Wall clock time and date at job start Tue Mar 31 2020 15:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47892 * 2 1 4 4 H 1.09002 * 109.46661 * 304.99879 * 3 2 1 5 5 O 1.42899 * 109.46800 * 64.99473 * 3 2 1 6 6 C 1.52992 * 109.47705 * 185.00069 * 3 2 1 7 7 C 1.52997 * 109.47482 * 174.99884 * 6 3 2 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 3 9 9 S 1.65596 * 119.99941 * 164.99768 * 8 7 6 10 10 O 1.42098 * 106.40050 * 178.54251 * 9 8 7 11 11 O 1.42101 * 106.40475 * 311.46396 * 9 8 7 12 12 C 1.76206 * 107.21689 * 65.00216 * 9 8 7 13 13 C 1.38233 * 119.99823 * 269.72575 * 12 9 8 14 14 C 1.38235 * 120.00016 * 179.76523 * 13 12 9 15 15 C 1.38240 * 119.99803 * 0.51028 * 14 13 12 16 16 C 1.50700 * 120.00257 * 179.72834 * 15 14 13 17 17 C 1.50708 * 109.46594 * 270.01833 * 16 15 14 18 18 H 1.08003 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99644 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00453 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99624 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47291 * 60.00201 * 21 19 17 23 23 H 1.48504 * 109.47058 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47205 * 299.99694 * 21 19 17 25 25 C 1.38239 * 119.99706 * 359.74405 * 15 14 13 26 26 C 1.38230 * 119.99805 * 89.99838 * 12 9 8 27 27 H 1.08994 * 109.47852 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47208 * 300.00546 * 1 2 3 29 29 H 1.09002 * 109.46738 * 59.99498 * 1 2 3 30 30 H 1.08998 * 109.47208 * 239.99453 * 2 1 3 31 31 H 1.09001 * 109.47204 * 120.00248 * 2 1 3 32 32 H 0.96705 * 114.00115 * 60.00909 * 5 3 2 33 33 H 1.09002 * 109.47103 * 54.99637 * 6 3 2 34 34 H 1.08998 * 109.46862 * 295.00449 * 6 3 2 35 35 H 1.09002 * 109.47153 * 59.99783 * 7 6 3 36 36 H 1.09001 * 109.46832 * 299.99974 * 7 6 3 37 37 H 0.96997 * 119.99914 * 345.00649 * 8 7 6 38 38 H 1.08002 * 120.00194 * 359.97438 * 13 12 9 39 39 H 1.07998 * 120.00732 * 180.22902 * 14 13 12 40 40 H 1.09001 * 109.47002 * 30.01196 * 16 15 14 41 41 H 1.08993 * 109.47186 * 150.02304 * 16 15 14 42 42 H 0.96998 * 120.00203 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.00064 * 179.97438 * 25 15 14 44 44 H 1.07997 * 120.00314 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6056 1.9814 -0.8419 5 8 1.6621 2.0813 1.2210 6 6 3.5649 1.4442 -0.1257 7 6 4.0647 2.8848 -0.2512 8 7 5.5248 2.8865 -0.3709 9 16 6.3116 4.2486 -0.8884 10 8 7.6993 3.9442 -0.8638 11 8 5.6322 4.6847 -2.0578 12 6 6.0538 5.4946 0.3306 13 6 4.9656 6.3416 0.2337 14 6 4.7606 7.3160 1.1926 15 6 5.6497 7.4502 2.2426 16 6 5.4296 8.5164 3.2847 17 6 6.1276 9.7834 2.8620 18 1 6.6759 9.8134 1.9320 19 6 6.0660 10.9043 3.6625 20 7 5.3987 10.8676 4.7952 21 14 6.9317 12.4746 3.1389 22 1 6.3821 12.9326 1.8376 23 1 6.7138 13.5257 4.1651 24 1 8.3868 12.2142 2.9976 25 6 6.7407 6.6065 2.3366 26 6 6.9427 5.6287 1.3806 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.0142 1.6542 2.0139 33 1 3.8571 0.8798 -1.0113 34 1 4.0030 0.9833 0.7596 35 1 3.7725 3.4491 0.6344 36 1 3.6266 3.3455 -1.1365 37 1 6.0307 2.0896 -0.1473 38 1 4.2737 6.2400 -0.5894 39 1 3.9085 7.9754 1.1190 40 1 4.3616 8.7074 3.3892 41 1 5.8338 8.1801 4.2395 42 1 5.3551 11.6563 5.3581 43 1 7.4355 6.7116 3.1568 44 1 7.7955 4.9701 1.4536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885060864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:50 Heat of formation + Delta-G solvation = -154.838086 kcal Electronic energy + Delta-G solvation = -25238.417601 eV Core-core repulsion = 21473.479793 eV Total energy + Delta-G solvation = -3764.937809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.23299 -39.22518 -38.33846 -36.97826 -36.36065 -35.59698 -33.67395 -33.31984 -31.96093 -31.18493 -29.24742 -26.35973 -25.59518 -23.75650 -22.95820 -22.48345 -22.24558 -20.51922 -19.03545 -18.59567 -18.38959 -17.34320 -17.15113 -16.89489 -16.77995 -16.38656 -15.99748 -15.66372 -15.49602 -15.14155 -15.03663 -14.61751 -14.45595 -14.05556 -13.93112 -13.64724 -13.41430 -13.40138 -13.25594 -13.19357 -13.15423 -12.84883 -12.67662 -12.65883 -12.34665 -12.34284 -12.09761 -12.03866 -11.77854 -11.69870 -11.57042 -11.42819 -10.79046 -10.65495 -10.41628 -9.96210 -9.94892 -8.27318 -6.40241 -0.61606 -0.06239 0.39794 1.38120 1.39849 1.48298 2.01972 2.34522 2.56320 2.82799 3.05140 3.30583 3.55530 3.81090 3.88513 3.93211 3.98007 4.14752 4.15959 4.30029 4.33715 4.45882 4.47591 4.61245 4.64709 4.71766 4.81654 4.87357 4.91028 4.99843 5.10325 5.10515 5.16253 5.24128 5.25505 5.26469 5.33496 5.41660 5.45789 5.66525 5.86121 5.92396 6.09491 6.12610 6.71254 6.95259 7.28720 8.82596 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.002774 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.338616 B =10091.101028 C =11434.430049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.150 4.150 3 C 0.104 3.896 4 H 0.094 0.906 5 O -0.579 6.579 6 C -0.150 4.150 7 C 0.109 3.891 8 N -1.102 6.102 9 S 2.727 3.273 10 O -0.986 6.986 11 O -0.985 6.985 12 C -0.701 4.701 13 C -0.020 4.020 14 C -0.155 4.155 15 C -0.003 4.003 16 C 0.049 3.951 17 C -0.535 4.535 18 H 0.053 0.947 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.156 4.156 26 C -0.018 4.018 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.386 0.614 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.429 0.571 38 H 0.154 0.846 39 H 0.128 0.872 40 H 0.013 0.987 41 H 0.013 0.987 42 H 0.268 0.732 43 H 0.130 0.870 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -24.647 -9.513 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.188 4.188 3 C 0.045 3.955 4 H 0.112 0.888 5 O -0.387 6.387 6 C -0.190 4.190 7 C -0.017 4.017 8 N -0.865 5.865 9 S 2.817 3.183 10 O -0.976 6.976 11 O -0.974 6.974 12 C -0.788 4.788 13 C -0.039 4.039 14 C -0.174 4.174 15 C -0.004 4.004 16 C 0.012 3.988 17 C -0.572 4.572 18 H 0.072 0.928 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.788 3.212 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.193 1.193 25 C -0.175 4.175 26 C -0.037 4.037 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.236 0.764 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.267 0.733 38 H 0.171 0.829 39 H 0.146 0.854 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.148 0.852 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.398 -23.891 -10.584 26.682 hybrid contribution 0.511 0.922 1.360 1.721 sum -4.887 -22.969 -9.225 25.230 Atomic orbital electron populations 1.21721 0.95779 1.01660 1.01813 1.22192 0.96539 0.96303 1.03761 1.21987 0.92479 0.93525 0.87550 0.88821 1.86608 1.77410 1.58049 1.16583 1.22474 0.96408 0.94978 1.05097 1.21453 0.77552 1.00120 1.02545 1.55186 1.16115 1.28865 1.86371 1.00700 0.71989 0.72621 0.72984 1.93538 1.32415 1.84295 1.87322 1.93534 1.75877 1.82300 1.45730 1.30805 1.06706 1.21910 1.19340 1.21023 0.94491 0.91715 0.96663 1.21298 1.00912 0.99884 0.95288 1.20821 0.92544 0.92232 0.94768 1.18257 0.96651 0.91534 0.92377 1.21260 1.33144 0.96369 1.06456 0.92823 1.25870 0.95951 1.02370 0.94782 1.70045 1.42408 1.31065 1.12932 0.85515 0.79143 0.78317 0.78205 1.19394 1.20351 1.19339 1.21314 0.98375 0.96765 1.01038 1.21026 0.96344 0.95820 0.90547 0.92199 0.93115 0.93092 0.89970 0.90612 0.76449 0.88746 0.89117 0.91263 0.90586 0.73308 0.82854 0.85370 0.96895 0.96837 0.92351 0.85227 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.81 71.98 0.71 -0.86 16 2 C -0.15 -1.18 5.61 30.59 0.17 -1.01 16 3 C 0.10 1.11 2.97 30.59 0.09 1.20 16 4 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 5 O -0.58 -8.30 12.41 -148.98 -1.85 -10.14 16 6 C -0.15 -1.33 5.03 30.59 0.15 -1.18 16 7 C 0.11 1.62 6.12 86.38 0.53 2.15 16 8 N -1.10 -17.51 6.00 -187.48 -1.12 -18.64 16 9 S 2.73 67.72 5.74 -56.49 -0.32 67.39 16 10 O -0.99 -28.80 17.28 -128.00 -2.21 -31.01 16 11 O -0.98 -29.34 16.75 -128.00 -2.14 -31.48 16 12 C -0.70 -20.84 5.95 22.27 0.13 -20.70 16 13 C -0.02 -0.63 9.52 22.27 0.21 -0.42 16 14 C -0.15 -5.88 9.70 22.27 0.22 -5.66 16 15 C 0.00 -0.14 5.07 -19.86 -0.10 -0.24 16 16 C 0.05 2.52 5.10 29.10 0.15 2.67 16 17 C -0.53 -30.01 9.09 25.60 0.23 -29.78 16 18 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 19 C 0.01 0.52 5.46 84.65 0.46 0.99 16 20 N -0.93 -54.57 13.29 21.45 0.28 -54.28 16 21 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 C -0.16 -5.87 9.70 22.27 0.22 -5.65 16 26 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.63 7.82 -2.39 -0.02 0.62 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.39 3.05 9.05 -74.05 -0.67 2.38 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 1.15 7.82 -2.39 -0.02 1.14 16 36 H 0.08 1.22 7.75 -2.39 -0.02 1.20 16 37 H 0.43 4.53 8.65 -96.75 -0.84 3.69 16 38 H 0.15 4.06 7.61 -2.91 -0.02 4.04 16 39 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 40 H 0.01 0.70 8.09 -2.39 -0.02 0.68 16 41 H 0.01 0.73 8.08 -2.39 -0.02 0.71 16 42 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 44 H 0.16 3.99 7.62 -2.91 -0.02 3.97 16 Total: -1.00 -73.53 382.64 -2.46 -75.99 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -0.50 Total: 15.13 kcal Atomic # 6 Polarization: -62.24 SS G_CDS: 3.38 Total: -58.86 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -0.84 Total: -72.92 kcal Atomic # 8 Polarization: -66.43 SS G_CDS: -6.20 Total: -72.64 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 67.72 SS G_CDS: -0.32 Total: 67.39 kcal Total: -73.53 -2.46 -75.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885060864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.844 kcal (2) G-P(sol) polarization free energy of solvation -73.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds