Wall clock time and date at job start Tue Mar 31 2020 14:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47211 * 2 1 4 4 O 1.42898 * 109.47421 * 239.99502 * 2 1 3 5 5 C 1.53003 * 109.47136 * 119.99797 * 2 1 3 6 6 C 1.53002 * 109.47224 * 60.00222 * 5 2 1 7 7 N 1.46500 * 109.47122 * 180.02562 * 6 5 2 8 8 S 1.65599 * 119.99879 * 164.99639 * 7 6 5 9 9 O 1.42101 * 106.40542 * 311.46159 * 8 7 6 10 10 O 1.42098 * 106.40229 * 178.53922 * 8 7 6 11 11 C 1.76203 * 107.21703 * 65.00041 * 8 7 6 12 12 C 1.38233 * 120.00082 * 90.00045 * 11 8 7 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38232 * 119.99735 * 359.49690 * 24 14 13 26 26 H 1.09004 * 109.47256 * 300.00209 * 1 2 3 27 27 H 1.08999 * 109.47255 * 60.00342 * 1 2 3 28 28 H 1.09008 * 109.47227 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47098 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46732 * 299.99978 * 3 2 1 31 31 H 1.08998 * 109.46755 * 59.99772 * 3 2 1 32 32 H 0.96699 * 114.00287 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.47043 * 300.00124 * 5 2 1 34 34 H 1.09003 * 109.47217 * 179.97438 * 5 2 1 35 35 H 1.08995 * 109.47527 * 59.99456 * 6 5 2 36 36 H 1.09003 * 109.46770 * 299.99963 * 6 5 2 37 37 H 0.96990 * 120.00143 * 345.00111 * 7 6 5 38 38 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 39 39 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 41 41 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 42 42 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 44 44 H 1.08008 * 119.99912 * 180.25278 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.5301 -2.1638 1.2493 7 7 2.0179 -2.8541 2.4458 8 16 1.3376 -4.2916 2.9076 9 8 -0.0697 -4.0958 2.8829 10 8 2.0431 -4.7157 4.0659 11 6 1.6984 -5.4682 1.6466 12 6 2.8518 -6.2267 1.7186 13 6 3.1346 -7.1502 0.7296 14 6 2.2643 -7.3148 -0.3316 15 6 2.5729 -8.3212 -1.4101 16 6 1.9745 -9.6538 -1.0398 17 1 1.4259 -9.7613 -0.1157 18 6 2.1326 -10.7372 -1.8777 19 7 2.8009 -10.6064 -3.0028 20 14 1.3975 -12.3910 -1.4149 21 1 0.0182 -12.4885 -1.9564 22 1 2.2310 -13.4800 -1.9846 23 1 1.3589 -12.5191 0.0640 24 6 1.1137 -6.5523 -0.4066 25 6 0.8283 -5.6326 0.5851 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 2.9704 -0.7116 -1.2330 33 1 1.6766 -0.2073 2.1393 34 1 3.1300 -0.7216 1.2491 35 1 1.8933 -2.6776 0.3594 36 1 0.4400 -2.1637 1.2493 37 1 2.7393 -2.4693 2.9676 38 1 3.5321 -6.0978 2.5475 39 1 4.0360 -7.7425 0.7857 40 1 3.6532 -8.4239 -1.5128 41 1 2.1486 -7.9824 -2.3553 42 1 2.9125 -11.3687 -3.5921 43 1 0.4359 -6.6778 -1.2380 44 1 -0.0727 -5.0397 0.5286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885117864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:40 Heat of formation + Delta-G solvation = -124.256772 kcal Electronic energy + Delta-G solvation = -25606.284079 eV Core-core repulsion = 21842.672375 eV Total energy + Delta-G solvation = -3763.611703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.07479 -38.78297 -37.13871 -35.76939 -35.53945 -33.66867 -32.84387 -31.54744 -30.56167 -28.98407 -27.73802 -27.42031 -23.72902 -23.50725 -22.31223 -20.91898 -20.63374 -19.43820 -17.92464 -17.38667 -16.57160 -16.42943 -16.40386 -15.78720 -15.32715 -15.07822 -14.66621 -14.48369 -14.35818 -14.23183 -13.75998 -13.21925 -13.08539 -12.83599 -12.66430 -12.53593 -12.43047 -12.23382 -12.09371 -12.03889 -11.93184 -11.80495 -11.68918 -11.61942 -11.47711 -10.98169 -10.93981 -10.90154 -10.51420 -10.47156 -10.26612 -9.78106 -9.68156 -9.52557 -8.57599 -8.53026 -8.37322 -6.16481 -4.21446 0.51465 1.34247 1.81128 3.06333 3.24902 3.31395 3.35864 3.76456 3.86365 4.12523 4.31390 4.37506 4.40833 4.45888 4.61268 4.84641 4.89460 5.16687 5.20166 5.22143 5.24360 5.25845 5.33690 5.42234 5.51028 5.55459 5.70771 5.73675 5.76200 5.80323 5.89347 5.92681 5.97395 6.26423 6.34464 6.52086 6.80583 6.85402 6.92272 7.30346 7.36603 7.44394 7.60134 7.78677 8.14067 8.83355 9.43518 10.93589 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002919 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.012560 B = 9591.629188 C =10673.198346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.128 3.872 3 C -0.178 4.178 4 O -0.556 6.556 5 C -0.152 4.152 6 C 0.116 3.884 7 N -1.122 6.122 8 S 2.699 3.301 9 O -0.965 6.965 10 O -0.967 6.967 11 C -0.704 4.704 12 C -0.022 4.022 13 C -0.146 4.146 14 C 0.027 3.973 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.145 4.145 25 C -0.023 4.023 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.377 0.623 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.414 0.586 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.129 0.871 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 23.486 7.196 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.086 3.914 3 C -0.235 4.235 4 O -0.362 6.362 5 C -0.191 4.191 6 C -0.010 4.010 7 N -0.881 5.881 8 S 2.791 3.209 9 O -0.955 6.955 10 O -0.958 6.958 11 C -0.793 4.793 12 C -0.042 4.042 13 C -0.165 4.165 14 C 0.027 3.973 15 C 0.003 3.997 16 C -0.555 4.555 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.164 4.164 25 C -0.043 4.043 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.224 0.776 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.248 0.752 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.941 23.110 7.595 24.344 hybrid contribution 0.936 -1.037 -0.167 1.407 sum -0.005 22.073 7.428 23.289 Atomic orbital electron populations 1.21872 0.92432 1.03557 1.02599 1.21169 0.95279 0.90563 0.84371 1.22489 1.01468 0.96596 1.02967 1.86609 1.26795 1.79292 1.43550 1.22482 1.01684 0.95515 0.99426 1.21342 0.99895 0.92830 0.86896 1.55593 1.53051 1.40120 1.39305 1.01513 0.73468 0.72453 0.73421 1.93554 1.29736 1.85370 1.86828 1.93564 1.74515 1.81332 1.46369 1.30293 1.06991 1.22358 1.19694 1.20760 0.93530 0.92924 0.96971 1.21241 1.01164 0.99266 0.94833 1.21113 0.90833 0.90590 0.94801 1.18540 0.98291 0.91502 0.91415 1.20971 1.34925 0.93177 1.06453 0.92293 1.25000 0.95073 0.99211 0.94856 1.69944 1.40569 1.31370 1.11112 0.86481 0.79106 0.82951 0.78879 1.20434 1.21032 1.19707 1.21244 0.98228 0.97148 0.99739 1.20782 0.96172 0.95972 0.91361 0.91008 0.91693 0.91100 0.92278 0.91575 0.91527 0.77580 0.90111 0.90810 0.90643 0.89954 0.75182 0.85315 0.85376 0.94723 0.94691 0.92630 0.85329 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.49 37.16 0.32 -0.76 16 2 C 0.13 0.87 1.09 -90.62 -0.10 0.77 16 3 C -0.18 -0.93 8.82 37.16 0.33 -0.61 16 4 O -0.56 -4.62 12.31 -35.23 -0.43 -5.05 16 5 C -0.15 -0.97 4.60 -26.73 -0.12 -1.10 16 6 C 0.12 1.05 5.72 -4.04 -0.02 1.02 16 7 N -1.12 -10.78 6.00 -10.61 -0.06 -10.85 16 8 S 2.70 37.17 5.74 -107.50 -0.62 36.56 16 9 O -0.96 -15.55 16.75 -57.17 -0.96 -16.51 16 10 O -0.97 -15.53 17.28 -57.17 -0.99 -16.52 16 11 C -0.70 -11.14 5.95 -39.58 -0.24 -11.38 16 12 C -0.02 -0.37 9.52 -39.58 -0.38 -0.74 16 13 C -0.15 -2.74 9.70 -39.58 -0.38 -3.12 16 14 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 15 C 0.04 0.97 5.10 -29.03 -0.15 0.82 16 16 C -0.52 -14.10 9.09 -34.44 -0.31 -14.42 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 20 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.14 -2.71 9.70 -39.59 -0.38 -3.09 16 25 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.58 6.43 -51.92 -0.33 0.25 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.38 1.92 9.05 45.56 0.41 2.33 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.72 7.68 -51.93 -0.40 0.33 16 36 H 0.08 0.79 6.04 -51.93 -0.31 0.47 16 37 H 0.41 2.99 8.65 -34.47 -0.30 2.69 16 38 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 39 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 40 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 44 H 0.13 1.83 7.62 -52.48 -0.40 1.43 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -34.09 378.47 -10.01 -44.09 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.92 Total: 3.00 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: -2.45 Total: -31.75 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.67 Total: -35.74 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -2.38 Total: -38.08 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 37.17 SS G_CDS: -0.62 Total: 36.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.09 -10.01 -44.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885117864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.164 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds