Wall clock time and date at job start Tue Mar 31 2020 15:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 H 1.09005 * 109.47128 * 55.00689 * 3 2 1 5 5 C 1.53006 * 109.47058 * 175.00082 * 3 2 1 6 6 O 1.42902 * 109.46839 * 55.21321 * 5 3 2 7 7 N 1.46499 * 109.47714 * 295.00347 * 3 2 1 8 8 C 1.46508 * 119.99559 * 306.36899 * 7 3 2 9 9 S 1.65592 * 120.00388 * 126.36241 * 7 3 2 10 10 O 1.42098 * 106.40667 * 203.54516 * 9 7 3 11 11 O 1.42102 * 106.40256 * 336.46632 * 9 7 3 12 12 C 1.76203 * 107.21904 * 90.00149 * 9 7 3 13 13 C 1.38234 * 119.99780 * 269.73003 * 12 9 7 14 14 C 1.38241 * 119.99490 * 179.76318 * 13 12 9 15 15 C 1.38235 * 120.00276 * 0.48563 * 14 13 12 16 16 C 1.50690 * 120.00347 * 179.76778 * 15 14 13 17 17 C 1.50700 * 109.47355 * 270.02277 * 16 15 14 18 18 H 1.08000 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00199 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99670 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47334 * 59.99997 * 21 19 17 23 23 H 1.48496 * 109.47411 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.46976 * 300.00207 * 21 19 17 25 25 C 1.38237 * 119.99586 * 359.78695 * 15 14 13 26 26 C 1.38229 * 119.99814 * 89.99974 * 12 9 7 27 27 H 1.08996 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47556 * 59.99511 * 1 2 3 29 29 H 1.09004 * 109.46856 * 299.99968 * 1 2 3 30 30 H 1.08996 * 109.47175 * 120.00107 * 2 1 3 31 31 H 1.08994 * 109.46919 * 240.00596 * 2 1 3 32 32 H 1.09000 * 109.46908 * 175.21454 * 5 3 2 33 33 H 1.08999 * 109.46817 * 295.21066 * 5 3 2 34 34 H 0.96702 * 113.99846 * 180.02562 * 6 5 3 35 35 H 1.08992 * 109.46980 * 95.24736 * 8 7 3 36 36 H 1.09001 * 109.46773 * 215.24844 * 8 7 3 37 37 H 1.08996 * 109.46958 * 335.24575 * 8 7 3 38 38 H 1.08003 * 120.00535 * 359.97438 * 13 12 9 39 39 H 1.07996 * 120.00059 * 180.25390 * 14 13 12 40 40 H 1.09005 * 109.47215 * 30.02392 * 16 15 14 41 41 H 1.09003 * 109.47655 * 150.02047 * 16 15 14 42 42 H 0.97001 * 119.99544 * 179.97438 * 20 19 17 43 43 H 1.08001 * 119.99644 * 179.97438 * 25 15 14 44 44 H 1.08003 * 120.00290 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1257 6 8 4.1296 0.6445 -0.9151 7 7 1.6524 2.0976 -1.2517 8 6 1.9952 1.4831 -2.5367 9 16 0.8267 3.5325 -1.2142 10 8 0.1327 3.6287 -2.4505 11 8 0.1769 3.5887 0.0483 12 6 2.0253 4.8241 -1.2147 13 6 2.5123 5.3154 -0.0179 14 6 3.4563 6.3254 -0.0184 15 6 3.9056 6.8509 -1.2154 16 6 4.9307 7.9555 -1.2158 17 6 4.2314 9.2899 -1.1821 18 1 3.1524 9.3338 -1.1627 19 6 4.9689 10.4549 -1.1759 20 7 6.2827 10.4014 -1.2000 21 14 4.1020 12.1090 -1.1348 22 1 3.2727 12.2029 0.0936 23 1 5.1120 13.1975 -1.1351 24 1 3.2317 12.2416 -2.3308 25 6 3.4143 6.3634 -2.4120 26 6 2.4743 5.3499 -2.4116 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 3.9352 2.4660 0.0404 33 1 3.8500 1.0343 1.0945 34 1 5.0954 0.5999 -0.8969 35 1 1.1520 0.8916 -2.8930 36 1 2.2245 2.2631 -3.2628 37 1 2.8643 0.8375 -2.4104 38 1 2.1580 4.9079 0.9175 39 1 3.8399 6.7065 0.9165 40 1 5.5702 7.8581 -0.3384 41 1 5.5387 7.8866 -2.1179 42 1 6.8016 11.2210 -1.1961 43 1 3.7651 6.7743 -3.3472 44 1 2.0902 4.9693 -3.3465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885212979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:50 Heat of formation + Delta-G solvation = -109.429698 kcal Electronic energy + Delta-G solvation = -26526.947630 eV Core-core repulsion = 22763.978877 eV Total energy + Delta-G solvation = -3762.968753 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.82243 -38.68337 -37.16378 -35.82977 -35.65796 -33.69389 -32.62561 -31.56528 -30.59283 -29.22717 -27.43539 -26.04879 -23.78927 -23.65026 -22.35402 -21.06977 -20.66990 -19.00151 -18.24715 -17.52316 -17.05376 -16.46160 -16.15481 -15.46687 -15.19799 -15.01238 -14.50779 -14.45671 -14.38775 -13.85779 -13.70219 -13.27923 -13.09985 -12.96065 -12.87609 -12.76831 -12.37627 -12.24066 -12.04113 -11.93161 -11.71527 -11.66297 -11.50091 -11.34403 -11.15218 -11.01533 -10.92035 -10.91355 -10.51645 -10.49305 -10.13174 -9.77488 -9.67227 -9.07644 -8.60445 -8.54983 -8.38562 -6.18641 -4.23758 0.48769 1.32643 1.77855 2.99740 3.25139 3.29281 3.32872 3.79099 3.97425 4.09219 4.35816 4.37192 4.43753 4.74440 4.92842 4.94660 5.12337 5.14379 5.19942 5.22349 5.27454 5.36899 5.47551 5.56007 5.69514 5.70606 5.74777 5.79751 5.84889 5.89797 6.05867 6.07177 6.19897 6.23819 6.31628 6.45500 6.56326 6.82366 6.88993 7.27287 7.36928 7.41567 7.57115 7.76325 8.11700 8.80789 9.41268 10.91369 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.003111 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.277123 B = 8998.514305 C = 9459.154219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C 0.147 3.853 4 H 0.112 0.888 5 C 0.063 3.937 6 O -0.563 6.563 7 N -0.990 5.990 8 C 0.088 3.912 9 S 2.690 3.310 10 O -0.962 6.962 11 O -0.964 6.964 12 C -0.703 4.703 13 C -0.026 4.026 14 C -0.146 4.146 15 C 0.026 3.974 16 C 0.040 3.960 17 C -0.519 4.519 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.145 4.145 26 C -0.023 4.023 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.376 0.624 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.265 0.735 43 H 0.128 0.872 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -21.758 1.881 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C 0.041 3.959 4 H 0.130 0.870 5 C -0.017 4.017 6 O -0.369 6.369 7 N -0.827 5.827 8 C -0.057 4.057 9 S 2.784 3.216 10 O -0.952 6.952 11 O -0.955 6.955 12 C -0.793 4.793 13 C -0.045 4.045 14 C -0.164 4.164 15 C 0.025 3.975 16 C 0.004 3.996 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.164 4.164 26 C -0.042 4.042 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.224 0.776 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.164 -21.643 1.721 22.570 hybrid contribution 0.959 1.566 0.167 1.844 sum -5.205 -20.077 1.888 20.827 Atomic orbital electron populations 1.21816 0.95694 1.01587 1.02337 1.21709 0.96026 0.95153 1.03150 1.21160 0.92852 0.95479 0.86415 0.87020 1.22688 0.93723 0.95007 0.90264 1.86412 1.25305 1.72534 1.52690 1.57445 1.75433 1.38097 1.11743 1.21660 1.02235 0.99332 0.82462 1.01875 0.73897 0.72498 0.73327 1.93549 1.70371 1.86284 1.45017 1.93534 1.72286 1.86521 1.43136 1.30438 1.25186 1.23746 0.99888 1.20748 0.93363 0.94779 0.95628 1.21237 0.98811 0.97553 0.98842 1.21105 0.92885 0.91448 0.92040 1.18524 0.92047 0.90099 0.98978 1.20938 0.93142 0.89469 1.52132 0.92340 1.25000 0.94879 0.99444 0.94776 1.69936 1.04807 1.28529 1.49734 0.86533 0.79226 0.82685 0.78917 1.20020 1.21091 1.20019 1.21248 0.98611 0.97602 0.98913 1.20767 0.93377 0.94344 0.95727 0.92600 0.92883 0.92240 0.91099 0.90378 0.92705 0.92642 0.77626 0.93109 0.91903 0.87890 0.85428 0.85391 0.94766 0.94750 0.92562 0.85368 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.80 37.16 0.36 -1.05 16 2 C -0.12 -1.01 5.00 -26.73 -0.13 -1.14 16 3 C 0.15 1.40 2.58 -67.93 -0.18 1.23 16 4 H 0.11 1.08 6.83 -51.93 -0.35 0.72 16 5 C 0.06 0.50 6.84 37.16 0.25 0.76 16 6 O -0.56 -4.19 10.01 -35.23 -0.35 -4.54 16 7 N -0.99 -11.15 2.53 -114.60 -0.29 -11.44 16 8 C 0.09 0.88 8.98 59.85 0.54 1.42 16 9 S 2.69 39.39 5.67 -107.50 -0.61 38.78 16 10 O -0.96 -16.31 16.46 -57.17 -0.94 -17.25 16 11 O -0.96 -15.57 15.79 -57.17 -0.90 -16.47 16 12 C -0.70 -11.30 5.97 -39.59 -0.24 -11.54 16 13 C -0.03 -0.42 9.52 -39.58 -0.38 -0.79 16 14 C -0.15 -2.68 9.70 -39.58 -0.38 -3.06 16 15 C 0.03 0.53 5.07 -104.63 -0.53 0.00 16 16 C 0.04 0.98 5.10 -29.04 -0.15 0.83 16 17 C -0.52 -14.07 9.09 -34.44 -0.31 -14.38 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 21 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.14 -2.71 9.70 -39.58 -0.38 -3.09 16 26 C -0.02 -0.38 9.52 -39.59 -0.38 -0.75 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.54 7.75 -51.93 -0.40 0.14 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.66 6.76 -51.93 -0.35 0.31 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.38 1.51 9.12 45.56 0.42 1.93 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.63 7.98 -51.93 -0.41 0.22 16 37 H 0.10 0.93 4.94 -51.93 -0.26 0.68 16 38 H 0.13 1.75 7.61 -52.48 -0.40 1.35 16 39 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 44 H 0.13 1.86 7.62 -52.48 -0.40 1.46 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -32.82 372.75 -9.69 -42.50 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.93 Total: 1.44 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -2.00 Total: -30.00 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.45 Total: -36.17 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -2.20 Total: -38.26 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 39.39 SS G_CDS: -0.61 Total: 38.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.82 -9.69 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885212979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.925 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds