596 * 119.99941 * 164.99768 * 8 7 4 10 10 O 1.42098 * 106.40050 * 178.54251 * 9 8 7 11 11 O 1.42101 * 106.40475 * 311.46396 * 9 8 7 12 12 C 1.76206 * 107.21689 * 65.00216 * 9 8 7 13 13 C 1.38233 * 119.99823 * 269.72575 * 12 9 8 14 14 C 1.38235 * 120.00016 * 179.76523 * 13 12 9 15 15 C 1.38239 * 119.99724 * 0.48838 * 14 13 12 16 16 C 1.50695 * 120.00204 * 179.76853 * 15 14 13 17 17 C 1.50699 * 109.47340 * 270.02284 * 16 15 14 18 18 H 1.08008 * 119.99834 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00138 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99748 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00223 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47145 * 90.00410 * 21 19 17 23 23 H 1.48503 * 109.46847 * 210.00341 * 21 19 17 24 24 H 1.48502 * 109.46781 * 329.99989 * 21 19 17 25 25 C 1.38238 * 119.99860 * 359.78786 * 15 14 13 26 26 C 1.38230 * 119.99805 * 89.99838 * 12 9 8 27 27 H 1.09001 * 109.46917 * 59.99433 * 1 2 3 28 28 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46741 * 300.00111 * 1 2 3 30 30 H 1.09004 * 109.46741 * 239.99889 * 2 1 3 31 31 H 1.09002 * 109.47196 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47630 * 300.00130 * 3 2 1 33 33 H 1.09004 * 109.47346 * 60.00260 * 3 2 1 34 34 H 0.96708 * 113.99258 * 299.99573 * 6 4 2 35 35 H 1.09002 * 109.47153 * 64.99951 * 7 4 2 36 36 H 1.09001 * 109.46832 * 305.00142 * 7 4 2 37 37 H 0.96997 * 119.99914 * 345.00649 * 8 7 4 38 38 H 1.08002 * 120.00194 * 359.97438 * 13 12 9 39 39 H 1.08005 * 120.00479 * 180.25449 * 14 13 12 40 40 H 1.09002 * 109.47094 * 30.01832 * 16 15 14 41 41 H 1.09005 * 109.47538 * 150.01589 * 16 15 14 42 42 H 0.97002 * 120.00101 * 179.97438 * 20 19 17 43 43 H 1.08000 * 119.99957 * 179.97438 * 25 15 14 44 44 H 1.07997 * 120.00314 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 8 3.4690 -0.7208 1.2495 7 6 1.5300 -2.1638 1.2492 8 7 1.9176 -2.8189 2.5010 9 16 1.2001 -4.2431 2.9468 10 8 1.8080 -4.6328 4.1707 11 8 -0.2002 -4.0498 2.8016 12 6 1.6613 -5.4553 1.7540 13 6 0.8773 -5.6554 0.6333 14 6 1.2417 -6.6029 -0.3049 15 6 2.3848 -7.3574 -0.1173 16 6 2.7793 -8.3940 -1.1374 17 6 2.1511 -9.7161 -0.7791 18 1 1.5286 -9.7976 0.0998 19 6 2.3717 -10.8219 -1.5726 20 7 1.8237 -11.9758 -1.2595 21 14 3.4487 -10.6811 -3.0923 22 1 4.8590 -10.9699 -2.7279 23 1 2.9919 -11.6564 -4.1147 24 1 3.3513 -9.3051 -3.6422 25 6 3.1657 -7.1612 1.0064 26 6 2.8041 -6.2100 1.9419 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.8626 -1.1623 0.4843 35 1 1.9646 -2.7029 0.4073 36 1 0.4437 -2.1650 1.1596 37 1 2.5944 -2.4182 3.0687 38 1 -0.0181 -5.0691 0.4889 39 1 0.6314 -6.7565 -1.1827 40 1 2.4341 -8.0832 -2.1235 41 1 3.8643 -8.4984 -1.1486 42 1 1.9786 -12.7536 -1.8179 43 1 4.0585 -7.7510 1.1532 44 1 3.4140 -6.0570 2.8199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885029316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:56 Heat of formation + Delta-G solvation = -148.567396 kcal Electronic energy + Delta-G solvation = -25683.446326 eV Core-core repulsion = 21918.780435 eV Total energy + Delta-G solvation = -3764.665891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26373 -39.61701 -38.34677 -36.99038 -35.56968 -35.42686 -35.05730 -33.55148 -31.97492 -29.71251 -29.07878 -27.63123 -25.28862 -24.10779 -23.70309 -22.32559 -21.50118 -20.44696 -19.03777 -19.02098 -18.54654 -17.76075 -17.26781 -16.74969 -16.59725 -16.01018 -15.90075 -15.67423 -15.35953 -15.28670 -15.02522 -14.62448 -14.47024 -14.19303 -13.73131 -13.66956 -13.59379 -13.42265 -13.29276 -13.23697 -13.16822 -13.00533 -12.73187 -12.57321 -12.52647 -12.28334 -12.07570 -11.93639 -11.77307 -11.72587 -11.55373 -11.43012 -10.83137 -10.74756 -10.50056 -9.97055 -9.94328 -8.33982 -6.41444 -0.64041 -0.08958 0.38608 1.36273 1.37859 1.49299 2.00338 2.32356 2.52989 2.79876 3.00520 3.28481 3.49307 3.69237 3.83869 3.88697 3.97438 4.06979 4.07761 4.29450 4.37166 4.44899 4.46134 4.52354 4.67165 4.77922 4.84980 4.85673 4.90747 4.99512 5.00675 5.06313 5.09285 5.13571 5.16966 5.28353 5.29189 5.47505 5.49021 5.50274 5.77247 5.93083 6.07471 6.18492 6.65330 6.86311 7.22587 8.82506 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.002996 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.996450 B = 9342.186415 C =10290.684862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.123 4.123 3 C -0.141 4.141 4 C 0.113 3.887 5 H 0.104 0.896 6 O -0.568 6.568 7 C 0.070 3.930 8 N -1.099 6.099 9 S 2.724 3.276 10 O -0.989 6.989 11 O -0.983 6.983 12 C -0.698 4.698 13 C -0.022 4.022 14 C -0.152 4.152 15 C -0.002 4.002 16 C 0.012 3.988 17 C -0.527 4.527 18 H 0.026 0.974 19 C 0.008 3.992 20 N -0.948 5.948 21 Si 0.954 3.046 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.240 1.240 25 C -0.155 4.155 26 C -0.022 4.022 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.388 0.612 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.429 0.571 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.043 0.957 41 H 0.039 0.961 42 H 0.269 0.731 43 H 0.133 0.867 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.119 28.036 0.907 28.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C -0.198 4.198 4 C 0.052 3.948 5 H 0.122 0.878 6 O -0.375 6.375 7 C -0.056 4.056 8 N -0.862 5.862 9 S 2.815 3.185 10 O -0.979 6.979 11 O -0.973 6.973 12 C -0.785 4.785 13 C -0.041 4.041 14 C -0.171 4.171 15 C -0.002 4.002 16 C -0.025 4.025 17 C -0.564 4.564 18 H 0.044 0.956 19 C -0.189 4.189 20 N -0.588 5.588 21 Si 0.777 3.223 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.163 1.163 25 C -0.174 4.174 26 C -0.041 4.041 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.238 0.762 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.266 0.734 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.151 0.849 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.334 27.970 2.026 28.075 hybrid contribution 0.821 -1.421 -1.348 2.123 sum 2.155 26.550 0.678 26.646 Atomic orbital electron populations 1.21971 0.94254 1.02628 1.02720 1.21762 0.96854 0.97505 0.98097 1.21732 1.01370 0.94903 1.01839 1.22125 0.80970 0.92269 0.99443 0.87786 1.86572 1.18855 1.81281 1.50792 1.22429 1.02203 0.95511 0.85417 1.55124 1.58150 1.39164 1.33781 1.00769 0.72882 0.72550 0.72318 1.93539 1.78291 1.82952 1.43167 1.93535 1.31198 1.85729 1.86797 1.30772 1.07705 1.22479 1.17575 1.21061 0.96957 0.95451 0.90603 1.21362 0.97188 0.97220 1.01332 1.20592 0.93127 0.91605 0.94877 1.18826 0.97413 0.91738 0.94551 1.21070 1.30874 0.93613 1.10881 0.95608 1.26024 0.97054 0.94359 1.01476 1.70062 1.46199 1.01572 1.40935 0.85603 0.78886 0.79587 0.78262 1.18962 1.21024 1.16295 1.21354 1.01754 0.99566 0.94681 1.21020 0.93541 0.92060 0.97467 0.91654 0.91892 0.92251 0.89648 0.92358 0.92163 0.92929 0.76218 0.89876 0.88666 0.73401 0.82500 0.84633 0.93927 0.94276 0.92224 0.84922 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.85 71.98 0.64 -0.83 16 2 C -0.12 -1.09 2.69 -10.79 -0.03 -1.11 16 3 C -0.14 -1.31 9.05 71.98 0.65 -0.66 16 4 C 0.11 1.21 2.64 30.59 0.08 1.29 16 5 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 6 O -0.57 -6.60 12.47 -148.98 -1.86 -8.46 16 7 C 0.07 0.91 5.65 86.38 0.49 1.39 16 8 N -1.10 -17.92 5.96 -187.48 -1.12 -19.04 16 9 S 2.72 67.15 5.74 -56.49 -0.32 66.83 16 10 O -0.99 -29.99 17.28 -128.00 -2.21 -32.20 16 11 O -0.98 -28.51 16.75 -128.00 -2.14 -30.66 16 12 C -0.70 -19.71 5.95 22.27 0.13 -19.58 16 13 C -0.02 -0.62 9.52 22.27 0.21 -0.41 16 14 C -0.15 -5.19 9.70 22.27 0.22 -4.98 16 15 C 0.00 -0.07 5.07 -19.87 -0.10 -0.17 16 16 C 0.01 0.53 4.17 29.10 0.12 0.65 16 17 C -0.53 -29.56 9.65 25.60 0.25 -29.31 16 18 H 0.03 1.64 7.98 -2.91 -0.02 1.62 16 19 C 0.01 0.47 5.47 84.65 0.46 0.94 16 20 N -0.95 -58.46 13.96 21.45 0.30 -58.16 16 21 Si 0.95 41.90 27.47 68.60 1.88 43.79 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 25 C -0.15 -5.43 9.70 22.27 0.22 -5.22 16 26 C -0.02 -0.66 9.52 22.27 0.21 -0.44 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.60 6.32 -2.39 -0.02 0.59 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.59 7.68 -2.39 -0.02 0.57 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.39 2.41 9.05 -74.05 -0.67 1.74 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 1.22 5.78 -2.39 -0.01 1.21 16 37 H 0.43 5.93 8.51 -96.75 -0.82 5.11 16 38 H 0.16 3.62 7.61 -2.91 -0.02 3.60 16 39 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.04 1.79 7.14 -2.39 -0.02 1.78 16 41 H 0.04 1.64 7.51 -2.38 -0.02 1.62 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 44 H 0.15 3.88 7.62 -2.91 -0.02 3.86 16 Total: -1.00 -75.13 374.64 -2.46 -77.58 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.53 Total: 18.76 kcal Atomic # 6 Polarization: -61.98 SS G_CDS: 3.55 Total: -58.43 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -0.82 Total: -77.19 kcal Atomic # 8 Polarization: -65.11 SS G_CDS: -6.21 Total: -71.32 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.88 Total: 43.79 kcal Atomic # 16 Polarization: 67.15 SS G_CDS: -0.32 Total: 66.83 kcal Total: -75.13 -2.46 -77.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885029316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.984 kcal (2) G-P(sol) polarization free energy of solvation -75.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds