Wall clock time and date at job start Tue Mar 31 2020 15:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47153 * 2 1 4 4 H 1.08996 * 109.47265 * 305.00213 * 3 2 1 5 5 N 1.46501 * 109.47126 * 65.00046 * 3 2 1 6 6 S 1.65608 * 120.00079 * 214.99708 * 5 3 2 7 7 O 1.42099 * 106.40241 * 178.54028 * 6 5 3 8 8 O 1.42097 * 106.39895 * 311.46103 * 6 5 3 9 9 C 1.76196 * 107.21621 * 65.00284 * 6 5 3 10 10 C 1.38236 * 119.99813 * 269.72930 * 9 6 5 11 11 C 1.38246 * 119.99772 * 179.74644 * 10 9 6 12 12 C 1.38234 * 119.99978 * 0.52514 * 11 10 9 13 13 C 1.50701 * 120.00056 * 179.77073 * 12 11 10 14 14 C 1.50693 * 109.46824 * 269.97850 * 13 12 11 15 15 H 1.07997 * 120.00375 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99363 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00342 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47390 * 59.99833 * 18 16 14 20 20 H 1.48503 * 109.47016 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47115 * 299.99708 * 18 16 14 22 22 C 1.38232 * 119.99799 * 359.74730 * 12 11 10 23 23 C 1.38231 * 120.00417 * 359.97438 * 22 12 11 24 24 C 1.53000 * 109.46960 * 185.00173 * 3 2 1 25 25 H 1.09002 * 109.47198 * 64.99990 * 24 3 2 26 26 C 1.53006 * 109.46915 * 184.99778 * 24 3 2 27 27 O 1.42898 * 109.46795 * 304.99842 * 24 3 2 28 28 H 1.09004 * 109.47427 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46748 * 299.99964 * 1 2 3 30 30 H 1.08996 * 109.46941 * 59.99601 * 1 2 3 31 31 H 1.09002 * 109.46581 * 239.99738 * 2 1 3 32 32 H 1.09002 * 109.46527 * 120.00243 * 2 1 3 33 33 H 0.97002 * 120.00027 * 35.00219 * 5 3 2 34 34 H 1.08001 * 120.00234 * 359.97438 * 10 9 6 35 35 H 1.08004 * 119.99705 * 180.29740 * 11 10 9 36 36 H 1.09000 * 109.46526 * 29.97799 * 13 12 11 37 37 H 1.08991 * 109.46819 * 149.97507 * 13 12 11 38 38 H 0.97000 * 119.99855 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.00018 * 179.97438 * 22 12 11 40 40 H 1.07996 * 120.00346 * 180.02562 * 23 22 12 41 41 H 1.09002 * 109.47014 * 60.00100 * 26 24 3 42 42 H 1.08997 * 109.46539 * 179.97438 * 26 24 3 43 43 H 1.08992 * 109.47634 * 300.00112 * 26 24 3 44 44 H 0.96696 * 114.00229 * 299.99458 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 16 1.2559 3.7053 1.2568 7 8 0.8987 4.0263 2.5942 8 8 2.2877 4.3752 0.5457 9 6 -0.2090 3.8841 0.2941 10 6 -0.1183 4.1269 -1.0637 11 6 -1.2677 4.2620 -1.8200 12 6 -2.5075 4.1650 -1.2164 13 6 -3.7604 4.3173 -2.0399 14 6 -4.1688 5.7676 -2.0694 15 1 -3.5802 6.5051 -1.5441 16 6 -5.2944 6.1528 -2.7663 17 7 -6.0114 5.2545 -3.4056 18 14 -5.8003 7.9506 -2.8035 19 1 -4.7106 8.7591 -3.4070 20 1 -7.0349 8.1007 -3.6149 21 1 -6.0571 8.4213 -1.4188 22 6 -2.5981 3.9277 0.1424 23 6 -1.4489 3.7869 0.8976 24 6 3.5649 1.4442 -0.1258 25 1 3.8499 1.0376 -1.0961 26 6 4.0852 2.8776 -0.0007 27 8 4.1293 0.6403 0.9121 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6283 1.5893 2.0778 34 1 0.8504 4.2075 -1.5344 35 1 -1.1968 4.4469 -2.8817 36 1 -3.5712 3.9723 -3.0564 37 1 -4.5602 3.7235 -1.5977 38 1 -6.8035 5.5254 -3.8956 39 1 -3.5668 3.8523 0.6140 40 1 -1.5197 3.6012 1.9591 41 1 3.8002 3.2843 0.9696 42 1 5.1715 2.8788 -0.0899 43 1 3.6547 3.4909 -0.7923 44 1 3.9163 0.9443 1.8050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885218666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:33 Heat of formation + Delta-G solvation = -137.608959 kcal Electronic energy + Delta-G solvation = -26638.815992 eV Core-core repulsion = 22874.625295 eV Total energy + Delta-G solvation = -3764.190697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23893 -39.80873 -38.24759 -36.96778 -36.01786 -35.59050 -33.32045 -32.74443 -31.95426 -31.33533 -29.24796 -27.23795 -25.59310 -23.74394 -22.94329 -22.44365 -21.98577 -20.60630 -19.08216 -18.61471 -18.47684 -17.71078 -17.25078 -16.84841 -16.65298 -16.04773 -15.96374 -15.55295 -15.24932 -15.10903 -14.97305 -14.61259 -14.45461 -13.95055 -13.85531 -13.55159 -13.42993 -13.39710 -13.32713 -13.23791 -12.80667 -12.70924 -12.66024 -12.62379 -12.33540 -12.25289 -12.03562 -11.78474 -11.77158 -11.73423 -11.69132 -11.29721 -11.20528 -10.65831 -10.19470 -9.94863 -9.93198 -8.27857 -6.40754 -0.60136 -0.04382 0.40685 1.38051 1.39422 1.47942 2.01244 2.34182 2.57610 2.84490 3.04812 3.35302 3.46251 3.82008 3.87692 3.93613 3.97722 4.15244 4.17119 4.31135 4.44266 4.48160 4.50502 4.51150 4.73520 4.79796 4.83018 4.91230 4.95659 5.08578 5.11388 5.22660 5.23866 5.25027 5.25488 5.34337 5.43372 5.51697 5.62238 5.66214 5.87127 5.93135 6.09413 6.10456 6.71056 6.86712 7.28413 8.81990 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.003170 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.764604 B = 8830.130329 C = 9241.595971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.113 4.113 3 C 0.119 3.881 4 H 0.095 0.905 5 N -1.096 6.096 6 S 2.716 3.284 7 O -0.990 6.990 8 O -0.961 6.961 9 C -0.698 4.698 10 C -0.018 4.018 11 C -0.154 4.154 12 C -0.003 4.003 13 C 0.048 3.952 14 C -0.535 4.535 15 H 0.054 0.946 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.269 1.269 22 C -0.155 4.155 23 C -0.019 4.019 24 C 0.094 3.906 25 H 0.117 0.883 26 C -0.188 4.188 27 O -0.568 6.568 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.429 0.571 34 H 0.159 0.841 35 H 0.129 0.871 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.267 0.733 39 H 0.125 0.875 40 H 0.151 0.849 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.430 -10.895 8.344 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.152 4.152 3 C 0.012 3.988 4 H 0.113 0.887 5 N -0.859 5.859 6 S 2.806 3.194 7 O -0.981 6.981 8 O -0.951 6.951 9 C -0.785 4.785 10 C -0.037 4.037 11 C -0.173 4.173 12 C -0.003 4.003 13 C 0.012 3.988 14 C -0.573 4.573 15 H 0.072 0.928 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.194 1.194 22 C -0.174 4.174 23 C -0.039 4.039 24 C 0.033 3.967 25 H 0.135 0.865 26 C -0.246 4.246 27 O -0.374 6.374 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.267 0.733 34 H 0.177 0.823 35 H 0.147 0.853 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.143 0.857 40 H 0.169 0.831 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 18.950 -10.481 7.982 23.080 hybrid contribution -1.908 0.938 -0.034 2.126 sum 17.043 -9.542 7.948 21.087 Atomic orbital electron populations 1.21836 0.96135 1.01931 1.01779 1.21648 0.95185 0.94039 1.04341 1.21788 0.95673 0.95878 0.85433 0.88734 1.55320 1.83781 1.29546 1.17207 1.01100 0.72800 0.73148 0.72308 1.93543 1.84837 1.83139 1.36543 1.93679 1.53076 1.73622 1.74726 1.30818 1.18227 1.21077 1.08360 1.21042 0.99356 0.91642 0.91616 1.21300 0.91960 1.03026 1.00987 1.20786 0.96294 0.88378 0.94881 1.18249 0.90124 0.96466 0.94000 1.21270 1.10497 0.93139 1.32406 0.92803 1.25860 0.96143 1.02288 0.94601 1.70047 1.17354 1.35632 1.33416 0.85526 0.77834 0.79361 0.78537 1.19310 1.20410 1.19413 1.21266 0.99318 1.03195 0.93656 1.20971 0.90723 0.92174 0.99991 1.22411 0.90636 0.91086 0.92539 0.86493 1.22832 1.01180 0.96220 1.04349 1.86535 1.76746 1.55844 1.18283 0.92095 0.92655 0.93816 0.89774 0.89717 0.73287 0.82333 0.85342 0.96846 0.97050 0.92369 0.85670 0.83149 0.92142 0.92640 0.90472 0.76981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.80 71.98 0.71 -1.74 16 2 C -0.11 -1.34 5.25 30.59 0.16 -1.18 16 3 C 0.12 1.57 2.26 44.99 0.10 1.68 16 4 H 0.09 1.30 7.25 -2.39 -0.02 1.28 16 5 N -1.10 -15.08 3.99 -169.40 -0.68 -15.76 16 6 S 2.72 59.78 5.35 -56.49 -0.30 59.47 16 7 O -0.99 -27.45 17.28 -128.00 -2.21 -29.66 16 8 O -0.96 -23.63 11.93 -128.00 -1.53 -25.16 16 9 C -0.70 -19.01 5.82 22.27 0.13 -18.88 16 10 C -0.02 -0.50 8.92 22.27 0.20 -0.30 16 11 C -0.15 -5.45 9.70 22.27 0.22 -5.23 16 12 C 0.00 -0.13 5.07 -19.87 -0.10 -0.23 16 13 C 0.05 2.46 5.10 29.10 0.15 2.61 16 14 C -0.54 -29.60 9.09 25.60 0.23 -29.37 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 16 C 0.01 0.57 5.46 84.66 0.46 1.03 16 17 N -0.93 -53.98 13.29 21.45 0.28 -53.69 16 18 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 C -0.16 -5.67 9.70 22.27 0.22 -5.45 16 23 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 24 C 0.09 1.28 3.50 30.60 0.11 1.38 16 25 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 26 C -0.19 -3.25 7.68 71.98 0.55 -2.69 16 27 O -0.57 -7.83 12.56 -148.98 -1.87 -9.70 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.87 7.75 -2.38 -0.02 0.85 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.86 7.73 -2.39 -0.02 0.85 16 33 H 0.43 3.85 8.82 -96.74 -0.85 3.00 16 34 H 0.16 3.52 7.61 -2.91 -0.02 3.49 16 35 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 37 H 0.01 0.60 8.08 -2.39 -0.02 0.58 16 38 H 0.27 14.68 8.31 -92.71 -0.77 13.90 16 39 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.15 3.79 7.62 -2.91 -0.02 3.76 16 41 H 0.06 1.12 5.45 -2.39 -0.01 1.11 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.46 6.97 -2.39 -0.02 1.45 16 44 H 0.38 3.35 8.64 -74.06 -0.64 2.71 16 Total: -1.00 -69.75 369.03 -1.41 -71.17 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -0.48 Total: 16.74 kcal Atomic # 6 Polarization: -62.09 SS G_CDS: 3.34 Total: -58.75 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -0.39 Total: -69.45 kcal Atomic # 8 Polarization: -58.91 SS G_CDS: -5.61 Total: -64.52 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 59.78 SS G_CDS: -0.30 Total: 59.47 kcal Total: -69.75 -1.41 -71.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885218666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.443 kcal (2) G-P(sol) polarization free energy of solvation -69.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds