Wall clock time and date at job start Tue Mar 31 2020 15:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47025 * 2 1 4 4 H 1.09001 * 109.47544 * 305.08797 * 3 2 1 5 5 C 1.53001 * 109.47042 * 185.08538 * 3 2 1 6 6 N 1.46499 * 109.47428 * 179.97438 * 5 3 2 7 7 S 1.65597 * 120.00148 * 165.00137 * 6 5 3 8 8 O 1.42106 * 106.40096 * 178.54138 * 7 6 5 9 9 O 1.42097 * 106.40366 * 311.46377 * 7 6 5 10 10 C 1.76199 * 107.21768 * 65.00277 * 7 6 5 11 11 C 1.38231 * 119.99988 * 269.72414 * 10 7 6 12 12 C 1.38232 * 120.00284 * 179.76454 * 11 10 7 13 13 C 1.38242 * 119.99806 * 0.49182 * 12 11 10 14 14 C 1.50695 * 120.00135 * 179.76845 * 13 12 11 15 15 C 1.50698 * 109.46898 * 270.02022 * 14 13 12 16 16 H 1.07998 * 120.00534 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99880 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99725 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99991 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.47111 * 90.00439 * 19 17 15 21 21 H 1.48500 * 109.46994 * 209.99750 * 19 17 15 22 22 H 1.48498 * 109.47370 * 329.99952 * 19 17 15 23 23 C 1.38230 * 119.99795 * 359.78356 * 13 12 11 24 24 C 1.38233 * 120.00310 * 90.00207 * 10 7 6 25 25 O 1.42906 * 109.47092 * 65.08922 * 3 2 1 26 26 C 1.42895 * 113.99810 * 259.15022 * 25 3 2 27 27 H 1.08997 * 109.47517 * 174.20860 * 1 2 3 28 28 H 1.09000 * 109.46522 * 294.20386 * 1 2 3 29 29 H 1.09000 * 109.47283 * 54.20135 * 1 2 3 30 30 H 1.09004 * 109.46530 * 240.00014 * 2 1 3 31 31 H 1.08993 * 109.47302 * 120.00281 * 2 1 3 32 32 H 1.08992 * 109.47279 * 300.00427 * 5 3 2 33 33 H 1.09008 * 109.46797 * 60.00350 * 5 3 2 34 34 H 0.97001 * 119.99912 * 345.00224 * 6 5 3 35 35 H 1.08007 * 119.99962 * 0.02562 * 11 10 7 36 36 H 1.08002 * 120.00607 * 180.25534 * 12 11 10 37 37 H 1.09005 * 109.47433 * 30.01681 * 14 13 12 38 38 H 1.09000 * 109.47533 * 150.01824 * 14 13 12 39 39 H 0.97005 * 119.99581 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.00336 * 179.97438 * 23 13 12 41 41 H 1.08010 * 119.99685 * 359.97438 * 24 10 7 42 42 H 1.09001 * 109.47363 * 305.64725 * 26 25 3 43 43 H 1.09000 * 109.47155 * 65.64546 * 26 25 3 44 44 H 1.09004 * 109.47027 * 185.64284 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9820 -0.8409 5 6 3.5647 1.4444 -0.1279 6 7 4.0530 2.8256 -0.1285 7 16 5.6609 3.1354 0.1183 8 8 5.8167 4.5449 0.0259 9 8 6.0434 2.3845 1.2624 10 6 6.5399 2.4474 -1.2451 11 6 6.9982 1.1446 -1.1854 12 6 7.6835 0.6032 -2.2568 13 6 7.9194 1.3679 -3.3840 14 6 8.6711 0.7794 -4.5500 15 6 10.1463 1.0334 -4.3764 16 1 10.5038 1.5679 -3.5087 17 6 11.0396 0.5843 -5.3258 18 7 12.3271 0.8064 -5.1745 19 14 10.4213 -0.3396 -6.8270 20 1 10.1301 0.6258 -7.9172 21 1 11.4600 -1.2993 -7.2801 22 1 9.1824 -1.0798 -6.4771 23 6 7.4661 2.6725 -3.4415 24 6 6.7762 3.2122 -2.3720 25 8 1.6638 2.0807 1.2220 26 6 0.5242 2.9348 1.1046 27 1 -0.3634 -1.0224 -0.1037 28 1 -0.3632 0.4213 0.9374 29 1 -0.3634 0.6011 -0.8335 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 4.0005 0.9049 0.7130 33 1 3.8517 0.9575 -1.0600 34 1 3.4345 3.5586 -0.2734 35 1 6.8171 0.5483 -0.3032 36 1 8.0380 -0.4160 -2.2119 37 1 8.4901 -0.2947 -4.5943 38 1 8.3288 1.2438 -5.4748 39 1 12.9555 0.4908 -5.8427 40 1 7.6508 3.2701 -4.3219 41 1 6.4217 4.2314 -2.4171 42 1 0.6951 3.6617 0.3105 43 1 -0.3553 2.3365 0.8664 44 1 0.3633 3.4577 2.0475 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885196958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:43 Heat of formation + Delta-G solvation = -135.001864 kcal Electronic energy + Delta-G solvation = -25567.145323 eV Core-core repulsion = 21803.067678 eV Total energy + Delta-G solvation = -3764.077645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.25429 -39.69855 -38.34282 -36.97369 -35.98725 -35.53189 -33.97592 -33.54350 -31.96451 -29.70450 -29.61321 -26.98583 -25.28000 -24.20301 -23.71773 -22.35618 -22.14943 -20.48031 -19.03947 -19.02217 -18.47822 -17.81495 -17.39171 -16.75673 -16.49761 -16.38708 -15.98224 -15.77613 -15.34839 -15.13402 -14.64728 -14.59684 -14.52365 -14.45226 -14.16295 -13.95458 -13.61716 -13.44323 -13.41282 -13.23660 -13.17357 -13.06836 -12.56720 -12.54912 -12.52391 -12.14455 -12.06773 -11.93363 -11.89517 -11.71827 -11.57257 -11.50709 -10.82493 -10.61464 -10.29775 -9.96022 -9.93473 -8.33356 -6.40718 -0.63573 -0.08160 0.39687 1.36589 1.38438 1.49879 2.02699 2.32929 2.54449 2.77642 2.90220 3.01122 3.31271 3.78060 3.88084 3.95515 3.99413 4.08648 4.13868 4.39940 4.43335 4.46928 4.47743 4.52438 4.59406 4.65477 4.78525 4.79991 4.84322 4.86300 4.91289 5.00452 5.06430 5.10425 5.16400 5.17945 5.27248 5.29295 5.44012 5.49727 5.78141 5.94010 6.06738 6.19276 6.33910 6.66083 7.23201 8.83120 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.002823 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.878829 B = 9915.202302 C =10891.727499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C 0.084 3.916 4 H 0.088 0.912 5 C 0.104 3.896 6 N -1.098 6.098 7 S 2.725 3.275 8 O -0.988 6.988 9 O -0.985 6.985 10 C -0.698 4.698 11 C -0.022 4.022 12 C -0.152 4.152 13 C -0.002 4.002 14 C 0.012 3.988 15 C -0.526 4.526 16 H 0.025 0.975 17 C 0.008 3.992 18 N -0.948 5.948 19 Si 0.954 3.046 20 H -0.264 1.264 21 H -0.285 1.285 22 H -0.240 1.240 23 C -0.154 4.154 24 C -0.021 4.021 25 O -0.399 6.399 26 C 0.017 3.983 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.426 0.574 35 H 0.156 0.844 36 H 0.136 0.864 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.269 0.731 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.628 0.137 7.878 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.183 4.183 3 C 0.024 3.976 4 H 0.106 0.894 5 C -0.022 4.022 6 N -0.861 5.861 7 S 2.816 3.184 8 O -0.978 6.978 9 O -0.975 6.975 10 C -0.785 4.785 11 C -0.041 4.041 12 C -0.171 4.171 13 C -0.002 4.002 14 C -0.025 4.025 15 C -0.564 4.564 16 H 0.044 0.956 17 C -0.190 4.190 18 N -0.588 5.588 19 Si 0.777 3.223 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.163 1.163 23 C -0.173 4.173 24 C -0.040 4.040 25 O -0.319 6.319 26 C -0.079 4.079 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.263 0.737 35 H 0.173 0.827 36 H 0.153 0.847 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.152 0.848 41 H 0.172 0.828 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -27.876 0.375 8.727 29.212 hybrid contribution 0.491 -0.214 -1.514 1.606 sum -27.385 0.161 7.213 28.320 Atomic orbital electron populations 1.21810 0.94796 1.02447 1.01884 1.21988 0.97212 0.95389 1.03674 1.22482 0.92590 0.94698 0.87807 0.89436 1.21811 0.95393 0.81389 1.03602 1.55035 1.25428 1.15031 1.90620 1.00726 0.72564 0.72061 0.73079 1.93535 1.85959 1.30851 1.87464 1.93535 1.82720 1.73607 1.47661 1.30754 1.22424 1.06072 1.19248 1.21060 0.92418 0.92887 0.97760 1.21358 1.00747 1.01449 0.93536 1.20598 0.89650 0.94175 0.95802 1.18826 0.93182 0.97317 0.93196 1.21071 0.90824 1.36916 1.07603 0.95615 1.26030 0.94635 0.96511 1.01776 1.70065 1.03318 1.48069 1.37317 0.85600 0.79175 0.78969 0.78574 1.18920 1.21056 1.16304 1.21357 1.00270 0.95299 1.00382 1.21034 0.93294 0.99103 0.90582 1.87950 1.48524 1.62734 1.32644 1.23114 0.88130 0.93482 1.03152 0.91942 0.92729 0.92079 0.89316 0.91365 0.90074 0.88413 0.73709 0.82661 0.84662 0.93954 0.94203 0.92238 0.84794 0.82793 0.92865 0.92635 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.86 71.98 0.64 -0.71 16 2 C -0.14 -1.51 5.64 30.60 0.17 -1.34 16 3 C 0.08 1.02 2.36 30.59 0.07 1.09 16 4 H 0.09 0.76 7.60 -2.39 -0.02 0.74 16 5 C 0.10 1.56 5.91 86.38 0.51 2.07 16 6 N -1.10 -19.09 5.86 -187.49 -1.10 -20.19 16 7 S 2.73 70.25 5.74 -56.49 -0.32 69.92 16 8 O -0.99 -30.28 17.28 -128.00 -2.21 -32.49 16 9 O -0.99 -30.88 16.75 -128.00 -2.14 -33.03 16 10 C -0.70 -20.07 5.95 22.27 0.13 -19.94 16 11 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 12 C -0.15 -5.28 9.70 22.27 0.22 -5.06 16 13 C 0.00 -0.08 5.07 -19.87 -0.10 -0.18 16 14 C 0.01 0.53 4.17 29.10 0.12 0.65 16 15 C -0.53 -29.63 9.65 25.60 0.25 -29.38 16 16 H 0.03 1.64 7.98 -2.91 -0.02 1.62 16 17 C 0.01 0.45 5.47 84.66 0.46 0.91 16 18 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 19 Si 0.95 42.01 27.47 68.60 1.88 43.89 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 23 C -0.15 -5.41 9.70 22.27 0.22 -5.19 16 24 C -0.02 -0.63 9.52 22.27 0.21 -0.42 16 25 O -0.40 -6.28 10.00 -148.98 -1.49 -7.77 16 26 C 0.02 0.17 10.48 113.37 1.19 1.36 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.54 6.58 -2.39 -0.02 0.52 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.38 7.75 -2.39 -0.02 1.36 16 33 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.43 5.65 8.65 -96.75 -0.84 4.81 16 35 H 0.16 3.80 7.61 -2.91 -0.02 3.78 16 36 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.04 1.79 7.14 -2.38 -0.02 1.77 16 38 H 0.04 1.67 7.51 -2.39 -0.02 1.65 16 39 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 40 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.15 3.85 7.62 -2.91 -0.02 3.83 16 42 H 0.05 0.40 7.99 -2.39 -0.02 0.38 16 43 H 0.06 0.43 6.00 -2.39 -0.01 0.41 16 44 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -76.21 375.54 -0.68 -76.89 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.11 Total: 17.64 kcal Atomic # 6 Polarization: -60.88 SS G_CDS: 4.30 Total: -56.57 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -0.80 Total: -78.48 kcal Atomic # 8 Polarization: -67.44 SS G_CDS: -5.84 Total: -73.29 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.88 Total: 43.89 kcal Atomic # 16 Polarization: 70.25 SS G_CDS: -0.32 Total: 69.92 kcal Total: -76.21 -0.68 -76.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885196958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.112 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds