Wall clock time and date at job start Tue Mar 31 2020 14:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47211 * 2 1 4 4 O 1.42898 * 109.47421 * 239.99502 * 2 1 3 5 5 C 1.53003 * 109.47136 * 119.99797 * 2 1 3 6 6 C 1.53002 * 109.47224 * 60.00222 * 5 2 1 7 7 N 1.46500 * 109.47122 * 180.02562 * 6 5 2 8 8 S 1.65599 * 119.99879 * 164.99639 * 7 6 5 9 9 O 1.42101 * 106.40542 * 311.46159 * 8 7 6 10 10 O 1.42098 * 106.40229 * 178.53922 * 8 7 6 11 11 C 1.76203 * 107.21703 * 65.00041 * 8 7 6 12 12 C 1.38233 * 120.00082 * 90.00045 * 11 8 7 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38232 * 119.99735 * 359.49690 * 24 14 13 26 26 H 1.09004 * 109.47256 * 300.00209 * 1 2 3 27 27 H 1.08999 * 109.47255 * 60.00342 * 1 2 3 28 28 H 1.09008 * 109.47227 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47098 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46732 * 299.99978 * 3 2 1 31 31 H 1.08998 * 109.46755 * 59.99772 * 3 2 1 32 32 H 0.96699 * 114.00287 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.47043 * 300.00124 * 5 2 1 34 34 H 1.09003 * 109.47217 * 179.97438 * 5 2 1 35 35 H 1.08995 * 109.47527 * 59.99456 * 6 5 2 36 36 H 1.09003 * 109.46770 * 299.99963 * 6 5 2 37 37 H 0.96990 * 120.00143 * 345.00111 * 7 6 5 38 38 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 39 39 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 41 41 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 42 42 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 44 44 H 1.08008 * 119.99912 * 180.25278 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.5301 -2.1638 1.2493 7 7 2.0179 -2.8541 2.4458 8 16 1.3376 -4.2916 2.9076 9 8 -0.0697 -4.0958 2.8829 10 8 2.0431 -4.7157 4.0659 11 6 1.6984 -5.4682 1.6466 12 6 2.8518 -6.2267 1.7186 13 6 3.1346 -7.1502 0.7296 14 6 2.2643 -7.3148 -0.3316 15 6 2.5729 -8.3212 -1.4101 16 6 1.9745 -9.6538 -1.0398 17 1 1.4259 -9.7613 -0.1157 18 6 2.1326 -10.7372 -1.8777 19 7 2.8009 -10.6064 -3.0028 20 14 1.3975 -12.3910 -1.4149 21 1 0.0182 -12.4885 -1.9564 22 1 2.2310 -13.4800 -1.9846 23 1 1.3589 -12.5191 0.0640 24 6 1.1137 -6.5523 -0.4066 25 6 0.8283 -5.6326 0.5851 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 2.9704 -0.7116 -1.2330 33 1 1.6766 -0.2073 2.1393 34 1 3.1300 -0.7216 1.2491 35 1 1.8933 -2.6776 0.3594 36 1 0.4400 -2.1637 1.2493 37 1 2.7393 -2.4693 2.9676 38 1 3.5321 -6.0978 2.5475 39 1 4.0360 -7.7425 0.7857 40 1 3.6532 -8.4239 -1.5128 41 1 2.1486 -7.9824 -2.3553 42 1 2.9125 -11.3687 -3.5921 43 1 0.4359 -6.6778 -1.2380 44 1 -0.0727 -5.0397 0.5286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885117864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:39 Heat of formation + Delta-G solvation = -149.536726 kcal Electronic energy + Delta-G solvation = -25607.380300 eV Core-core repulsion = 21842.672375 eV Total energy + Delta-G solvation = -3764.707924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23707 -39.61403 -38.34247 -36.98076 -36.30868 -35.59934 -33.43253 -33.31598 -31.96356 -29.59102 -29.25112 -28.22144 -25.59875 -24.19661 -23.68357 -22.48103 -21.22613 -20.49826 -19.06335 -18.60992 -18.43981 -17.41818 -17.11456 -16.86658 -16.44098 -16.33492 -15.98170 -15.72032 -15.32676 -15.12659 -14.96940 -14.62913 -14.45905 -13.93728 -13.75081 -13.42155 -13.41637 -13.39702 -13.24812 -13.16179 -13.07274 -13.01364 -12.68739 -12.66055 -12.62827 -12.37438 -12.29684 -12.09940 -12.04301 -11.68034 -11.49111 -11.41954 -10.81027 -10.66001 -10.42894 -9.96451 -9.95142 -8.27673 -6.40508 -0.62051 -0.06456 0.39560 1.38011 1.38075 1.49742 2.01415 2.34336 2.55962 2.82406 3.04918 3.29459 3.42373 3.80784 3.85379 3.90181 3.97117 4.07452 4.15710 4.27750 4.33091 4.46265 4.47384 4.62395 4.71032 4.80906 4.81803 4.90631 4.92062 4.98260 5.07670 5.10161 5.16644 5.23871 5.25421 5.25948 5.33245 5.35078 5.44026 5.66510 5.85908 5.92128 6.09374 6.12565 6.71257 6.96146 7.28607 8.82491 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002919 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.012560 B = 9591.629188 C =10673.198346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 C -0.173 4.173 4 O -0.579 6.579 5 C -0.146 4.146 6 C 0.108 3.892 7 N -1.102 6.102 8 S 2.726 3.274 9 O -0.984 6.984 10 O -0.985 6.985 11 C -0.701 4.701 12 C -0.018 4.018 13 C -0.156 4.156 14 C -0.003 4.003 15 C 0.048 3.952 16 C -0.534 4.534 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.155 4.155 25 C -0.020 4.020 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.388 0.612 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.429 0.571 38 H 0.157 0.843 39 H 0.130 0.870 40 H 0.014 0.986 41 H 0.013 0.987 42 H 0.268 0.732 43 H 0.128 0.872 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.168 25.050 9.087 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.084 3.916 3 C -0.231 4.231 4 O -0.388 6.388 5 C -0.185 4.185 6 C -0.018 4.018 7 N -0.865 5.865 8 S 2.816 3.184 9 O -0.974 6.974 10 O -0.975 6.975 11 C -0.788 4.788 12 C -0.038 4.038 13 C -0.174 4.174 14 C -0.003 4.003 15 C 0.011 3.989 16 C -0.572 4.572 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.788 3.212 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.174 4.174 25 C -0.039 4.039 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.238 0.762 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.267 0.733 38 H 0.174 0.826 39 H 0.148 0.852 40 H 0.032 0.968 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.030 24.663 9.480 26.442 hybrid contribution 0.969 -1.372 -0.728 1.831 sum -0.061 23.291 8.752 24.881 Atomic orbital electron populations 1.21952 0.93210 1.02800 1.03134 1.21247 0.94839 0.91448 0.84071 1.22436 1.02128 0.95335 1.03157 1.86581 1.28098 1.79683 1.44409 1.22466 1.02764 0.93497 0.99744 1.21507 0.99811 0.94417 0.86028 1.55190 1.53381 1.38216 1.39727 1.00721 0.72842 0.72517 0.72290 1.93534 1.31286 1.85697 1.86869 1.93539 1.74779 1.82133 1.47092 1.30805 1.06091 1.22327 1.19555 1.21029 0.94124 0.91770 0.96830 1.21310 1.01026 1.00130 0.94976 1.20813 0.92925 0.91527 0.95053 1.18264 0.96505 0.92058 0.92028 1.21287 1.34919 0.94717 1.06253 0.92842 1.25863 0.95404 1.02944 0.94724 1.70052 1.41735 1.32570 1.12112 0.85459 0.78521 0.78492 0.78690 1.19662 1.20247 1.19247 1.21294 0.97702 0.97673 1.00694 1.21016 0.97020 0.95192 0.90667 0.89483 0.92257 0.92470 0.91212 0.92303 0.90435 0.76210 0.88698 0.89052 0.91284 0.90456 0.73315 0.82570 0.85209 0.96801 0.96891 0.92352 0.85361 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.49 71.98 0.61 -1.43 16 2 C 0.13 1.45 1.09 -10.79 -0.01 1.44 16 3 C -0.17 -1.40 8.82 71.98 0.63 -0.77 16 4 O -0.58 -8.89 12.31 -148.98 -1.83 -10.72 16 5 C -0.15 -1.42 4.60 30.60 0.14 -1.28 16 6 C 0.11 1.68 5.72 86.38 0.49 2.18 16 7 N -1.10 -17.89 6.00 -187.49 -1.12 -19.01 16 8 S 2.73 68.33 5.74 -56.49 -0.32 68.01 16 9 O -0.98 -29.47 16.75 -128.00 -2.14 -31.62 16 10 O -0.99 -28.95 17.28 -128.00 -2.21 -31.16 16 11 C -0.70 -20.96 5.95 22.27 0.13 -20.83 16 12 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 13 C -0.16 -5.85 9.70 22.27 0.22 -5.64 16 14 C 0.00 -0.12 5.07 -19.87 -0.10 -0.22 16 15 C 0.05 2.50 5.10 29.10 0.15 2.65 16 16 C -0.53 -30.01 9.09 25.60 0.23 -29.77 16 17 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 18 C 0.01 0.54 5.46 84.65 0.46 1.00 16 19 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 20 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 C -0.15 -5.88 9.70 22.27 0.22 -5.66 16 25 C -0.02 -0.63 9.52 22.27 0.21 -0.42 16 26 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.90 6.43 -2.38 -0.02 0.89 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.39 3.39 9.05 -74.06 -0.67 2.72 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 1.20 7.68 -2.39 -0.02 1.18 16 36 H 0.08 1.32 6.04 -2.39 -0.01 1.31 16 37 H 0.43 4.63 8.65 -96.76 -0.84 3.79 16 38 H 0.16 4.01 7.62 -2.91 -0.02 3.98 16 39 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 40 H 0.01 0.75 8.09 -2.39 -0.02 0.73 16 41 H 0.01 0.70 8.08 -2.38 -0.02 0.68 16 42 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 43 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 44 H 0.15 4.08 7.62 -2.91 -0.02 4.06 16 Total: -1.00 -73.71 378.47 -2.22 -75.93 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -0.49 Total: 16.01 kcal Atomic # 6 Polarization: -62.71 SS G_CDS: 3.60 Total: -59.11 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -0.84 Total: -73.27 kcal Atomic # 8 Polarization: -67.31 SS G_CDS: -6.19 Total: -73.50 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 68.33 SS G_CDS: -0.32 Total: 68.01 kcal Total: -73.71 -2.22 -75.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885117864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.604 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds