Wall clock time and date at job start Tue Mar 31 2020 15:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 H 1.09005 * 109.47128 * 55.00689 * 3 2 1 5 5 C 1.53006 * 109.47058 * 175.00082 * 3 2 1 6 6 O 1.42902 * 109.46839 * 55.21321 * 5 3 2 7 7 N 1.46499 * 109.47714 * 295.00347 * 3 2 1 8 8 C 1.46508 * 119.99559 * 306.36899 * 7 3 2 9 9 S 1.65592 * 120.00388 * 126.36241 * 7 3 2 10 10 O 1.42098 * 106.40667 * 203.54516 * 9 7 3 11 11 O 1.42102 * 106.40256 * 336.46632 * 9 7 3 12 12 C 1.76203 * 107.21904 * 90.00149 * 9 7 3 13 13 C 1.38234 * 119.99780 * 269.73003 * 12 9 7 14 14 C 1.38241 * 119.99490 * 179.76318 * 13 12 9 15 15 C 1.38235 * 120.00276 * 0.48563 * 14 13 12 16 16 C 1.50690 * 120.00347 * 179.76778 * 15 14 13 17 17 C 1.50700 * 109.47355 * 270.02277 * 16 15 14 18 18 H 1.08000 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00199 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99670 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47334 * 59.99997 * 21 19 17 23 23 H 1.48496 * 109.47411 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.46976 * 300.00207 * 21 19 17 25 25 C 1.38237 * 119.99586 * 359.78695 * 15 14 13 26 26 C 1.38229 * 119.99814 * 89.99974 * 12 9 7 27 27 H 1.08996 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47556 * 59.99511 * 1 2 3 29 29 H 1.09004 * 109.46856 * 299.99968 * 1 2 3 30 30 H 1.08996 * 109.47175 * 120.00107 * 2 1 3 31 31 H 1.08994 * 109.46919 * 240.00596 * 2 1 3 32 32 H 1.09000 * 109.46908 * 175.21454 * 5 3 2 33 33 H 1.08999 * 109.46817 * 295.21066 * 5 3 2 34 34 H 0.96702 * 113.99846 * 180.02562 * 6 5 3 35 35 H 1.08992 * 109.46980 * 95.24736 * 8 7 3 36 36 H 1.09001 * 109.46773 * 215.24844 * 8 7 3 37 37 H 1.08996 * 109.46958 * 335.24575 * 8 7 3 38 38 H 1.08003 * 120.00535 * 359.97438 * 13 12 9 39 39 H 1.07996 * 120.00059 * 180.25390 * 14 13 12 40 40 H 1.09005 * 109.47215 * 30.02392 * 16 15 14 41 41 H 1.09003 * 109.47655 * 150.02047 * 16 15 14 42 42 H 0.97001 * 119.99544 * 179.97438 * 20 19 17 43 43 H 1.08001 * 119.99644 * 179.97438 * 25 15 14 44 44 H 1.08003 * 120.00290 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1257 6 8 4.1296 0.6445 -0.9151 7 7 1.6524 2.0976 -1.2517 8 6 1.9952 1.4831 -2.5367 9 16 0.8267 3.5325 -1.2142 10 8 0.1327 3.6287 -2.4505 11 8 0.1769 3.5887 0.0483 12 6 2.0253 4.8241 -1.2147 13 6 2.5123 5.3154 -0.0179 14 6 3.4563 6.3254 -0.0184 15 6 3.9056 6.8509 -1.2154 16 6 4.9307 7.9555 -1.2158 17 6 4.2314 9.2899 -1.1821 18 1 3.1524 9.3338 -1.1627 19 6 4.9689 10.4549 -1.1759 20 7 6.2827 10.4014 -1.2000 21 14 4.1020 12.1090 -1.1348 22 1 3.2727 12.2029 0.0936 23 1 5.1120 13.1975 -1.1351 24 1 3.2317 12.2416 -2.3308 25 6 3.4143 6.3634 -2.4120 26 6 2.4743 5.3499 -2.4116 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 3.9352 2.4660 0.0404 33 1 3.8500 1.0343 1.0945 34 1 5.0954 0.5999 -0.8969 35 1 1.1520 0.8916 -2.8930 36 1 2.2245 2.2631 -3.2628 37 1 2.8643 0.8375 -2.4104 38 1 2.1580 4.9079 0.9175 39 1 3.8399 6.7065 0.9165 40 1 5.5702 7.8581 -0.3384 41 1 5.5387 7.8866 -2.1179 42 1 6.8016 11.2210 -1.1961 43 1 3.7651 6.7743 -3.3472 44 1 2.0902 4.9693 -3.3465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885212979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:49 Heat of formation + Delta-G solvation = -131.754410 kcal Electronic energy + Delta-G solvation = -26527.915702 eV Core-core repulsion = 22763.978877 eV Total energy + Delta-G solvation = -3763.936825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.25392 -39.40644 -38.39948 -37.00144 -36.38157 -35.61034 -33.42942 -33.28546 -31.98711 -29.91225 -29.24959 -26.86674 -25.60040 -24.36008 -23.74888 -22.50062 -21.63793 -20.00874 -19.24843 -18.70563 -18.53848 -17.82346 -17.20004 -16.88582 -16.35050 -16.12596 -15.96155 -15.67716 -15.24504 -15.13553 -14.64823 -14.53061 -14.47126 -14.02451 -13.94050 -13.72166 -13.57439 -13.41818 -13.40939 -13.34629 -13.21253 -12.99572 -12.68364 -12.66649 -12.46009 -12.20494 -12.06366 -12.02602 -11.84870 -11.70248 -11.67716 -11.40908 -10.72236 -10.65994 -10.02414 -9.98561 -9.86306 -8.28139 -6.40982 -0.68304 -0.08238 0.37327 1.38011 1.39430 1.47961 1.92470 2.34064 2.56204 2.76722 3.04525 3.21126 3.43692 3.67551 3.83739 3.94314 4.06222 4.13805 4.17556 4.27684 4.43370 4.45550 4.56834 4.61905 4.67955 4.79003 4.79318 4.83324 4.88834 5.00753 5.04382 5.08704 5.18723 5.22661 5.24643 5.31042 5.32504 5.35553 5.52173 5.65849 5.69537 5.84349 5.90407 6.08667 6.70521 6.98519 7.28142 8.81717 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.003111 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.277123 B = 8998.514305 C = 9459.154219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 C 0.136 3.864 4 H 0.111 0.889 5 C 0.066 3.934 6 O -0.572 6.572 7 N -0.980 5.980 8 C 0.082 3.918 9 S 2.708 3.292 10 O -0.984 6.984 11 O -0.978 6.978 12 C -0.701 4.701 13 C -0.019 4.019 14 C -0.152 4.152 15 C -0.003 4.003 16 C 0.050 3.950 17 C -0.536 4.536 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.154 4.154 26 C -0.021 4.021 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.392 0.608 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.116 0.884 38 H 0.156 0.844 39 H 0.132 0.868 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.268 0.732 43 H 0.129 0.871 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 -23.354 2.377 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.154 4.154 3 C 0.030 3.970 4 H 0.129 0.871 5 C -0.014 4.014 6 O -0.381 6.381 7 N -0.820 5.820 8 C -0.062 4.062 9 S 2.800 3.200 10 O -0.974 6.974 11 O -0.968 6.968 12 C -0.787 4.787 13 C -0.038 4.038 14 C -0.171 4.171 15 C -0.003 4.003 16 C 0.013 3.987 17 C -0.574 4.574 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.787 3.213 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.173 4.173 26 C -0.040 4.040 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.242 0.758 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.174 0.826 39 H 0.150 0.850 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.077 0.923 43 H 0.147 0.853 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.139 -23.229 2.218 24.402 hybrid contribution 1.253 1.885 0.016 2.264 sum -5.886 -21.343 2.234 22.252 Atomic orbital electron populations 1.21858 0.96400 1.02247 1.01303 1.21688 0.95328 0.94285 1.04127 1.21459 0.94184 0.96033 0.85303 0.87143 1.22606 0.92514 0.94730 0.91517 1.86344 1.26886 1.72235 1.52634 1.57231 1.75187 1.36445 1.13111 1.21839 1.03110 0.99495 0.81775 1.01334 0.73547 0.72667 0.72449 1.93518 1.71114 1.86820 1.45971 1.93512 1.72741 1.86906 1.43641 1.30872 1.24433 1.23844 0.99600 1.21008 0.92196 0.93633 0.96986 1.21306 0.99425 0.98176 0.98191 1.20812 0.93675 0.91941 0.93869 1.18247 0.92546 0.91029 0.96900 1.21270 0.93079 0.91108 1.51953 0.92867 1.25849 0.95535 1.03132 0.94304 1.70043 1.06165 1.29583 1.50593 0.85529 0.78281 0.78324 0.79137 1.19325 1.20324 1.19464 1.21292 0.99307 0.98352 0.98315 1.20983 0.92526 0.93439 0.97074 0.91178 0.94424 0.92746 0.89145 0.90289 0.93910 0.90342 0.75786 0.92436 0.91974 0.86588 0.82632 0.85015 0.96700 0.96895 0.92336 0.85322 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.80 71.98 0.71 -1.87 16 2 C -0.12 -1.59 5.00 30.60 0.15 -1.44 16 3 C 0.14 2.25 2.58 44.99 0.12 2.37 16 4 H 0.11 1.87 6.83 -2.38 -0.02 1.86 16 5 C 0.07 0.88 6.84 71.98 0.49 1.37 16 6 O -0.57 -6.91 10.01 -148.98 -1.49 -8.40 16 7 N -0.98 -20.11 2.53 -516.50 -1.30 -21.41 16 8 C 0.08 1.48 8.98 127.77 1.15 2.62 16 9 S 2.71 74.74 5.67 -56.49 -0.32 74.42 16 10 O -0.98 -31.89 16.46 -128.00 -2.11 -34.00 16 11 O -0.98 -29.81 15.79 -128.00 -2.02 -31.83 16 12 C -0.70 -21.51 5.97 22.27 0.13 -21.38 16 13 C -0.02 -0.60 9.52 22.27 0.21 -0.38 16 14 C -0.15 -5.60 9.70 22.27 0.22 -5.38 16 15 C 0.00 -0.11 5.07 -19.87 -0.10 -0.21 16 16 C 0.05 2.53 5.10 29.10 0.15 2.68 16 17 C -0.54 -29.85 9.09 25.60 0.23 -29.62 16 18 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 19 C 0.01 0.61 5.46 84.66 0.46 1.07 16 20 N -0.92 -53.97 13.29 21.45 0.28 -53.68 16 21 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C -0.15 -5.81 9.70 22.27 0.22 -5.59 16 26 C -0.02 -0.68 9.52 22.27 0.21 -0.47 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 0.71 7.75 -2.39 -0.02 0.69 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.11 6.76 -2.39 -0.02 1.09 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.39 2.10 9.12 -74.06 -0.68 1.43 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.13 7.98 -2.39 -0.02 1.11 16 37 H 0.12 1.81 4.94 -2.39 -0.01 1.80 16 38 H 0.16 3.92 7.61 -2.91 -0.02 3.89 16 39 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.01 0.79 8.09 -2.38 -0.02 0.77 16 41 H 0.01 0.69 8.09 -2.39 -0.02 0.67 16 42 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 44 H 0.15 4.14 7.62 -2.91 -0.02 4.12 16 Total: -1.00 -70.48 372.75 -0.26 -70.75 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.32 Total: 14.85 kcal Atomic # 6 Polarization: -60.58 SS G_CDS: 4.35 Total: -56.23 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -1.02 Total: -75.10 kcal Atomic # 8 Polarization: -68.61 SS G_CDS: -5.62 Total: -74.23 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 74.74 SS G_CDS: -0.32 Total: 74.42 kcal Total: -70.48 -0.26 -70.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885212979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.009 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds