Wall clock time and date at job start Tue Mar 31 2020 15:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47327 * 2 1 4 4 C 1.53003 * 109.47210 * 239.99804 * 2 1 3 5 5 O 1.42904 * 109.46906 * 60.00440 * 4 2 1 6 6 C 1.53002 * 109.46953 * 119.99729 * 2 1 3 7 7 N 1.46500 * 109.47122 * 300.00091 * 6 2 1 8 8 S 1.65599 * 119.99879 * 164.99639 * 7 6 2 9 9 O 1.42101 * 106.40542 * 311.46159 * 8 7 6 10 10 O 1.42098 * 106.40229 * 178.53922 * 8 7 6 11 11 C 1.76203 * 107.21703 * 65.00041 * 8 7 6 12 12 C 1.38233 * 120.00082 * 90.00045 * 11 8 7 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38232 * 119.99735 * 359.49690 * 24 14 13 26 26 H 1.08999 * 109.47264 * 300.00375 * 1 2 3 27 27 H 1.09005 * 109.47130 * 60.00030 * 1 2 3 28 28 H 1.08995 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47256 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47086 * 299.99934 * 3 2 1 31 31 H 1.08999 * 109.47255 * 59.99620 * 3 2 1 32 32 H 1.08995 * 109.46874 * 180.02562 * 4 2 1 33 33 H 1.08995 * 109.46936 * 300.00420 * 4 2 1 34 34 H 0.96702 * 113.99291 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47527 * 179.97438 * 6 2 1 36 36 H 1.09003 * 109.46770 * 60.00029 * 6 2 1 37 37 H 0.96990 * 120.00143 * 345.00111 * 7 6 2 38 38 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 39 39 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 41 41 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 42 42 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 44 44 H 1.08008 * 119.99912 * 180.25278 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5637 -0.0476 -2.4160 6 6 2.0400 -0.7212 1.2493 7 7 1.5516 -0.0305 2.4454 8 16 1.6254 -0.7780 3.9213 9 8 1.0836 -2.0791 3.7397 10 8 1.1153 0.1511 4.8676 11 6 3.3299 -0.9986 4.3095 12 6 4.0137 -0.0170 5.0020 13 6 5.3509 -0.1902 5.3071 14 6 6.0043 -1.3449 4.9191 15 6 7.4621 -1.5335 5.2511 16 6 7.5885 -2.2128 6.5904 17 1 6.7018 -2.4807 7.1458 18 6 8.8361 -2.4865 7.1095 19 7 8.9464 -3.0744 8.2809 20 14 10.3697 -2.0226 6.1492 21 1 10.7900 -0.6479 6.5215 22 1 11.4613 -2.9775 6.4683 23 1 10.0769 -2.0737 4.6942 24 6 5.3220 -2.3241 4.2215 25 6 3.9836 -2.1531 3.9211 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -1.7489 -1.2492 34 1 1.8488 -0.4514 -3.2472 35 1 3.1299 -0.7217 1.2492 36 1 1.6766 -1.7489 1.2493 37 1 1.1850 0.8645 2.3729 38 1 3.5034 0.8854 5.3048 39 1 5.8851 0.5770 5.8478 40 1 7.9549 -0.5620 5.2884 41 1 7.9323 -2.1503 4.4851 42 1 9.8241 -3.2673 8.6459 43 1 5.8336 -3.2243 3.9145 44 1 3.4494 -2.9199 3.3796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885065793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:05 Heat of formation + Delta-G solvation = -117.005037 kcal Electronic energy + Delta-G solvation = -25786.766821 eV Core-core repulsion = 22023.469576 eV Total energy + Delta-G solvation = -3763.297244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.05965 -38.89995 -37.17122 -36.22809 -35.79386 -33.70745 -32.90231 -31.75850 -30.66690 -27.99469 -27.54881 -27.16877 -25.37236 -23.52939 -22.44507 -20.77033 -19.64041 -19.37629 -18.02103 -17.87333 -17.20056 -16.93027 -16.20089 -15.60128 -15.27717 -15.09955 -14.79462 -14.52236 -14.30679 -14.23669 -13.88037 -13.73750 -13.19738 -12.98600 -12.79340 -12.67607 -12.53795 -12.16468 -12.14266 -12.03896 -11.95503 -11.91217 -11.79591 -11.34810 -11.11591 -10.99105 -10.94277 -10.91900 -10.54845 -10.34888 -10.27066 -10.13567 -9.68139 -9.55057 -8.72343 -8.66034 -8.47387 -6.20312 -4.22028 0.45506 1.23877 1.70880 3.00084 3.18518 3.27036 3.27577 3.71041 3.80835 4.04632 4.28733 4.35859 4.37394 4.45959 4.65622 4.95337 5.04508 5.07910 5.12815 5.15654 5.17132 5.19294 5.39480 5.48782 5.48834 5.55219 5.65165 5.70600 5.73016 5.80026 5.84890 6.02390 6.04213 6.13576 6.22100 6.41676 6.67016 6.68337 6.77135 6.78932 7.23301 7.26845 7.27802 7.51620 8.32668 8.83315 9.37816 10.92226 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.002971 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.199759 B = 9421.952559 C =10422.754194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 C -0.140 4.140 4 C 0.086 3.914 5 O -0.569 6.569 6 C 0.126 3.874 7 N -1.116 6.116 8 S 2.699 3.301 9 O -0.963 6.963 10 O -0.964 6.964 11 C -0.701 4.701 12 C -0.020 4.020 13 C -0.143 4.143 14 C 0.031 3.969 15 C 0.006 3.994 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.879 3.121 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.143 4.143 25 C -0.024 4.024 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.379 0.621 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.416 0.584 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.267 0.733 43 H 0.130 0.870 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.772 7.006 -20.533 25.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.197 4.197 4 C 0.007 3.993 5 O -0.374 6.374 6 C -0.001 4.001 7 N -0.877 5.877 8 S 2.791 3.209 9 O -0.953 6.953 10 O -0.955 6.955 11 C -0.790 4.790 12 C -0.040 4.040 13 C -0.162 4.162 14 C 0.031 3.969 15 C -0.031 4.031 16 C -0.558 4.558 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.706 3.294 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.162 4.162 25 C -0.044 4.044 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.226 0.774 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.252 0.748 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.147 0.853 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.567 6.880 -19.415 25.228 hybrid contribution 1.904 0.148 -0.718 2.040 sum -12.662 7.028 -20.133 24.801 Atomic orbital electron populations 1.21802 0.93329 1.02307 1.02199 1.20716 0.97242 0.96616 0.92513 1.21811 1.01112 0.94592 1.02182 1.22114 0.97446 0.94678 0.85064 1.86446 1.77568 1.57370 1.16006 1.21248 0.98919 0.96190 0.83708 1.55568 1.78801 1.30286 1.23015 1.01552 0.74106 0.73286 0.71927 1.93560 1.76790 1.39453 1.85461 1.93574 1.78729 1.63884 1.59271 1.30370 1.25440 1.04616 1.18561 1.20773 0.94331 0.96428 0.92431 1.21226 0.94346 0.98934 1.01721 1.20698 0.98035 0.91035 0.87146 1.18985 0.87625 0.97945 0.98542 1.20820 0.94518 1.39341 1.01136 0.90661 1.24989 0.98929 0.94383 0.94731 1.69890 1.24387 1.41540 1.17365 0.86787 0.82926 0.78728 0.80950 1.20034 1.21058 1.18954 1.21212 0.94145 0.99843 1.00996 1.20781 0.94570 0.94092 0.94921 0.92449 0.91627 0.92458 0.92393 0.91491 0.92553 0.93164 0.93165 0.77372 0.91147 0.89897 0.74810 0.85098 0.85253 0.95257 0.94819 0.92352 0.85254 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.16 37.16 0.30 -0.76 16 2 C -0.07 -0.51 0.62 -154.51 -0.10 -0.61 16 3 C -0.14 -1.02 8.16 37.16 0.30 -0.72 16 4 C 0.09 0.54 5.91 37.16 0.22 0.76 16 5 O -0.57 -3.73 12.31 -35.23 -0.43 -4.16 16 6 C 0.13 1.03 5.11 -4.04 -0.02 1.01 16 7 N -1.12 -10.40 5.33 -10.61 -0.06 -10.46 16 8 S 2.70 35.69 5.74 -107.50 -0.62 35.07 16 9 O -0.96 -14.95 16.75 -57.17 -0.96 -15.91 16 10 O -0.96 -15.17 17.28 -57.17 -0.99 -16.16 16 11 C -0.70 -10.51 5.95 -39.58 -0.24 -10.74 16 12 C -0.02 -0.32 9.52 -39.58 -0.38 -0.69 16 13 C -0.14 -2.55 9.70 -39.58 -0.38 -2.94 16 14 C 0.03 0.61 5.07 -104.62 -0.53 0.08 16 15 C 0.01 0.14 4.17 -29.03 -0.12 0.01 16 16 C -0.52 -14.22 9.65 -34.44 -0.33 -14.55 16 17 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 20 Si 0.88 20.47 27.46 -169.99 -4.67 15.81 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.26 -5.83 6.55 56.52 0.37 -5.46 16 24 C -0.14 -2.51 9.70 -39.59 -0.38 -2.89 16 25 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 26 H 0.06 0.42 7.20 -51.93 -0.37 0.05 16 27 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.52 7.68 -51.93 -0.40 0.13 16 31 H 0.06 0.38 6.60 -51.93 -0.34 0.03 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.38 0.94 9.12 45.56 0.42 1.36 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 37 H 0.42 3.17 6.47 -34.47 -0.22 2.95 16 38 H 0.13 1.77 7.62 -52.49 -0.40 1.37 16 39 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 40 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 41 H 0.03 0.74 7.15 -51.93 -0.37 0.36 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 44 H 0.13 1.68 7.62 -52.48 -0.40 1.28 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -34.87 371.84 -9.30 -44.18 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.83 Total: 2.83 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: -2.13 Total: -30.86 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.72 Total: -36.40 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -2.38 Total: -36.23 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.81 kcal Atomic # 16 Polarization: 35.69 SS G_CDS: -0.62 Total: 35.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.87 -9.30 -44.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885065793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.827 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds