Wall clock time and date at job start Tue Mar 31 2020 15:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46962 * 2 1 4 4 H 1.09003 * 109.46762 * 54.65086 * 3 2 1 5 5 N 1.46498 * 109.46957 * 294.65544 * 3 2 1 6 6 S 1.65604 * 120.00307 * 117.29508 * 5 3 2 7 7 O 1.42098 * 106.40349 * 178.81929 * 6 5 3 8 8 O 1.42101 * 106.39823 * 311.74099 * 6 5 3 9 9 C 1.76202 * 107.21517 * 65.27900 * 6 5 3 10 10 C 1.38236 * 119.99878 * 269.72382 * 9 6 5 11 11 C 1.38240 * 119.99758 * 179.76600 * 10 9 6 12 12 C 1.38234 * 119.99549 * 0.49239 * 11 10 9 13 13 C 1.50700 * 119.99558 * 179.76224 * 12 11 10 14 14 C 1.50701 * 109.47546 * 270.02455 * 13 12 11 15 15 H 1.07998 * 119.99570 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99944 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00289 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99785 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47085 * 59.99847 * 18 16 14 20 20 H 1.48495 * 109.47217 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47128 * 299.99984 * 18 16 14 22 22 C 1.38235 * 120.00321 * 359.78730 * 12 11 10 23 23 C 1.38228 * 119.99888 * 359.95692 * 22 12 11 24 24 C 1.52994 * 109.47358 * 174.65143 * 3 2 1 25 25 H 1.08996 * 109.47456 * 174.99755 * 24 3 2 26 26 C 1.52998 * 109.47023 * 295.00284 * 24 3 2 27 27 O 1.42906 * 109.46958 * 55.00138 * 24 3 2 28 28 H 1.08991 * 109.47559 * 302.11902 * 1 2 3 29 29 H 1.08999 * 109.46830 * 62.12225 * 1 2 3 30 30 H 1.09002 * 109.46889 * 182.11270 * 1 2 3 31 31 H 1.08997 * 109.47542 * 240.00453 * 2 1 3 32 32 H 1.09002 * 109.47222 * 119.99346 * 2 1 3 33 33 H 0.97006 * 120.00138 * 297.01386 * 5 3 2 34 34 H 1.08002 * 120.00170 * 0.02562 * 10 9 6 35 35 H 1.07999 * 119.99790 * 180.25444 * 11 10 9 36 36 H 1.09008 * 109.46921 * 30.02358 * 13 12 11 37 37 H 1.08997 * 109.47152 * 150.02263 * 13 12 11 38 38 H 0.97003 * 119.99652 * 179.97438 * 17 16 14 39 39 H 1.08000 * 119.99872 * 179.97438 * 22 12 11 40 40 H 1.08000 * 119.99845 * 179.97438 * 23 22 12 41 41 H 1.08998 * 109.47610 * 60.00222 * 26 24 3 42 42 H 1.09006 * 109.47181 * 179.97438 * 26 24 3 43 43 H 1.08996 * 109.47250 * 299.99337 * 26 24 3 44 44 H 0.96705 * 113.99498 * 300.00315 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6005 1.9833 0.8382 5 7 1.6595 2.0950 -1.2553 6 16 0.6453 3.4039 -1.2340 7 8 0.4949 3.8171 -2.5852 8 8 -0.4514 3.0482 -0.4033 9 6 1.4939 4.7078 -0.4065 10 6 1.3689 4.8544 0.9623 11 6 2.0385 5.8744 1.6122 12 6 2.8249 6.7538 0.8917 13 6 3.5506 7.8689 1.5994 14 6 2.6695 9.0906 1.6478 15 1 1.6826 9.0621 1.2102 16 6 3.1234 10.2445 2.2506 17 7 4.3251 10.2789 2.7839 18 14 2.0315 11.7590 2.3100 19 1 0.7807 11.4389 3.0437 20 1 2.7466 12.8577 3.0074 21 1 1.6989 12.1839 0.9265 22 6 2.9453 6.6106 -0.4780 23 6 2.2799 5.5875 -1.1270 24 6 3.5640 1.4448 0.1345 25 1 3.9352 2.4657 0.0454 26 6 3.9563 0.8767 1.4998 27 8 4.1345 0.6388 -0.8986 28 1 -0.3634 0.5463 0.8703 29 1 -0.3633 0.4805 -0.9084 30 1 -0.3633 -1.0270 0.0379 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8901 33 1 2.0049 1.7628 -2.0987 34 1 0.7515 4.1696 1.5247 35 1 1.9441 5.9865 2.6822 36 1 3.7948 7.5566 2.6148 37 1 4.4686 8.1042 1.0609 38 1 4.6445 11.0909 3.2077 39 1 3.5593 7.2979 -1.0409 40 1 2.3736 5.4759 -2.1971 41 1 3.5853 -0.1443 1.5889 42 1 5.0422 0.8779 1.5955 43 1 3.5213 1.4915 2.2877 44 1 3.8477 -0.2846 -0.8805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885218686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:42 Heat of formation + Delta-G solvation = -148.432468 kcal Electronic energy + Delta-G solvation = -26391.577995 eV Core-core repulsion = 22626.917955 eV Total energy + Delta-G solvation = -3764.660040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.26111 -39.80558 -38.30729 -36.96417 -36.00493 -35.60413 -33.33772 -32.73156 -31.97843 -31.58773 -29.25199 -26.76041 -25.59840 -23.86879 -23.75248 -22.48429 -21.51250 -20.59757 -19.03009 -18.60072 -18.40739 -18.05290 -16.90975 -16.85022 -16.37071 -16.24641 -15.99638 -15.66528 -15.50404 -15.25092 -14.90556 -14.62709 -14.47075 -13.94041 -13.70427 -13.44883 -13.41613 -13.36551 -13.19538 -13.15797 -13.01403 -12.83364 -12.76385 -12.67070 -12.66171 -12.22961 -12.08062 -12.03320 -11.88093 -11.70527 -11.63131 -11.41574 -11.19338 -10.65697 -10.23830 -9.97593 -9.94924 -8.27719 -6.40648 -0.61876 -0.07513 0.38438 1.38164 1.39645 1.48163 1.99952 2.34181 2.55858 2.82329 3.04922 3.32487 3.49372 3.74165 3.81265 3.86604 3.95280 4.13443 4.15368 4.21902 4.34768 4.46142 4.47984 4.50254 4.67362 4.79814 4.82139 4.89759 4.90849 4.97341 5.09407 5.16257 5.22577 5.23848 5.25232 5.32272 5.34520 5.44399 5.53379 5.66202 5.85373 5.91272 6.08991 6.11940 6.70964 6.91241 7.28497 8.82128 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.003240 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.613114 B = 8640.947866 C = 9318.451682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.134 4.134 3 C 0.116 3.884 4 H 0.098 0.902 5 N -1.093 6.093 6 S 2.720 3.280 7 O -0.991 6.991 8 O -0.972 6.972 9 C -0.702 4.702 10 C -0.019 4.019 11 C -0.152 4.152 12 C -0.003 4.003 13 C 0.049 3.951 14 C -0.536 4.536 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.270 1.270 22 C -0.156 4.156 23 C -0.021 4.021 24 C 0.095 3.905 25 H 0.085 0.915 26 C -0.187 4.187 27 O -0.570 6.570 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.428 0.572 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.015 0.985 37 H 0.012 0.988 38 H 0.268 0.732 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 -24.299 -4.807 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.008 3.992 4 H 0.115 0.885 5 N -0.855 5.855 6 S 2.809 3.191 7 O -0.982 6.982 8 O -0.961 6.961 9 C -0.789 4.789 10 C -0.038 4.038 11 C -0.171 4.171 12 C -0.003 4.003 13 C 0.012 3.988 14 C -0.574 4.574 15 H 0.072 0.928 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.195 1.195 22 C -0.174 4.174 23 C -0.040 4.040 24 C 0.034 3.966 25 H 0.103 0.897 26 C -0.245 4.245 27 O -0.378 6.378 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.266 0.734 34 H 0.176 0.824 35 H 0.150 0.850 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.145 0.855 40 H 0.168 0.832 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.948 -23.522 -5.053 24.380 hybrid contribution 0.306 1.254 0.404 1.353 sum -3.642 -22.268 -4.648 23.037 Atomic orbital electron populations 1.21792 0.95781 1.01999 1.01826 1.21972 0.96354 0.94314 1.04621 1.21798 0.95951 0.96188 0.85230 0.88451 1.55259 1.68449 1.46106 1.15641 1.00969 0.73306 0.72523 0.72252 1.93534 1.85996 1.82741 1.35901 1.93558 1.49709 1.82864 1.70006 1.30838 1.19926 1.22051 1.06048 1.21045 0.94196 0.96297 0.92218 1.21311 0.98814 0.96013 1.00947 1.20812 0.92162 0.92749 0.94562 1.18258 0.94711 0.91083 0.94785 1.21268 1.01430 0.96847 1.37807 0.92812 1.25855 0.96505 1.01961 0.94541 1.70048 1.18720 1.29467 1.38182 0.85524 0.78784 0.78255 0.78675 1.19282 1.20367 1.19470 1.21286 1.02402 0.99489 0.94270 1.20984 0.91151 0.91775 1.00077 1.22227 0.90811 0.95562 0.87973 0.89707 1.22547 1.02648 1.03055 0.96272 1.86600 1.72086 1.25779 1.53296 0.92923 0.94122 0.91328 0.89363 0.88133 0.73428 0.82363 0.85006 0.96661 0.97017 0.92356 0.85524 0.83223 0.89519 0.91966 0.91038 0.76322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.27 71.98 0.67 -1.52 16 2 C -0.13 -1.26 4.89 30.60 0.15 -1.11 16 3 C 0.12 1.62 2.15 44.99 0.10 1.72 16 4 H 0.10 1.42 7.63 -2.39 -0.02 1.40 16 5 N -1.09 -18.73 4.85 -169.39 -0.82 -19.55 16 6 S 2.72 68.21 5.60 -56.49 -0.32 67.90 16 7 O -0.99 -30.51 17.28 -128.00 -2.21 -32.72 16 8 O -0.97 -27.23 16.00 -128.00 -2.05 -29.28 16 9 C -0.70 -20.59 5.95 22.27 0.13 -20.46 16 10 C -0.02 -0.55 9.45 22.27 0.21 -0.34 16 11 C -0.15 -5.49 9.70 22.27 0.22 -5.28 16 12 C 0.00 -0.11 5.07 -19.87 -0.10 -0.21 16 13 C 0.05 2.48 5.10 29.10 0.15 2.63 16 14 C -0.54 -29.83 9.09 25.60 0.23 -29.60 16 15 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 16 C 0.01 0.59 5.46 84.65 0.46 1.05 16 17 N -0.92 -54.16 13.29 21.45 0.28 -53.88 16 18 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C -0.16 -5.88 9.70 22.27 0.22 -5.66 16 23 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 24 C 0.10 1.38 3.58 30.59 0.11 1.49 16 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 26 C -0.19 -2.10 9.30 71.98 0.67 -1.43 16 27 O -0.57 -7.98 13.13 -148.98 -1.96 -9.94 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.04 0.69 7.45 -2.39 -0.02 0.68 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.55 7.02 -2.39 -0.02 0.53 16 32 H 0.10 0.54 6.33 -2.39 -0.02 0.53 16 33 H 0.43 6.04 8.89 -96.74 -0.86 5.18 16 34 H 0.16 3.72 7.61 -2.91 -0.02 3.70 16 35 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.02 0.81 8.09 -2.38 -0.02 0.79 16 37 H 0.01 0.63 8.09 -2.39 -0.02 0.61 16 38 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.15 4.11 7.62 -2.91 -0.02 4.09 16 41 H 0.09 0.55 6.45 -2.39 -0.02 0.54 16 42 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.39 2.40 7.32 -74.05 -0.54 1.86 16 Total: -1.00 -72.00 374.61 -2.00 -74.00 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.38 Total: 17.05 kcal Atomic # 6 Polarization: -62.60 SS G_CDS: 3.42 Total: -59.18 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -0.54 Total: -73.43 kcal Atomic # 8 Polarization: -65.72 SS G_CDS: -6.22 Total: -71.94 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 68.21 SS G_CDS: -0.32 Total: 67.90 kcal Total: -72.00 -2.00 -74.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885218686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.430 kcal (2) G-P(sol) polarization free energy of solvation -71.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds