Wall clock time and date at job start Tue Mar 31 2020 14:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38089 * 120.46577 * 2 1 4 4 N 1.31850 * 120.93711 * 180.25572 * 3 2 1 5 5 C 1.31991 * 122.02266 * 359.42824 * 4 3 2 6 6 F 1.35095 * 119.58633 * 180.29745 * 5 4 3 7 7 C 1.38484 * 120.83143 * 0.56884 * 5 4 3 8 8 C 1.39772 * 118.97023 * 359.72313 * 7 5 4 9 9 C 1.48056 * 120.91090 * 179.97438 * 8 7 5 10 10 O 1.21429 * 120.00001 * 186.06441 * 9 8 7 11 11 O 1.34667 * 120.00298 * 6.06522 * 9 8 7 12 12 C 1.45200 * 117.00458 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47162 * 180.02562 * 12 11 9 14 14 O 1.42897 * 109.47000 * 65.00424 * 13 12 11 15 15 C 1.42904 * 113.99516 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.46640 * 179.97438 * 15 14 13 17 17 O 1.42898 * 109.47288 * 65.00309 * 16 15 14 18 18 C 1.42898 * 114.00407 * 179.97438 * 17 16 15 19 19 C 1.50693 * 109.47221 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00530 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99841 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00280 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99878 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47312 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46763 * 120.00359 * 23 21 19 26 26 H 1.48504 * 109.47428 * 240.00050 * 23 21 19 27 27 H 1.09008 * 109.47102 * 96.32554 * 1 2 3 28 28 H 1.09001 * 109.47146 * 216.32011 * 1 2 3 29 29 H 1.08997 * 109.47459 * 336.32691 * 1 2 3 30 30 H 1.07998 * 119.53559 * 359.97086 * 3 2 1 31 31 H 1.07996 * 120.51333 * 179.70561 * 7 5 4 32 32 H 1.08999 * 109.47144 * 300.00572 * 12 11 9 33 33 H 1.09005 * 109.46677 * 59.99971 * 12 11 9 34 34 H 1.09002 * 109.46412 * 185.00653 * 13 12 11 35 35 H 1.09000 * 109.47161 * 305.00013 * 13 12 11 36 36 H 1.08994 * 109.47152 * 300.00170 * 15 14 13 37 37 H 1.09005 * 109.47238 * 60.00329 * 15 14 13 38 38 H 1.09007 * 109.46788 * 184.99849 * 16 15 14 39 39 H 1.09002 * 109.47367 * 304.99984 * 16 15 14 40 40 H 1.08997 * 109.47321 * 300.00176 * 18 17 16 41 41 H 1.09005 * 109.46959 * 59.99862 * 18 17 16 42 42 H 0.96995 * 120.00348 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2071 1.1902 0.0000 4 7 3.5256 1.2011 -0.0050 5 6 4.2347 0.0878 0.0009 6 9 5.5839 0.1564 0.0014 7 6 3.6130 -1.1496 0.0010 8 6 2.2164 -1.2057 0.0006 9 6 1.5074 -2.5054 0.0001 10 8 0.2987 -2.5376 -0.1114 11 8 2.2030 -3.6520 0.1232 12 6 1.4422 -4.8887 0.1153 13 6 2.3963 -6.0754 0.2652 14 8 3.0216 -6.0245 1.5491 15 6 3.9370 -7.0945 1.7924 16 6 4.5437 -6.9390 3.1883 17 8 3.5185 -7.0874 4.1726 18 6 3.9817 -6.9596 5.5184 19 6 2.8235 -7.1322 6.4669 20 1 1.8328 -7.3210 6.0807 21 6 3.0287 -7.0490 7.8278 22 7 4.2351 -6.8186 8.2981 23 14 1.5928 -7.2622 9.0035 24 1 0.3506 -7.5091 8.2282 25 1 1.8542 -8.4171 9.8997 26 1 1.4323 -6.0305 9.8174 27 1 -0.3634 -0.1132 -1.0215 28 1 -0.3633 -0.8280 0.6087 29 1 -0.3634 0.9411 0.4126 30 1 1.6672 2.1255 -0.0005 31 1 4.1983 -2.0573 0.0010 32 1 0.7343 -4.8851 0.9440 33 1 0.8992 -4.9752 -0.8260 34 1 1.8365 -7.0058 0.1702 35 1 3.1587 -6.0291 -0.5124 36 1 3.4089 -8.0459 1.7293 37 1 4.7315 -7.0698 1.0465 38 1 5.3064 -7.7028 3.3402 39 1 4.9954 -5.9512 3.2802 40 1 4.7326 -7.7240 5.7183 41 1 4.4220 -5.9724 5.6589 42 1 4.3795 -6.7604 9.2555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893261153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:02 Heat of formation + Delta-G solvation = -204.830876 kcal Electronic energy + Delta-G solvation = -26746.066969 eV Core-core repulsion = 22412.748135 eV Total energy + Delta-G solvation = -4333.318835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.17844 -42.13424 -40.79963 -39.35606 -38.26475 -37.56165 -34.95948 -34.70522 -33.50133 -32.19143 -30.39595 -28.80632 -28.32817 -26.55048 -24.56802 -24.29422 -23.39129 -23.32627 -22.42551 -19.87140 -18.88936 -18.68629 -18.22092 -18.15257 -17.64072 -17.45229 -17.18420 -17.05920 -16.65103 -16.47229 -16.10355 -15.93425 -15.75784 -15.21467 -15.05632 -14.92194 -14.71190 -14.35479 -14.04296 -13.72970 -13.45418 -13.44342 -13.36525 -13.14746 -13.03887 -12.76364 -12.69709 -12.44201 -12.25700 -11.93182 -11.79334 -11.66534 -11.31376 -11.29761 -10.90835 -10.88169 -10.57102 -10.26040 -9.99889 -8.34279 -6.46835 -0.80807 -0.34210 1.21243 1.35002 1.38423 1.40260 1.55010 2.31464 2.33416 2.35343 2.65102 2.99299 3.09476 3.18226 3.47526 3.51896 3.54870 3.83606 4.07601 4.13456 4.14249 4.19006 4.22956 4.33086 4.45079 4.52409 4.55556 4.58279 4.61611 4.67349 4.75905 4.77686 4.88360 4.98138 5.06560 5.15208 5.26650 5.45115 5.52781 5.93773 6.24713 6.34453 6.44377 6.52099 6.80169 7.25243 8.78400 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.002484 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.995464 B =11271.108918 C =11705.005835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C 0.140 3.860 4 N -0.506 5.506 5 C 0.277 3.723 6 F -0.115 7.115 7 C -0.131 4.131 8 C -0.071 4.071 9 C 0.511 3.489 10 O -0.501 6.501 11 O -0.348 6.348 12 C 0.068 3.932 13 C 0.057 3.943 14 O -0.409 6.409 15 C 0.076 3.924 16 C 0.048 3.952 17 O -0.407 6.407 18 C 0.208 3.792 19 C -0.549 4.549 20 H 0.060 0.940 21 C 0.005 3.995 22 N -0.930 5.930 23 Si 0.984 3.016 24 H -0.265 1.265 25 H -0.268 1.268 26 H -0.272 1.272 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.218 0.782 31 H 0.170 0.830 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.039 0.961 40 H -0.009 1.009 41 H -0.019 1.019 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 11.687 -23.870 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.018 4.018 4 N -0.220 5.220 5 C 0.125 3.875 6 F -0.094 7.094 7 C -0.152 4.152 8 C -0.079 4.079 9 C 0.355 3.645 10 O -0.391 6.391 11 O -0.265 6.265 12 C -0.005 4.005 13 C -0.019 4.019 14 O -0.329 6.329 15 C 0.000 4.000 16 C -0.029 4.029 17 O -0.327 6.327 18 C 0.133 3.867 19 C -0.587 4.587 20 H 0.078 0.922 21 C -0.193 4.193 22 N -0.570 5.570 23 Si 0.807 3.193 24 H -0.189 1.189 25 H -0.193 1.193 26 H -0.197 1.197 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.234 0.766 31 H 0.188 0.812 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.009 0.991 41 H -0.001 1.001 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.049 12.507 -23.670 27.243 hybrid contribution 0.121 -1.131 0.776 1.377 sum -4.928 11.375 -22.894 26.035 Atomic orbital electron populations 1.21061 0.86846 1.04959 1.04379 1.21463 0.99911 0.91470 0.95197 1.23141 0.86334 0.99064 0.93223 1.66933 1.10842 1.31112 1.13143 1.18047 0.78896 0.89834 1.00694 1.91636 1.27345 1.96912 1.93477 1.22193 0.94608 0.98971 0.99408 1.19311 0.92838 0.91371 1.04408 1.20988 0.85549 0.84831 0.73114 1.90809 1.14913 1.87824 1.45544 1.86572 1.41908 1.15273 1.82702 1.23413 0.93896 0.79141 1.04035 1.22787 0.96666 0.96558 0.85873 1.88040 1.60344 1.49143 1.35365 1.22583 0.93095 0.90182 0.94179 1.22691 0.91236 1.00219 0.88731 1.87852 1.35484 1.93197 1.16186 1.19831 0.95007 0.93341 0.78505 1.21415 0.95281 1.50450 0.91542 0.92189 1.25989 0.99625 0.93968 0.99714 1.70072 1.22957 1.49326 1.14606 0.85120 0.78101 0.78376 0.77702 1.18872 1.19332 1.19672 0.89004 0.90703 0.88007 0.76605 0.81245 0.91480 0.86594 0.88589 0.89887 0.91803 0.88439 0.91213 0.94284 0.99141 1.00091 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.84 71.24 0.63 -0.83 16 2 C -0.08 -1.24 5.93 -19.50 -0.12 -1.36 16 3 C 0.14 1.96 10.83 84.65 0.92 2.88 16 4 N -0.51 -10.28 10.35 -197.08 -2.04 -12.32 16 5 C 0.28 6.02 8.41 84.73 0.71 6.73 16 6 F -0.11 -2.67 17.29 44.97 0.78 -1.89 16 7 C -0.13 -2.64 9.68 22.70 0.22 -2.42 16 8 C -0.07 -1.43 5.91 -19.90 -0.12 -1.55 16 9 C 0.51 11.85 7.86 70.43 0.55 12.40 16 10 O -0.50 -12.51 13.32 20.07 0.27 -12.24 16 11 O -0.35 -8.30 9.56 -53.10 -0.51 -8.81 16 12 C 0.07 1.41 5.85 71.98 0.42 1.83 16 13 C 0.06 1.13 6.33 71.98 0.46 1.58 16 14 O -0.41 -12.70 10.28 -136.02 -1.40 -14.10 16 15 C 0.08 2.10 6.32 71.98 0.45 2.56 16 16 C 0.05 1.81 6.32 71.98 0.45 2.26 16 17 O -0.41 -20.75 10.29 -144.34 -1.49 -22.24 16 18 C 0.21 12.11 5.69 71.23 0.41 12.52 16 19 C -0.55 -33.74 9.43 25.60 0.24 -33.50 16 20 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 21 C 0.01 0.32 5.46 84.65 0.46 0.78 16 22 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 23 Si 0.98 45.16 29.54 68.60 2.03 47.19 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.07 1.35 5.95 -2.39 -0.01 1.34 16 29 H 0.10 0.67 8.05 -2.39 -0.02 0.66 16 30 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.17 3.12 7.72 -2.91 -0.02 3.10 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -78.08 373.54 4.65 -73.43 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.03 Total: 3.67 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 5.69 Total: 3.89 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -1.75 Total: -68.90 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -3.12 Total: -57.39 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -78.08 4.65 -73.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893261153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.400 kcal (2) G-P(sol) polarization free energy of solvation -78.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds