Wall clock time and date at job start Tue Mar 31 2020 15:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47327 * 2 1 4 4 C 1.53003 * 109.47210 * 239.99804 * 2 1 3 5 5 O 1.42904 * 109.46906 * 60.00440 * 4 2 1 6 6 C 1.53002 * 109.46953 * 119.99729 * 2 1 3 7 7 N 1.46500 * 109.47122 * 300.00091 * 6 2 1 8 8 S 1.65599 * 119.99879 * 164.99639 * 7 6 2 9 9 O 1.42101 * 106.40542 * 311.46159 * 8 7 6 10 10 O 1.42098 * 106.40229 * 178.53922 * 8 7 6 11 11 C 1.76203 * 107.21703 * 65.00041 * 8 7 6 12 12 C 1.38233 * 120.00082 * 90.00045 * 11 8 7 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38232 * 119.99735 * 359.49690 * 24 14 13 26 26 H 1.08999 * 109.47264 * 300.00375 * 1 2 3 27 27 H 1.09005 * 109.47130 * 60.00030 * 1 2 3 28 28 H 1.08995 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47256 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47086 * 299.99934 * 3 2 1 31 31 H 1.08999 * 109.47255 * 59.99620 * 3 2 1 32 32 H 1.08995 * 109.46874 * 180.02562 * 4 2 1 33 33 H 1.08995 * 109.46936 * 300.00420 * 4 2 1 34 34 H 0.96702 * 113.99291 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47527 * 179.97438 * 6 2 1 36 36 H 1.09003 * 109.46770 * 60.00029 * 6 2 1 37 37 H 0.96990 * 120.00143 * 345.00111 * 7 6 2 38 38 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 39 39 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 41 41 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 42 42 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 44 44 H 1.08008 * 119.99912 * 180.25278 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5637 -0.0476 -2.4160 6 6 2.0400 -0.7212 1.2493 7 7 1.5516 -0.0305 2.4454 8 16 1.6254 -0.7780 3.9213 9 8 1.0836 -2.0791 3.7397 10 8 1.1153 0.1511 4.8676 11 6 3.3299 -0.9986 4.3095 12 6 4.0137 -0.0170 5.0020 13 6 5.3509 -0.1902 5.3071 14 6 6.0043 -1.3449 4.9191 15 6 7.4621 -1.5335 5.2511 16 6 7.5885 -2.2128 6.5904 17 1 6.7018 -2.4807 7.1458 18 6 8.8361 -2.4865 7.1095 19 7 8.9464 -3.0744 8.2809 20 14 10.3697 -2.0226 6.1492 21 1 10.7900 -0.6479 6.5215 22 1 11.4613 -2.9775 6.4683 23 1 10.0769 -2.0737 4.6942 24 6 5.3220 -2.3241 4.2215 25 6 3.9836 -2.1531 3.9211 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -1.7489 -1.2492 34 1 1.8488 -0.4514 -3.2472 35 1 3.1299 -0.7217 1.2492 36 1 1.6766 -1.7489 1.2493 37 1 1.1850 0.8645 2.3729 38 1 3.5034 0.8854 5.3048 39 1 5.8851 0.5770 5.8478 40 1 7.9549 -0.5620 5.2884 41 1 7.9323 -2.1503 4.4851 42 1 9.8241 -3.2673 8.6459 43 1 5.8336 -3.2243 3.9145 44 1 3.4494 -2.9199 3.3796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885065793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:04 Heat of formation + Delta-G solvation = -143.669856 kcal Electronic energy + Delta-G solvation = -25787.923094 eV Core-core repulsion = 22023.469576 eV Total energy + Delta-G solvation = -3764.453518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.25088 -39.61115 -38.33310 -36.97861 -36.77956 -35.54224 -33.64082 -33.50940 -31.96176 -29.70777 -28.11671 -27.73654 -25.97974 -25.27937 -23.74366 -22.30967 -20.59500 -20.07912 -19.04486 -19.02635 -18.56602 -18.14432 -17.13869 -16.75779 -16.32547 -16.11898 -15.96918 -15.60854 -15.47383 -15.27378 -14.87852 -14.61093 -14.47018 -14.33541 -14.16931 -13.62637 -13.50043 -13.45005 -13.28368 -13.17583 -13.11814 -13.06981 -12.72203 -12.56312 -12.51188 -12.06966 -11.93489 -11.91472 -11.74224 -11.71563 -11.52647 -11.43264 -10.83076 -10.78078 -10.47592 -9.95653 -9.93420 -8.33936 -6.41348 -0.63307 -0.07426 0.40003 1.36167 1.37763 1.49239 2.01297 2.32344 2.54214 2.81038 3.00555 3.24086 3.45755 3.76235 3.83788 3.88860 3.98739 4.08584 4.14677 4.37700 4.45581 4.46969 4.52680 4.56779 4.68218 4.79042 4.84324 4.85880 4.86652 4.91242 4.99894 5.08657 5.10187 5.13594 5.17502 5.24306 5.29493 5.46017 5.47076 5.49231 5.78228 5.94323 6.06440 6.18770 6.65474 6.98191 7.22714 8.82579 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.002971 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.199759 B = 9421.952559 C =10422.754194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.139 4.139 4 C 0.084 3.916 5 O -0.585 6.585 6 C 0.118 3.882 7 N -1.100 6.100 8 S 2.727 3.273 9 O -0.982 6.982 10 O -0.987 6.987 11 C -0.698 4.698 12 C -0.021 4.021 13 C -0.155 4.155 14 C -0.002 4.002 15 C 0.012 3.988 16 C -0.526 4.526 17 H 0.026 0.974 18 C 0.009 3.991 19 N -0.948 5.948 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.240 1.240 24 C -0.153 4.153 25 C -0.021 4.021 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.396 0.604 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.426 0.574 38 H 0.153 0.847 39 H 0.132 0.868 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.269 0.731 43 H 0.136 0.864 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.008 7.861 -23.098 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.197 4.197 4 C 0.006 3.994 5 O -0.393 6.393 6 C -0.008 4.008 7 N -0.864 5.864 8 S 2.817 3.183 9 O -0.972 6.972 10 O -0.978 6.978 11 C -0.785 4.785 12 C -0.041 4.041 13 C -0.174 4.174 14 C -0.003 4.003 15 C -0.025 4.025 16 C -0.564 4.564 17 H 0.044 0.956 18 C -0.189 4.189 19 N -0.588 5.588 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.163 1.163 24 C -0.172 4.172 25 C -0.040 4.040 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.246 0.754 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.265 0.735 38 H 0.171 0.829 39 H 0.150 0.850 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.153 0.847 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.802 7.744 -22.001 27.624 hybrid contribution 1.790 -0.116 0.045 1.794 sum -13.012 7.628 -21.956 26.638 Atomic orbital electron populations 1.21807 0.93693 1.02196 1.02025 1.20695 0.96912 0.96639 0.92668 1.21807 1.01156 0.94602 1.02114 1.22119 0.97897 0.94795 0.84613 1.86400 1.77918 1.58021 1.16964 1.21473 0.99694 0.96423 0.83241 1.55205 1.78483 1.30797 1.21957 1.00708 0.72881 0.72570 0.72160 1.93538 1.76761 1.40867 1.85994 1.93542 1.78834 1.64363 1.61017 1.30781 1.26372 1.04091 1.17278 1.21027 0.93599 0.97485 0.91951 1.21351 0.95422 0.98687 1.01971 1.20587 0.97004 0.92881 0.89778 1.18828 0.90223 0.97709 0.95783 1.21074 0.92924 1.39329 1.03101 0.95568 1.26018 1.02936 0.94204 0.95724 1.70061 1.25443 1.43594 1.19685 0.85608 0.77706 0.78573 0.80486 1.18965 1.20996 1.16344 1.21360 0.95210 0.99615 1.00984 1.21070 0.93787 0.94742 0.94416 0.92362 0.92092 0.92534 0.92287 0.92128 0.92091 0.92359 0.92378 0.75436 0.90051 0.89448 0.73513 0.82897 0.84959 0.94317 0.93960 0.92219 0.84652 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.16 71.98 0.59 -1.29 16 2 C -0.07 -0.83 0.62 -52.18 -0.03 -0.87 16 3 C -0.14 -1.74 8.16 71.98 0.59 -1.16 16 4 C 0.08 0.87 5.91 71.98 0.43 1.29 16 5 O -0.58 -6.50 12.31 -148.98 -1.83 -8.33 16 6 C 0.12 1.60 5.11 86.38 0.44 2.05 16 7 N -1.10 -17.67 5.33 -187.49 -1.00 -18.67 16 8 S 2.73 66.18 5.74 -56.49 -0.32 65.86 16 9 O -0.98 -28.32 16.75 -128.00 -2.14 -30.47 16 10 O -0.99 -29.18 17.28 -128.00 -2.21 -31.39 16 11 C -0.70 -19.60 5.95 22.27 0.13 -19.47 16 12 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 13 C -0.16 -5.46 9.70 22.27 0.22 -5.25 16 14 C 0.00 -0.08 5.07 -19.87 -0.10 -0.19 16 15 C 0.01 0.52 4.17 29.10 0.12 0.64 16 16 C -0.53 -29.61 9.65 25.60 0.25 -29.37 16 17 H 0.03 1.67 7.98 -2.91 -0.02 1.65 16 18 C 0.01 0.49 5.47 84.65 0.46 0.95 16 19 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 20 Si 0.95 42.01 27.46 68.60 1.88 43.90 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.24 -9.54 6.55 99.48 0.65 -8.89 16 24 C -0.15 -5.23 9.70 22.27 0.22 -5.02 16 25 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 26 H 0.06 0.75 7.20 -2.39 -0.02 0.73 16 27 H 0.06 0.88 7.68 -2.38 -0.02 0.86 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.85 7.68 -2.39 -0.02 0.83 16 31 H 0.06 0.68 6.60 -2.39 -0.02 0.66 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.40 1.17 9.12 -74.06 -0.68 0.50 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 36 H 0.09 1.16 7.75 -2.39 -0.02 1.14 16 37 H 0.43 5.39 6.47 -96.76 -0.63 4.76 16 38 H 0.15 3.83 7.62 -2.91 -0.02 3.81 16 39 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.04 1.63 7.51 -2.39 -0.02 1.61 16 41 H 0.04 1.79 7.15 -2.38 -0.02 1.77 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 44 H 0.16 3.63 7.62 -2.91 -0.02 3.61 16 Total: -1.00 -76.31 371.84 -1.94 -78.26 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.34 Total: 17.57 kcal Atomic # 6 Polarization: -62.22 SS G_CDS: 3.73 Total: -58.49 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -0.70 Total: -76.90 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: -6.19 Total: -70.19 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.88 Total: 43.90 kcal Atomic # 16 Polarization: 66.18 SS G_CDS: -0.32 Total: 65.86 kcal Total: -76.31 -1.94 -78.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885065793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.412 kcal (2) G-P(sol) polarization free energy of solvation -76.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds