Wall clock time and date at job start Tue Mar 31 2020 15:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99684 * 2 1 4 4 C 1.52997 * 109.47269 * 59.99992 * 3 2 1 5 5 C 1.52999 * 109.46880 * 299.99625 * 3 2 1 6 6 C 1.52998 * 109.46878 * 179.97438 * 3 2 1 7 7 N 1.46501 * 109.47437 * 64.99731 * 6 3 2 8 8 S 1.65599 * 120.00418 * 164.99857 * 7 6 3 9 9 O 1.42100 * 106.40241 * 311.46108 * 8 7 6 10 10 O 1.42096 * 106.40379 * 178.53729 * 8 7 6 11 11 C 1.76199 * 107.21658 * 65.00023 * 8 7 6 12 12 C 1.38238 * 120.00251 * 269.72679 * 11 8 7 13 13 C 1.38228 * 120.00121 * 179.76592 * 12 11 8 14 14 C 1.38234 * 120.00010 * 0.50740 * 13 12 11 15 15 C 1.50706 * 119.99834 * 179.72215 * 14 13 12 16 16 C 1.50701 * 109.47197 * 270.02419 * 15 14 13 17 17 H 1.07992 * 120.00089 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99824 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99880 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99959 * 359.97438 * 18 16 15 21 21 H 1.48511 * 109.47230 * 90.00314 * 20 18 16 22 22 H 1.48503 * 109.46944 * 209.99688 * 20 18 16 23 23 H 1.48495 * 109.47311 * 330.00197 * 20 18 16 24 24 C 1.38229 * 119.99860 * 359.74632 * 14 13 12 25 25 C 1.38234 * 120.00019 * 90.00010 * 11 8 7 26 26 H 1.08994 * 109.46885 * 60.00417 * 1 2 3 27 27 H 1.09001 * 109.47136 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46988 * 300.00003 * 1 2 3 29 29 H 1.08997 * 109.46717 * 179.97438 * 4 3 2 30 30 H 1.08995 * 109.47067 * 299.99602 * 4 3 2 31 31 H 1.09000 * 109.47325 * 59.99785 * 4 3 2 32 32 H 1.09007 * 109.47267 * 300.00348 * 5 3 2 33 33 H 1.08995 * 109.47295 * 60.00496 * 5 3 2 34 34 H 1.08997 * 109.47012 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.47495 * 305.00050 * 6 3 2 36 36 H 1.08996 * 109.47189 * 184.99548 * 6 3 2 37 37 H 0.97001 * 119.99713 * 345.00063 * 7 6 3 38 38 H 1.08004 * 119.99572 * 0.02562 * 12 11 8 39 39 H 1.08004 * 120.00393 * 180.23620 * 13 12 11 40 40 H 1.08991 * 109.47127 * 30.02677 * 15 14 13 41 41 H 1.09005 * 109.46919 * 150.02736 * 15 14 13 42 42 H 0.96999 * 120.00028 * 180.02562 * 19 18 16 43 43 H 1.08005 * 119.99920 * 179.97438 * 24 14 13 44 44 H 1.07999 * 120.00005 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5587 2.0647 -1.2493 6 6 3.5354 1.1848 0.0006 7 7 3.9767 0.5640 -1.2508 8 16 5.5699 0.6400 -1.6961 9 8 5.9627 1.9979 -1.5510 10 8 5.6791 -0.0742 -2.9197 11 6 6.4891 -0.2741 -0.5028 12 6 6.9904 0.3609 0.6181 13 6 7.7074 -0.3572 1.5567 14 6 7.9321 -1.7082 1.3692 15 6 8.7192 -2.4899 2.3894 16 6 10.1825 -2.4532 2.0307 17 1 10.5098 -1.9172 1.1522 18 6 11.1032 -3.1040 2.8242 19 7 12.3801 -3.0724 2.5110 20 14 10.5370 -4.0305 4.3442 21 1 10.2276 -5.4367 3.9802 22 1 11.6140 -4.0094 5.3665 23 1 9.3196 -3.3822 4.8943 24 6 7.4353 -2.3421 0.2458 25 6 6.7138 -1.6251 -0.6902 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.0024 3.0604 1.2493 30 1 0.4722 2.1509 1.2492 31 1 1.8803 1.5239 2.1392 32 1 1.8804 1.5237 -2.1393 33 1 0.4722 2.1508 -1.2493 34 1 2.0024 3.0603 -1.2496 35 1 3.8508 0.5686 0.8427 36 1 3.9784 2.1766 0.0901 37 1 3.3356 0.1085 -1.8187 38 1 6.8183 1.4173 0.7626 39 1 8.0959 0.1381 2.4343 40 1 8.5756 -2.0480 3.3754 41 1 8.3737 -3.5236 2.4007 42 1 13.0279 -3.5305 3.0690 43 1 7.6113 -3.3976 0.0991 44 1 6.3263 -2.1202 -1.5683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885035699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:09 Heat of formation + Delta-G solvation = -103.800651 kcal Electronic energy + Delta-G solvation = -25883.063591 eV Core-core repulsion = 22120.338932 eV Total energy + Delta-G solvation = -3762.724659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.59014 -38.85965 -37.14104 -35.76696 -35.42975 -33.66681 -32.30924 -31.72205 -30.61510 -27.99608 -27.89518 -27.55849 -25.53271 -23.48978 -22.39688 -20.73696 -20.50235 -19.40764 -17.87015 -17.58909 -16.90193 -16.86840 -16.39295 -15.59217 -15.47989 -15.09504 -14.94916 -14.34865 -14.27436 -14.10418 -13.79394 -13.56486 -13.26868 -13.14718 -12.74614 -12.72564 -12.57865 -12.38816 -12.28235 -12.03025 -11.93230 -11.87608 -11.76385 -11.73995 -11.69141 -10.97139 -10.91526 -10.89934 -10.51052 -10.23599 -10.10242 -9.96898 -9.62841 -9.51459 -8.69502 -8.60757 -8.42449 -6.17676 -4.19116 0.50817 1.29176 1.76337 3.04603 3.21043 3.29439 3.30377 3.35441 3.75781 4.09671 4.23508 4.31463 4.39992 4.49790 4.60227 4.94002 4.98287 5.05899 5.11353 5.13892 5.17449 5.21035 5.22645 5.30371 5.35529 5.41678 5.58888 5.59098 5.60132 5.71068 5.79929 5.85011 5.88659 6.18741 6.27149 6.46763 6.71638 6.73185 6.82032 6.83019 6.87087 7.31877 7.32293 7.54851 8.35628 8.86171 9.40643 10.94890 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.002993 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.233425 B = 9351.360478 C =10194.352242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.374 6.374 3 C 0.105 3.895 4 C -0.180 4.180 5 C -0.180 4.180 6 C 0.133 3.867 7 N -1.114 6.114 8 S 2.699 3.301 9 O -0.964 6.964 10 O -0.965 6.965 11 C -0.700 4.700 12 C -0.025 4.025 13 C -0.143 4.143 14 C 0.031 3.969 15 C 0.006 3.994 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.879 3.121 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.143 4.143 25 C -0.019 4.019 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.420 0.580 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.266 0.734 43 H 0.129 0.871 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.581 9.222 -3.896 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.293 6.293 3 C 0.065 3.935 4 C -0.238 4.238 5 C -0.238 4.238 6 C 0.006 3.994 7 N -0.874 5.874 8 S 2.791 3.209 9 O -0.954 6.954 10 O -0.955 6.955 11 C -0.790 4.790 12 C -0.044 4.044 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.031 4.031 16 C -0.557 4.557 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.706 3.294 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.189 1.189 24 C -0.162 4.162 25 C -0.039 4.039 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.255 0.745 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.147 0.853 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.820 9.542 -4.455 26.961 hybrid contribution -0.395 -1.017 1.226 1.641 sum -25.215 8.525 -3.229 26.812 Atomic orbital electron populations 1.22809 0.81427 1.02780 1.00175 1.88013 1.19539 1.26762 1.95018 1.21656 0.92804 0.83925 0.95157 1.22396 1.02206 1.01266 0.97921 1.22427 1.01734 1.01415 0.98199 1.21319 0.92663 0.99039 0.86368 1.55485 1.27378 1.71585 1.32989 1.01545 0.72112 0.73831 0.73406 1.93556 1.81604 1.33524 1.86751 1.93571 1.85562 1.74473 1.41894 1.30364 1.22988 1.07906 1.17706 1.20774 0.93453 0.98919 0.91260 1.21203 1.00306 0.94344 1.00334 1.20691 0.88023 0.93948 0.94304 1.18983 0.95910 0.94934 0.93274 1.20827 0.87914 1.34417 1.12587 0.90660 1.24986 0.94704 0.95769 0.97578 1.69889 1.01172 1.43173 1.39010 0.86790 0.78810 0.80673 0.83143 1.20036 1.21085 1.18926 1.21220 0.99577 1.00790 0.94634 1.20769 0.94086 0.91640 0.97355 0.93751 0.89656 0.93745 0.90836 0.91649 0.91120 0.91323 0.91969 0.90865 0.90477 0.88765 0.74509 0.85133 0.85268 0.94814 0.95253 0.92378 0.85268 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.21 101.05 1.03 1.18 16 2 O -0.37 -3.31 10.15 -35.23 -0.36 -3.67 16 3 C 0.11 0.80 0.79 -90.62 -0.07 0.73 16 4 C -0.18 -1.08 8.25 37.16 0.31 -0.78 16 5 C -0.18 -1.19 8.03 37.16 0.30 -0.89 16 6 C 0.13 1.18 5.39 -4.04 -0.02 1.16 16 7 N -1.11 -11.27 5.40 -10.61 -0.06 -11.33 16 8 S 2.70 36.88 5.74 -107.50 -0.62 36.26 16 9 O -0.96 -15.07 16.75 -57.17 -0.96 -16.03 16 10 O -0.96 -15.61 17.28 -57.17 -0.99 -16.60 16 11 C -0.70 -10.93 5.95 -39.58 -0.24 -11.16 16 12 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 13 C -0.14 -2.58 9.70 -39.59 -0.38 -2.96 16 14 C 0.03 0.62 5.07 -104.62 -0.53 0.09 16 15 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 16 C -0.52 -14.36 9.65 -34.44 -0.33 -14.70 16 17 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 19 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 20 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 24 C -0.14 -2.63 9.70 -39.59 -0.38 -3.02 16 25 C -0.02 -0.31 9.52 -39.58 -0.38 -0.69 16 26 H 0.04 0.23 6.42 -51.93 -0.33 -0.10 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.23 6.42 -51.93 -0.33 -0.10 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.33 6.54 -51.93 -0.34 -0.01 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.48 6.90 -51.93 -0.36 0.12 16 33 H 0.06 0.34 6.54 -51.93 -0.34 0.00 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.76 7.75 -51.93 -0.40 0.35 16 37 H 0.42 3.71 7.58 -34.47 -0.26 3.45 16 38 H 0.13 1.73 7.61 -52.48 -0.40 1.33 16 39 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 40 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 41 H 0.03 0.65 7.51 -51.93 -0.39 0.26 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 44 H 0.13 1.86 7.62 -52.49 -0.40 1.46 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -34.46 370.08 -9.07 -43.53 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.47 Total: 2.23 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -1.30 Total: -29.85 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.72 Total: -37.49 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -2.30 Total: -36.30 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Atomic # 16 Polarization: 36.88 SS G_CDS: -0.62 Total: 36.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.46 -9.07 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885035699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.276 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds