Wall clock time and date at job start Tue Mar 31 2020 15:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46962 * 2 1 4 4 H 1.09003 * 109.46762 * 54.65086 * 3 2 1 5 5 N 1.46498 * 109.46957 * 294.65544 * 3 2 1 6 6 S 1.65604 * 120.00307 * 117.29508 * 5 3 2 7 7 O 1.42098 * 106.40349 * 178.81929 * 6 5 3 8 8 O 1.42101 * 106.39823 * 311.74099 * 6 5 3 9 9 C 1.76202 * 107.21517 * 65.27900 * 6 5 3 10 10 C 1.38236 * 119.99878 * 269.72382 * 9 6 5 11 11 C 1.38240 * 119.99758 * 179.76600 * 10 9 6 12 12 C 1.38234 * 119.99549 * 0.49239 * 11 10 9 13 13 C 1.50700 * 119.99558 * 179.76224 * 12 11 10 14 14 C 1.50701 * 109.47546 * 270.02455 * 13 12 11 15 15 H 1.07998 * 119.99570 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99944 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00289 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99785 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47085 * 59.99847 * 18 16 14 20 20 H 1.48495 * 109.47217 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47128 * 299.99984 * 18 16 14 22 22 C 1.38235 * 120.00321 * 359.78730 * 12 11 10 23 23 C 1.38228 * 119.99888 * 359.95692 * 22 12 11 24 24 C 1.52994 * 109.47358 * 174.65143 * 3 2 1 25 25 H 1.08996 * 109.47456 * 174.99755 * 24 3 2 26 26 C 1.52998 * 109.47023 * 295.00284 * 24 3 2 27 27 O 1.42906 * 109.46958 * 55.00138 * 24 3 2 28 28 H 1.08991 * 109.47559 * 302.11902 * 1 2 3 29 29 H 1.08999 * 109.46830 * 62.12225 * 1 2 3 30 30 H 1.09002 * 109.46889 * 182.11270 * 1 2 3 31 31 H 1.08997 * 109.47542 * 240.00453 * 2 1 3 32 32 H 1.09002 * 109.47222 * 119.99346 * 2 1 3 33 33 H 0.97006 * 120.00138 * 297.01386 * 5 3 2 34 34 H 1.08002 * 120.00170 * 0.02562 * 10 9 6 35 35 H 1.07999 * 119.99790 * 180.25444 * 11 10 9 36 36 H 1.09008 * 109.46921 * 30.02358 * 13 12 11 37 37 H 1.08997 * 109.47152 * 150.02263 * 13 12 11 38 38 H 0.97003 * 119.99652 * 179.97438 * 17 16 14 39 39 H 1.08000 * 119.99872 * 179.97438 * 22 12 11 40 40 H 1.08000 * 119.99845 * 179.97438 * 23 22 12 41 41 H 1.08998 * 109.47610 * 60.00222 * 26 24 3 42 42 H 1.09006 * 109.47181 * 179.97438 * 26 24 3 43 43 H 1.08996 * 109.47250 * 299.99337 * 26 24 3 44 44 H 0.96705 * 113.99498 * 300.00315 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6005 1.9833 0.8382 5 7 1.6595 2.0950 -1.2553 6 16 0.6453 3.4039 -1.2340 7 8 0.4949 3.8171 -2.5852 8 8 -0.4514 3.0482 -0.4033 9 6 1.4939 4.7078 -0.4065 10 6 1.3689 4.8544 0.9623 11 6 2.0385 5.8744 1.6122 12 6 2.8249 6.7538 0.8917 13 6 3.5506 7.8689 1.5994 14 6 2.6695 9.0906 1.6478 15 1 1.6826 9.0621 1.2102 16 6 3.1234 10.2445 2.2506 17 7 4.3251 10.2789 2.7839 18 14 2.0315 11.7590 2.3100 19 1 0.7807 11.4389 3.0437 20 1 2.7466 12.8577 3.0074 21 1 1.6989 12.1839 0.9265 22 6 2.9453 6.6106 -0.4780 23 6 2.2799 5.5875 -1.1270 24 6 3.5640 1.4448 0.1345 25 1 3.9352 2.4657 0.0454 26 6 3.9563 0.8767 1.4998 27 8 4.1345 0.6388 -0.8986 28 1 -0.3634 0.5463 0.8703 29 1 -0.3633 0.4805 -0.9084 30 1 -0.3633 -1.0270 0.0379 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8901 33 1 2.0049 1.7628 -2.0987 34 1 0.7515 4.1696 1.5247 35 1 1.9441 5.9865 2.6822 36 1 3.7948 7.5566 2.6148 37 1 4.4686 8.1042 1.0609 38 1 4.6445 11.0909 3.2077 39 1 3.5593 7.2979 -1.0409 40 1 2.3736 5.4759 -2.1971 41 1 3.5853 -0.1443 1.5889 42 1 5.0422 0.8779 1.5955 43 1 3.5213 1.4915 2.2877 44 1 3.8477 -0.2846 -0.8805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885218686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:43 Heat of formation + Delta-G solvation = -124.340271 kcal Electronic energy + Delta-G solvation = -26390.533279 eV Core-core repulsion = 22626.917955 eV Total energy + Delta-G solvation = -3763.615324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.18928 -38.81097 -37.12994 -35.77815 -35.31363 -33.69864 -32.03751 -31.57895 -31.00715 -30.60341 -27.44941 -26.10931 -23.74445 -23.28466 -22.39328 -20.92940 -20.85403 -19.51661 -17.88639 -17.46645 -17.20851 -16.45975 -15.99124 -15.64151 -15.30349 -15.13096 -14.82258 -14.49355 -14.39342 -14.26996 -13.74964 -13.15770 -13.04149 -12.87367 -12.69442 -12.36035 -12.29039 -12.24233 -12.12827 -11.95109 -11.90214 -11.72400 -11.50367 -11.46228 -11.28163 -11.09464 -10.94945 -10.91721 -10.65360 -10.49738 -10.45264 -9.77989 -9.68917 -9.45788 -8.61814 -8.54928 -8.40875 -6.18401 -4.23632 0.49863 1.30099 1.76587 3.02466 3.25253 3.29495 3.32932 3.75391 4.05146 4.09183 4.35762 4.38748 4.43231 4.44783 4.70105 4.84919 4.91683 5.07831 5.15122 5.20053 5.22626 5.23889 5.37879 5.47154 5.58041 5.68849 5.69959 5.78935 5.80057 5.88658 5.90464 6.00796 6.14824 6.22239 6.30234 6.48211 6.81198 6.85201 6.89205 7.27021 7.33701 7.40716 7.56912 7.76412 8.11623 8.80891 9.41431 10.91563 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.003240 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.613114 B = 8640.947866 C = 9318.451682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.123 3.877 4 H 0.099 0.901 5 N -1.108 6.108 6 S 2.694 3.306 7 O -0.967 6.967 8 O -0.961 6.961 9 C -0.705 4.705 10 C -0.027 4.027 11 C -0.145 4.145 12 C 0.027 3.973 13 C 0.040 3.960 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.145 4.145 23 C -0.021 4.021 24 C 0.091 3.909 25 H 0.108 0.892 26 C -0.189 4.189 27 O -0.557 6.557 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.419 0.581 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 -22.164 -4.413 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.015 3.985 4 H 0.117 0.883 5 N -0.866 5.866 6 S 2.787 3.213 7 O -0.957 6.957 8 O -0.951 6.951 9 C -0.795 4.795 10 C -0.047 4.047 11 C -0.164 4.164 12 C 0.027 3.973 13 C 0.003 3.997 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.164 4.164 23 C -0.040 4.040 24 C 0.030 3.970 25 H 0.126 0.874 26 C -0.247 4.247 27 O -0.362 6.362 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.254 0.746 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.749 -21.389 -4.660 22.062 hybrid contribution -0.072 0.765 0.327 0.835 sum -2.821 -20.624 -4.333 21.262 Atomic orbital electron populations 1.21747 0.94447 1.01401 1.03252 1.21960 0.97684 0.95608 1.02567 1.21551 0.95788 0.94961 0.86225 0.88337 1.55573 1.68888 1.47758 1.14348 1.01698 0.73488 0.72744 0.73411 1.93568 1.85456 1.81993 1.34712 1.93569 1.48896 1.82838 1.69761 1.30352 1.21340 1.21822 1.05951 1.20770 0.94961 0.96990 0.91939 1.21240 0.98811 0.95704 1.00644 1.21120 0.90164 0.92364 0.93690 1.18535 0.95409 0.90063 0.95710 1.20931 1.01283 0.95457 1.38023 0.92339 1.24998 0.95210 0.98906 0.94974 1.69937 1.17120 1.28548 1.37360 0.86535 0.80461 0.81905 0.78468 1.20033 1.21095 1.20021 1.21257 1.01711 0.98535 0.94871 1.20774 0.91698 0.92560 0.98995 1.22378 0.91176 0.96344 0.87100 0.87376 1.22556 1.02984 1.01776 0.97359 1.86627 1.71840 1.24476 1.53298 0.91725 0.92488 0.92821 0.91178 0.90430 0.74618 0.85367 0.85359 0.94718 0.94711 0.92556 0.85331 0.85279 0.91843 0.91293 0.90979 0.78203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.27 37.16 0.34 -0.92 16 2 C -0.14 -0.90 4.89 -26.73 -0.13 -1.03 16 3 C 0.12 1.02 2.15 -67.93 -0.15 0.87 16 4 H 0.10 0.84 7.63 -51.93 -0.40 0.45 16 5 N -1.11 -10.74 4.85 -4.89 -0.02 -10.76 16 6 S 2.69 36.34 5.60 -107.50 -0.60 35.73 16 7 O -0.97 -15.72 17.28 -57.17 -0.99 -16.71 16 8 O -0.96 -14.48 16.00 -57.17 -0.91 -15.40 16 9 C -0.71 -10.82 5.95 -39.58 -0.24 -11.06 16 10 C -0.03 -0.42 9.45 -39.58 -0.37 -0.80 16 11 C -0.15 -2.61 9.70 -39.58 -0.38 -2.99 16 12 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 13 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 14 C -0.52 -14.01 9.09 -34.44 -0.31 -14.32 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.14 -2.68 9.70 -39.59 -0.38 -3.06 16 23 C -0.02 -0.34 9.52 -39.59 -0.38 -0.72 16 24 C 0.09 0.75 3.58 -26.74 -0.10 0.65 16 25 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 26 C -0.19 -1.28 9.30 37.16 0.35 -0.93 16 27 O -0.56 -4.60 13.13 -35.23 -0.46 -5.07 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.36 7.02 -51.93 -0.36 0.00 16 32 H 0.08 0.38 6.33 -51.93 -0.33 0.05 16 33 H 0.42 3.48 8.89 -34.47 -0.31 3.17 16 34 H 0.13 1.67 7.61 -52.49 -0.40 1.27 16 35 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.03 0.87 8.09 -51.92 -0.42 0.45 16 37 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.13 1.86 7.62 -52.49 -0.40 1.46 16 41 H 0.06 0.32 6.45 -51.93 -0.34 -0.02 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.37 1.79 7.32 45.56 0.33 2.12 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -33.04 374.61 -10.08 -43.12 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.92 Total: 3.96 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -2.53 Total: -31.88 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.71 Total: -35.45 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -2.37 Total: -37.17 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 36.34 SS G_CDS: -0.60 Total: 35.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.04 -10.08 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885218686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.221 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds