Wall clock time and date at job start Tue Mar 31 2020 15:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47153 * 2 1 4 4 H 1.08996 * 109.47265 * 305.00213 * 3 2 1 5 5 N 1.46501 * 109.47126 * 65.00046 * 3 2 1 6 6 S 1.65608 * 120.00079 * 214.99708 * 5 3 2 7 7 O 1.42099 * 106.40241 * 178.54028 * 6 5 3 8 8 O 1.42097 * 106.39895 * 311.46103 * 6 5 3 9 9 C 1.76196 * 107.21621 * 65.00284 * 6 5 3 10 10 C 1.38236 * 119.99813 * 269.72930 * 9 6 5 11 11 C 1.38246 * 119.99772 * 179.74644 * 10 9 6 12 12 C 1.38234 * 119.99978 * 0.52514 * 11 10 9 13 13 C 1.50701 * 120.00056 * 179.77073 * 12 11 10 14 14 C 1.50693 * 109.46824 * 269.97850 * 13 12 11 15 15 H 1.07997 * 120.00375 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99363 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00342 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47390 * 59.99833 * 18 16 14 20 20 H 1.48503 * 109.47016 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47115 * 299.99708 * 18 16 14 22 22 C 1.38232 * 119.99799 * 359.74730 * 12 11 10 23 23 C 1.38231 * 120.00417 * 359.97438 * 22 12 11 24 24 C 1.53000 * 109.46960 * 185.00173 * 3 2 1 25 25 H 1.09002 * 109.47198 * 64.99990 * 24 3 2 26 26 C 1.53006 * 109.46915 * 184.99778 * 24 3 2 27 27 O 1.42898 * 109.46795 * 304.99842 * 24 3 2 28 28 H 1.09004 * 109.47427 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46748 * 299.99964 * 1 2 3 30 30 H 1.08996 * 109.46941 * 59.99601 * 1 2 3 31 31 H 1.09002 * 109.46581 * 239.99738 * 2 1 3 32 32 H 1.09002 * 109.46527 * 120.00243 * 2 1 3 33 33 H 0.97002 * 120.00027 * 35.00219 * 5 3 2 34 34 H 1.08001 * 120.00234 * 359.97438 * 10 9 6 35 35 H 1.08004 * 119.99705 * 180.29740 * 11 10 9 36 36 H 1.09000 * 109.46526 * 29.97799 * 13 12 11 37 37 H 1.08991 * 109.46819 * 149.97507 * 13 12 11 38 38 H 0.97000 * 119.99855 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.00018 * 179.97438 * 22 12 11 40 40 H 1.07996 * 120.00346 * 180.02562 * 23 22 12 41 41 H 1.09002 * 109.47014 * 60.00100 * 26 24 3 42 42 H 1.08997 * 109.46539 * 179.97438 * 26 24 3 43 43 H 1.08992 * 109.47634 * 300.00112 * 26 24 3 44 44 H 0.96696 * 114.00229 * 299.99458 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 16 1.2559 3.7053 1.2568 7 8 0.8987 4.0263 2.5942 8 8 2.2877 4.3752 0.5457 9 6 -0.2090 3.8841 0.2941 10 6 -0.1183 4.1269 -1.0637 11 6 -1.2677 4.2620 -1.8200 12 6 -2.5075 4.1650 -1.2164 13 6 -3.7604 4.3173 -2.0399 14 6 -4.1688 5.7676 -2.0694 15 1 -3.5802 6.5051 -1.5441 16 6 -5.2944 6.1528 -2.7663 17 7 -6.0114 5.2545 -3.4056 18 14 -5.8003 7.9506 -2.8035 19 1 -4.7106 8.7591 -3.4070 20 1 -7.0349 8.1007 -3.6149 21 1 -6.0571 8.4213 -1.4188 22 6 -2.5981 3.9277 0.1424 23 6 -1.4489 3.7869 0.8976 24 6 3.5649 1.4442 -0.1258 25 1 3.8499 1.0376 -1.0961 26 6 4.0852 2.8776 -0.0007 27 8 4.1293 0.6403 0.9121 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6283 1.5893 2.0778 34 1 0.8504 4.2075 -1.5344 35 1 -1.1968 4.4469 -2.8817 36 1 -3.5712 3.9723 -3.0564 37 1 -4.5602 3.7235 -1.5977 38 1 -6.8035 5.5254 -3.8956 39 1 -3.5668 3.8523 0.6140 40 1 -1.5197 3.6012 1.9591 41 1 3.8002 3.2843 0.9696 42 1 5.1715 2.8788 -0.0899 43 1 3.6547 3.4909 -0.7923 44 1 3.9163 0.9443 1.8050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885218666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:34 Heat of formation + Delta-G solvation = -114.805707 kcal Electronic energy + Delta-G solvation = -26637.827169 eV Core-core repulsion = 22874.625295 eV Total energy + Delta-G solvation = -3763.201874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.14730 -38.84163 -37.17912 -35.87754 -35.34106 -33.71705 -32.04726 -31.60430 -30.64502 -30.61142 -27.48065 -26.52902 -23.77185 -22.43638 -22.26410 -21.30627 -20.94520 -19.61999 -18.01353 -17.56107 -16.94141 -16.50188 -16.44980 -15.65666 -15.21132 -14.93274 -14.60312 -14.43836 -14.41807 -14.25360 -13.83041 -13.19589 -13.07518 -12.88893 -12.81324 -12.38567 -12.30434 -12.25717 -11.98756 -11.94322 -11.78603 -11.52838 -11.50476 -11.25283 -11.12172 -11.08939 -10.93634 -10.84774 -10.52204 -10.50564 -10.44263 -9.79866 -9.70282 -9.44864 -8.64190 -8.56566 -8.43225 -6.20029 -4.25334 0.43146 1.27448 1.73932 2.97241 3.23902 3.28290 3.31565 3.68611 4.05713 4.06784 4.34543 4.38245 4.47865 4.58357 4.78789 4.99727 5.08125 5.13075 5.16699 5.18246 5.19823 5.37829 5.50877 5.60207 5.67403 5.76685 5.79220 5.85103 5.86101 5.91007 6.08740 6.16741 6.19727 6.27091 6.38482 6.45207 6.72234 6.79015 6.86403 7.24890 7.37797 7.38373 7.54854 7.74726 8.09803 8.79189 9.39786 10.89954 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.003170 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.764604 B = 8830.130329 C = 9241.595971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C 0.122 3.878 4 H 0.094 0.906 5 N -1.114 6.114 6 S 2.689 3.311 7 O -0.968 6.968 8 O -0.954 6.954 9 C -0.702 4.702 10 C -0.026 4.026 11 C -0.145 4.145 12 C 0.028 3.972 13 C 0.040 3.960 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.145 4.145 23 C -0.021 4.021 24 C 0.087 3.913 25 H 0.106 0.894 26 C -0.185 4.185 27 O -0.560 6.560 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.416 0.584 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.340 -10.699 7.310 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C 0.014 3.986 4 H 0.112 0.888 5 N -0.872 5.872 6 S 2.782 3.218 7 O -0.958 6.958 8 O -0.944 6.944 9 C -0.792 4.792 10 C -0.045 4.045 11 C -0.164 4.164 12 C 0.027 3.973 13 C 0.003 3.997 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.163 4.163 23 C -0.041 4.041 24 C 0.026 3.974 25 H 0.124 0.876 26 C -0.242 4.242 27 O -0.365 6.365 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.250 0.750 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 16.882 -10.285 6.941 20.951 hybrid contribution -1.392 0.974 0.228 1.714 sum 15.491 -9.311 7.169 19.443 Atomic orbital electron populations 1.21814 0.95076 1.01817 1.02697 1.21688 0.96325 0.94553 1.03358 1.21658 0.95536 0.95470 0.85927 0.88758 1.55690 1.84685 1.30755 1.16103 1.01823 0.73968 0.72478 0.73530 1.93571 1.84668 1.82082 1.35489 1.93674 1.53552 1.72535 1.74619 1.30266 1.17263 1.23397 1.08229 1.20768 0.99093 0.93176 0.91499 1.21245 0.91894 1.02661 1.00566 1.21116 0.97179 0.84724 0.94250 1.18531 0.88550 0.98081 0.94550 1.20926 1.10365 0.91754 1.32681 0.92350 1.25001 0.96118 0.97962 0.95005 1.69935 1.16841 1.33594 1.32575 0.86534 0.77994 0.84535 0.78304 1.20024 1.21085 1.20027 1.21244 0.98267 1.02621 0.94218 1.20750 0.91230 0.93066 0.99056 1.22465 0.91008 0.91983 0.91927 0.87577 1.22825 1.00999 0.95306 1.05119 1.86545 1.76617 1.55807 1.17520 0.92596 0.92360 0.92305 0.90674 0.90777 0.75006 0.85329 0.85382 0.94724 0.94736 0.92542 0.85394 0.85410 0.91424 0.92768 0.89675 0.78203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.80 37.16 0.36 -0.98 16 2 C -0.12 -0.88 5.25 -26.73 -0.14 -1.02 16 3 C 0.12 0.98 2.26 -67.93 -0.15 0.82 16 4 H 0.09 0.78 7.25 -51.93 -0.38 0.40 16 5 N -1.11 -9.26 3.99 -4.89 -0.02 -9.28 16 6 S 2.69 32.96 5.35 -107.50 -0.57 32.39 16 7 O -0.97 -14.61 17.28 -57.17 -0.99 -15.60 16 8 O -0.95 -12.96 11.93 -57.17 -0.68 -13.65 16 9 C -0.70 -10.20 5.82 -39.58 -0.23 -10.43 16 10 C -0.03 -0.39 8.92 -39.58 -0.35 -0.74 16 11 C -0.14 -2.55 9.70 -39.58 -0.38 -2.93 16 12 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 13 C 0.04 0.95 5.10 -29.04 -0.15 0.80 16 14 C -0.52 -13.90 9.09 -34.44 -0.31 -14.21 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.14 -2.59 9.70 -39.59 -0.38 -2.98 16 23 C -0.02 -0.34 9.52 -39.58 -0.38 -0.71 16 24 C 0.09 0.72 3.50 -26.73 -0.09 0.63 16 25 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 26 C -0.18 -1.82 7.68 37.16 0.29 -1.54 16 27 O -0.56 -4.75 12.56 -35.23 -0.44 -5.19 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.51 7.75 -51.92 -0.40 0.11 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.51 7.73 -51.93 -0.40 0.11 16 33 H 0.42 2.54 8.82 -34.48 -0.30 2.24 16 34 H 0.13 1.60 7.61 -52.49 -0.40 1.20 16 35 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 41 H 0.07 0.71 5.45 -51.93 -0.28 0.43 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.91 6.97 -51.93 -0.36 0.55 16 44 H 0.37 2.23 8.64 45.56 0.39 2.63 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -32.18 369.03 -9.86 -42.04 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.88 Total: 4.05 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: -2.56 Total: -31.70 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.72 Total: -33.81 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -2.11 Total: -34.44 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 32.96 SS G_CDS: -0.57 Total: 32.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.18 -9.86 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885218666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.765 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds