Wall clock time and date at job start Tue Mar 31 2020 14:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38089 * 120.46577 * 2 1 4 4 N 1.31850 * 120.93711 * 180.25572 * 3 2 1 5 5 C 1.31991 * 122.02266 * 359.42824 * 4 3 2 6 6 F 1.35095 * 119.58633 * 180.29745 * 5 4 3 7 7 C 1.38484 * 120.83143 * 0.56884 * 5 4 3 8 8 C 1.39772 * 118.97023 * 359.72313 * 7 5 4 9 9 C 1.48056 * 120.91090 * 179.97438 * 8 7 5 10 10 O 1.21429 * 120.00001 * 186.06441 * 9 8 7 11 11 O 1.34667 * 120.00298 * 6.06522 * 9 8 7 12 12 C 1.45200 * 117.00458 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47162 * 180.02562 * 12 11 9 14 14 O 1.42897 * 109.47000 * 65.00424 * 13 12 11 15 15 C 1.42904 * 113.99516 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.46640 * 179.97438 * 15 14 13 17 17 O 1.42898 * 109.47288 * 65.00309 * 16 15 14 18 18 C 1.42898 * 114.00407 * 179.97438 * 17 16 15 19 19 C 1.50693 * 109.47221 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00530 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99841 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00280 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99878 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47312 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46763 * 120.00359 * 23 21 19 26 26 H 1.48504 * 109.47428 * 240.00050 * 23 21 19 27 27 H 1.09008 * 109.47102 * 96.32554 * 1 2 3 28 28 H 1.09001 * 109.47146 * 216.32011 * 1 2 3 29 29 H 1.08997 * 109.47459 * 336.32691 * 1 2 3 30 30 H 1.07998 * 119.53559 * 359.97086 * 3 2 1 31 31 H 1.07996 * 120.51333 * 179.70561 * 7 5 4 32 32 H 1.08999 * 109.47144 * 300.00572 * 12 11 9 33 33 H 1.09005 * 109.46677 * 59.99971 * 12 11 9 34 34 H 1.09002 * 109.46412 * 185.00653 * 13 12 11 35 35 H 1.09000 * 109.47161 * 305.00013 * 13 12 11 36 36 H 1.08994 * 109.47152 * 300.00170 * 15 14 13 37 37 H 1.09005 * 109.47238 * 60.00329 * 15 14 13 38 38 H 1.09007 * 109.46788 * 184.99849 * 16 15 14 39 39 H 1.09002 * 109.47367 * 304.99984 * 16 15 14 40 40 H 1.08997 * 109.47321 * 300.00176 * 18 17 16 41 41 H 1.09005 * 109.46959 * 59.99862 * 18 17 16 42 42 H 0.96995 * 120.00348 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2071 1.1902 0.0000 4 7 3.5256 1.2011 -0.0050 5 6 4.2347 0.0878 0.0009 6 9 5.5839 0.1564 0.0014 7 6 3.6130 -1.1496 0.0010 8 6 2.2164 -1.2057 0.0006 9 6 1.5074 -2.5054 0.0001 10 8 0.2987 -2.5376 -0.1114 11 8 2.2030 -3.6520 0.1232 12 6 1.4422 -4.8887 0.1153 13 6 2.3963 -6.0754 0.2652 14 8 3.0216 -6.0245 1.5491 15 6 3.9370 -7.0945 1.7924 16 6 4.5437 -6.9390 3.1883 17 8 3.5185 -7.0874 4.1726 18 6 3.9817 -6.9596 5.5184 19 6 2.8235 -7.1322 6.4669 20 1 1.8328 -7.3210 6.0807 21 6 3.0287 -7.0490 7.8278 22 7 4.2351 -6.8186 8.2981 23 14 1.5928 -7.2622 9.0035 24 1 0.3506 -7.5091 8.2282 25 1 1.8542 -8.4171 9.8997 26 1 1.4323 -6.0305 9.8174 27 1 -0.3634 -0.1132 -1.0215 28 1 -0.3633 -0.8280 0.6087 29 1 -0.3634 0.9411 0.4126 30 1 1.6672 2.1255 -0.0005 31 1 4.1983 -2.0573 0.0010 32 1 0.7343 -4.8851 0.9440 33 1 0.8992 -4.9752 -0.8260 34 1 1.8365 -7.0058 0.1702 35 1 3.1587 -6.0291 -0.5124 36 1 3.4089 -8.0459 1.7293 37 1 4.7315 -7.0698 1.0465 38 1 5.3064 -7.7028 3.3402 39 1 4.9954 -5.9512 3.2802 40 1 4.7326 -7.7240 5.7183 41 1 4.4220 -5.9724 5.6589 42 1 4.3795 -6.7604 9.2555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893261153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:03 Heat of formation + Delta-G solvation = -181.641406 kcal Electronic energy + Delta-G solvation = -26745.061399 eV Core-core repulsion = 22412.748135 eV Total energy + Delta-G solvation = -4332.313264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.34803 -41.32190 -39.99050 -38.15259 -36.93243 -36.22819 -33.96075 -32.82657 -32.69968 -31.08432 -28.98814 -27.66843 -26.76933 -25.77180 -23.52165 -22.55065 -22.41941 -21.94238 -21.58313 -19.04693 -18.07113 -17.31341 -17.24387 -16.55754 -16.47132 -16.34669 -16.09070 -16.02036 -15.76621 -14.98654 -14.75363 -14.56349 -14.44750 -14.20354 -14.13653 -14.07407 -13.42301 -13.24949 -12.90324 -12.80570 -12.71263 -12.42422 -12.13601 -11.82196 -11.66316 -11.22565 -10.96667 -10.93034 -10.81173 -10.78494 -10.55237 -10.50807 -10.11529 -10.00441 -9.55883 -9.29083 -9.07882 -8.83234 -8.16785 -6.10013 -4.11374 -0.02667 0.37699 2.05975 2.16733 3.05768 3.09338 3.29875 3.36181 3.42923 3.63727 3.84139 4.18178 4.20798 4.25490 4.35361 4.66259 4.83498 4.84410 4.88261 4.91976 5.08243 5.13147 5.18292 5.26458 5.26651 5.31909 5.34907 5.47541 5.54487 5.57365 5.79656 5.98524 5.99271 6.01360 6.15378 6.20387 7.06235 7.09960 7.25234 7.33027 7.43961 7.80928 8.16186 8.58395 9.02264 9.53380 11.01689 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.002484 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.995464 B =11271.108918 C =11705.005835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C 0.131 3.869 4 N -0.488 5.488 5 C 0.294 3.706 6 F -0.106 7.106 7 C -0.131 4.131 8 C -0.054 4.054 9 C 0.512 3.488 10 O -0.488 6.488 11 O -0.338 6.338 12 C 0.072 3.928 13 C 0.060 3.940 14 O -0.368 6.368 15 C 0.069 3.931 16 C 0.063 3.937 17 O -0.390 6.390 18 C 0.194 3.806 19 C -0.513 4.513 20 H 0.067 0.933 21 C 0.055 3.945 22 N -0.899 5.899 23 Si 0.908 3.092 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.178 0.822 31 H 0.166 0.834 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.005 0.995 41 H 0.006 0.994 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 11.397 -23.154 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.086 4.086 3 C -0.027 4.027 4 N -0.203 5.203 5 C 0.142 3.858 6 F -0.085 7.085 7 C -0.152 4.152 8 C -0.063 4.063 9 C 0.355 3.645 10 O -0.377 6.377 11 O -0.254 6.254 12 C -0.001 4.001 13 C -0.017 4.017 14 O -0.287 6.287 15 C -0.008 4.008 16 C -0.015 4.015 17 O -0.309 6.309 18 C 0.120 3.880 19 C -0.551 4.551 20 H 0.085 0.915 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.735 3.265 24 H -0.195 1.195 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.195 0.805 31 H 0.184 0.816 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.701 12.227 -22.924 26.243 hybrid contribution -0.314 -1.082 0.642 1.296 sum -4.015 11.146 -22.282 25.235 Atomic orbital electron populations 1.21044 0.88078 1.04298 1.04151 1.21179 0.99065 0.91843 0.96547 1.22500 0.87165 0.97871 0.95123 1.66877 1.09652 1.31108 1.12628 1.17938 0.79070 0.89360 0.99473 1.91668 1.26700 1.96845 1.93255 1.22208 0.94566 0.99008 0.99396 1.19201 0.92627 0.91277 1.03176 1.20763 0.85608 0.84531 0.73558 1.90818 1.14463 1.87621 1.44758 1.86573 1.41370 1.14743 1.82686 1.23258 0.94027 0.79404 1.03400 1.22511 0.95966 0.95782 0.87416 1.88103 1.59612 1.48577 1.32445 1.22603 0.91844 0.90114 0.96215 1.22258 0.91425 0.99970 0.87836 1.87905 1.33066 1.93162 1.16807 1.20213 0.95904 0.95326 0.76572 1.21094 0.95063 1.48780 0.90171 0.91507 1.24957 0.96349 0.95196 0.98075 1.69970 1.20735 1.49499 1.13631 0.86284 0.82108 0.77724 0.80400 1.19473 1.20849 1.20818 0.89838 0.88473 0.90952 0.80480 0.81630 0.89439 0.89422 0.90706 0.92386 0.92619 0.92637 0.92906 0.93600 0.97754 0.97651 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 8.84 36.00 0.32 -0.54 16 2 C -0.08 -0.72 5.93 -104.06 -0.62 -1.34 16 3 C 0.13 1.05 10.83 -17.60 -0.19 0.86 16 4 N -0.49 -5.18 10.35 -13.64 -0.14 -5.32 16 5 C 0.29 3.18 8.41 -17.39 -0.15 3.03 16 6 F -0.11 -1.20 17.29 2.25 0.04 -1.16 16 7 C -0.13 -1.30 9.68 -38.92 -0.38 -1.68 16 8 C -0.05 -0.55 5.91 -104.68 -0.62 -1.17 16 9 C 0.51 5.93 7.86 34.76 0.27 6.20 16 10 O -0.49 -6.11 13.32 -19.21 -0.26 -6.37 16 11 O -0.34 -4.04 9.56 -43.18 -0.41 -4.46 16 12 C 0.07 0.77 5.85 37.16 0.22 0.99 16 13 C 0.06 0.65 6.33 37.16 0.24 0.88 16 14 O -0.37 -5.85 10.28 -48.79 -0.50 -6.35 16 15 C 0.07 1.01 6.32 37.16 0.23 1.24 16 16 C 0.06 1.18 6.32 37.16 0.23 1.41 16 17 O -0.39 -9.68 10.29 -40.09 -0.41 -10.09 16 18 C 0.19 5.44 5.69 36.00 0.20 5.65 16 19 C -0.51 -15.41 9.43 -34.44 -0.32 -15.73 16 20 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 23 Si 0.91 22.11 29.54 -169.99 -5.02 17.09 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.10 0.91 5.95 -51.93 -0.31 0.60 16 29 H 0.07 0.35 8.05 -51.93 -0.42 -0.07 16 30 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 31 H 0.17 1.47 7.72 -52.49 -0.41 1.06 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -35.25 373.54 -6.74 -42.00 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -5.75 Total: -5.80 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -0.65 Total: 1.32 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.60 Total: -31.81 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.58 Total: -27.26 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.25 -6.74 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893261153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.646 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds