Wall clock time and date at job start Tue Mar 31 2020 14:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47248 * 2 1 4 4 C 1.50701 * 109.47507 * 185.05924 * 3 2 1 5 5 C 1.38258 * 119.99862 * 263.26308 * 4 3 2 6 6 C 1.38208 * 119.99786 * 179.73995 * 5 4 3 7 7 C 1.38251 * 120.00333 * 0.55261 * 6 5 4 8 8 C 1.38226 * 119.99706 * 359.70151 * 7 6 5 9 9 C 1.38204 * 119.99901 * 83.53142 * 4 3 2 10 10 S 1.76198 * 120.00250 * 0.02562 * 9 4 3 11 11 O 1.42101 * 106.40104 * 279.60167 * 10 9 4 12 12 O 1.42102 * 106.40266 * 52.52486 * 10 9 4 13 13 N 1.65606 * 107.22135 * 166.06699 * 10 9 4 14 14 C 1.36936 * 119.99677 * 275.31579 * 13 10 9 15 15 H 1.08007 * 120.00321 * 357.68349 * 14 13 10 16 16 C 1.38811 * 120.00095 * 177.68636 * 14 13 10 17 17 N 1.31622 * 119.99896 * 4.81428 * 16 14 13 18 18 Si 1.86794 * 120.00289 * 184.81224 * 16 14 13 19 19 H 1.48506 * 109.47214 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47459 * 119.99887 * 18 16 14 21 21 H 1.48503 * 109.47461 * 240.00035 * 18 16 14 22 22 C 1.46498 * 120.00142 * 95.30899 * 13 10 9 23 23 C 1.53003 * 109.46804 * 93.90028 * 22 13 10 24 24 O 1.42896 * 109.47269 * 64.99642 * 23 22 13 25 25 C 1.42900 * 113.99710 * 180.02562 * 24 23 22 26 26 H 1.08994 * 109.47038 * 175.04497 * 1 2 3 27 27 H 1.08998 * 109.47018 * 295.04738 * 1 2 3 28 28 H 1.09001 * 109.46713 * 55.04377 * 1 2 3 29 29 H 1.08997 * 109.47415 * 119.99931 * 2 1 3 30 30 H 1.09005 * 109.47071 * 240.00500 * 2 1 3 31 31 H 1.09009 * 109.47188 * 305.05942 * 3 2 1 32 32 H 1.09005 * 109.47160 * 65.05453 * 3 2 1 33 33 H 1.08005 * 120.00067 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.00208 * 180.27441 * 6 5 4 35 35 H 1.07999 * 120.00938 * 179.72349 * 7 6 5 36 36 H 1.07996 * 120.00084 * 179.97438 * 8 7 6 37 37 H 0.96999 * 120.00056 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.47375 * 213.89272 * 22 13 10 39 39 H 1.08993 * 109.47212 * 333.89849 * 22 13 10 40 40 H 1.08997 * 109.47055 * 185.00065 * 23 22 13 41 41 H 1.09010 * 109.46893 * 304.99454 * 23 22 13 42 42 H 1.09003 * 109.47200 * 299.99801 * 25 24 23 43 43 H 1.08998 * 109.47687 * 60.00303 * 25 24 23 44 44 H 1.09000 * 109.47223 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5418 1.4444 -0.1253 5 6 4.3297 1.5507 1.0058 6 6 5.7071 1.5471 0.8914 7 6 6.2970 1.4486 -0.3551 8 6 5.5092 1.3476 -1.4864 9 6 4.1314 1.3454 -1.3714 10 16 3.1273 1.2177 -2.8135 11 8 2.7222 -0.1415 -2.9014 12 8 2.2087 2.3006 -2.7601 13 7 4.1063 1.4991 -4.1192 14 6 4.3542 2.7833 -4.5249 15 1 3.8816 3.6109 -4.0169 16 6 5.2130 3.0213 -5.5893 17 7 5.7145 2.0118 -6.2687 18 14 5.6567 4.7744 -6.0573 19 1 4.9667 5.7204 -5.1439 20 1 7.1257 4.9604 -5.9440 21 1 5.2310 5.0364 -7.4557 22 6 4.7074 0.3742 -4.8400 23 6 3.8153 -0.0087 -6.0227 24 8 3.7816 1.0676 -6.9620 25 6 2.9710 0.8114 -8.1106 26 1 -0.3633 -1.0238 -0.0888 27 1 -0.3633 0.4351 0.9310 28 1 -0.3633 0.5888 -0.8423 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.6046 1.9819 -0.8413 32 1 1.7525 1.9295 0.9318 33 1 3.8689 1.6328 1.9792 34 1 6.3226 1.6256 1.7753 35 1 7.3732 1.4502 -0.4450 36 1 5.9699 1.2711 -2.4602 37 1 6.3149 2.1781 -7.0122 38 1 5.6926 0.6622 -5.2065 39 1 4.8047 -0.4779 -4.1675 40 1 4.2152 -0.9002 -6.5057 41 1 2.8055 -0.2111 -5.6655 42 1 3.3530 -0.0632 -8.6372 43 1 1.9437 0.6264 -7.7965 44 1 2.9982 1.6754 -8.7746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903149965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:12 Heat of formation + Delta-G solvation = -61.777530 kcal Electronic energy + Delta-G solvation = -27857.357489 eV Core-core repulsion = 24096.455089 eV Total energy + Delta-G solvation = -3760.902400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -38.97585 -37.12596 -35.93610 -35.38346 -35.02657 -34.27453 -31.35636 -30.79430 -30.65721 -28.70737 -26.18069 -25.46900 -24.15841 -22.66801 -21.98819 -21.34283 -20.59377 -18.53022 -17.60234 -16.69810 -16.49975 -15.44581 -15.35660 -14.84535 -14.70277 -14.54820 -14.19545 -14.16959 -14.04360 -13.79194 -13.49255 -13.23960 -13.14572 -12.27977 -12.10018 -12.04213 -11.87360 -11.77839 -11.46976 -11.36521 -11.14981 -11.06335 -11.00236 -10.89811 -10.73280 -10.59041 -10.45990 -10.33568 -10.13782 -10.11127 -9.75266 -9.64197 -9.18034 -8.76863 -8.40966 -8.38679 -8.01705 -5.94807 -3.70916 1.40370 1.61344 1.71823 3.23004 3.30271 3.35130 3.94983 4.06713 4.43689 4.74573 4.91093 4.96256 5.11217 5.25626 5.29911 5.32745 5.33965 5.50414 5.66340 5.75795 5.79898 5.89464 6.01949 6.03230 6.08017 6.11272 6.18370 6.21617 6.27485 6.32796 6.40642 6.42700 6.46417 6.49909 6.61103 6.65095 6.69944 6.73822 6.80808 7.14552 7.32176 7.42362 7.88547 8.51923 8.55810 8.95074 9.33192 10.74481 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.005681 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.898343 B = 4927.409054 C = 5936.271642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.138 4.138 3 C -0.130 4.130 4 C 0.007 3.993 5 C -0.147 4.147 6 C -0.088 4.088 7 C -0.150 4.150 8 C -0.023 4.023 9 C -0.659 4.659 10 S 2.595 3.405 11 O -0.989 6.989 12 O -0.975 6.975 13 N -0.819 5.819 14 C -0.275 4.275 15 H 0.107 0.893 16 C 0.051 3.949 17 N -0.819 5.819 18 Si 0.918 3.082 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.100 3.900 23 C 0.077 3.923 24 O -0.308 6.308 25 C 0.019 3.981 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.264 0.736 38 H 0.163 0.837 39 H 0.044 0.956 40 H 0.031 0.969 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.020 0.980 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 -3.003 6.507 7.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.168 4.168 4 C 0.006 3.994 5 C -0.165 4.165 6 C -0.106 4.106 7 C -0.168 4.168 8 C -0.041 4.041 9 C -0.737 4.737 10 S 2.688 3.312 11 O -0.978 6.978 12 O -0.964 6.964 13 N -0.648 5.648 14 C -0.414 4.414 15 H 0.125 0.875 16 C -0.157 4.157 17 N -0.462 5.462 18 Si 0.745 3.255 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.026 4.026 23 C -0.002 4.002 24 O -0.224 6.224 25 C -0.079 4.079 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.156 0.844 37 H 0.076 0.924 38 H 0.179 0.821 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.633 -3.128 6.582 7.315 hybrid contribution 0.706 0.641 0.197 0.974 sum 0.073 -2.487 6.779 7.221 Atomic orbital electron populations 1.21765 0.95518 1.01770 1.01737 1.21765 0.96276 0.95636 1.03849 1.21332 0.91256 0.98735 1.05431 1.19426 0.95212 0.92871 0.91941 1.21045 0.93903 1.03735 0.97847 1.21200 0.94768 0.97246 0.97364 1.21213 0.99759 1.02952 0.92913 1.20984 0.91886 0.91880 0.99376 1.32197 1.09528 1.11919 1.20038 1.07522 0.77943 0.73199 0.72491 1.93403 1.82362 1.35536 1.86505 1.93389 1.61864 1.54817 1.86359 1.53586 1.67463 1.11691 1.32103 1.19548 1.24739 0.82735 1.14428 0.87488 1.25134 0.95956 0.98620 0.95943 1.69508 1.29736 1.28279 1.18653 0.85999 0.78088 0.82655 0.78733 1.19419 1.20831 1.20654 1.22306 1.04171 0.85704 0.90402 1.22467 0.97388 0.88948 0.91445 1.88722 1.66295 1.37960 1.29385 1.22657 0.94280 0.99708 0.91282 0.92551 0.93016 0.92240 0.91970 0.89468 0.87752 0.90274 0.86260 0.86329 0.85992 0.84423 0.92359 0.82106 0.93811 0.95119 0.96086 0.96070 0.96122 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.14 -2.26 5.88 -26.73 -0.16 -2.42 16 3 C -0.13 -2.28 4.78 -27.88 -0.13 -2.41 16 4 C 0.01 0.13 5.13 -104.63 -0.54 -0.41 16 5 C -0.15 -2.33 9.68 -39.58 -0.38 -2.71 16 6 C -0.09 -1.30 10.05 -39.59 -0.40 -1.69 16 7 C -0.15 -2.40 10.05 -39.58 -0.40 -2.80 16 8 C -0.02 -0.43 9.57 -39.58 -0.38 -0.81 16 9 C -0.66 -13.66 5.83 -39.59 -0.23 -13.89 16 10 S 2.60 60.32 4.58 -107.50 -0.49 59.82 16 11 O -0.99 -23.64 14.80 -57.17 -0.85 -24.48 16 12 O -0.97 -24.73 14.64 -57.17 -0.84 -25.56 16 13 N -0.82 -19.41 1.93 -59.91 -0.12 -19.52 16 14 C -0.28 -6.85 9.26 -15.06 -0.14 -6.99 16 15 H 0.11 2.74 7.28 -52.48 -0.38 2.36 16 16 C 0.05 1.22 4.79 -17.43 -0.08 1.14 16 17 N -0.82 -19.21 6.72 55.49 0.37 -18.84 16 18 Si 0.92 19.32 29.56 -169.99 -5.02 14.30 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 C 0.10 2.21 5.11 -4.04 -0.02 2.19 16 23 C 0.08 1.68 6.19 37.16 0.23 1.91 16 24 O -0.31 -7.02 6.82 -35.23 -0.24 -7.26 16 25 C 0.02 0.35 11.01 101.05 1.11 1.46 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.66 5.83 -51.93 -0.30 1.36 16 31 H 0.10 2.07 5.33 -51.92 -0.28 1.79 16 32 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 33 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.14 2.60 7.13 -52.49 -0.37 2.22 16 37 H 0.26 5.95 8.31 -40.82 -0.34 5.61 16 38 H 0.16 3.68 4.98 -66.14 -0.33 3.35 16 39 H 0.04 0.90 7.50 -51.93 -0.39 0.51 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -28.66 359.44 -9.59 -38.26 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.68 Total: 7.05 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -1.15 Total: -29.19 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.26 Total: -38.36 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: -1.92 Total: -57.30 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 16 Polarization: 60.32 SS G_CDS: -0.49 Total: 59.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.66 -9.59 -38.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903149965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.520 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds