Wall clock time and date at job start Tue Mar 31 2020 14:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47248 * 2 1 4 4 C 1.50701 * 109.47507 * 185.05924 * 3 2 1 5 5 C 1.38258 * 119.99862 * 263.26308 * 4 3 2 6 6 C 1.38208 * 119.99786 * 179.73995 * 5 4 3 7 7 C 1.38251 * 120.00333 * 0.55261 * 6 5 4 8 8 C 1.38226 * 119.99706 * 359.70151 * 7 6 5 9 9 C 1.38204 * 119.99901 * 83.53142 * 4 3 2 10 10 S 1.76198 * 120.00250 * 0.02562 * 9 4 3 11 11 O 1.42101 * 106.40104 * 279.60167 * 10 9 4 12 12 O 1.42102 * 106.40266 * 52.52486 * 10 9 4 13 13 N 1.65606 * 107.22135 * 166.06699 * 10 9 4 14 14 C 1.36936 * 119.99677 * 275.31579 * 13 10 9 15 15 H 1.08007 * 120.00321 * 357.68349 * 14 13 10 16 16 C 1.38811 * 120.00095 * 177.68636 * 14 13 10 17 17 N 1.31622 * 119.99896 * 4.81428 * 16 14 13 18 18 Si 1.86794 * 120.00289 * 184.81224 * 16 14 13 19 19 H 1.48506 * 109.47214 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47459 * 119.99887 * 18 16 14 21 21 H 1.48503 * 109.47461 * 240.00035 * 18 16 14 22 22 C 1.46498 * 120.00142 * 95.30899 * 13 10 9 23 23 C 1.53003 * 109.46804 * 93.90028 * 22 13 10 24 24 O 1.42896 * 109.47269 * 64.99642 * 23 22 13 25 25 C 1.42900 * 113.99710 * 180.02562 * 24 23 22 26 26 H 1.08994 * 109.47038 * 175.04497 * 1 2 3 27 27 H 1.08998 * 109.47018 * 295.04738 * 1 2 3 28 28 H 1.09001 * 109.46713 * 55.04377 * 1 2 3 29 29 H 1.08997 * 109.47415 * 119.99931 * 2 1 3 30 30 H 1.09005 * 109.47071 * 240.00500 * 2 1 3 31 31 H 1.09009 * 109.47188 * 305.05942 * 3 2 1 32 32 H 1.09005 * 109.47160 * 65.05453 * 3 2 1 33 33 H 1.08005 * 120.00067 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.00208 * 180.27441 * 6 5 4 35 35 H 1.07999 * 120.00938 * 179.72349 * 7 6 5 36 36 H 1.07996 * 120.00084 * 179.97438 * 8 7 6 37 37 H 0.96999 * 120.00056 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.47375 * 213.89272 * 22 13 10 39 39 H 1.08993 * 109.47212 * 333.89849 * 22 13 10 40 40 H 1.08997 * 109.47055 * 185.00065 * 23 22 13 41 41 H 1.09010 * 109.46893 * 304.99454 * 23 22 13 42 42 H 1.09003 * 109.47200 * 299.99801 * 25 24 23 43 43 H 1.08998 * 109.47687 * 60.00303 * 25 24 23 44 44 H 1.09000 * 109.47223 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5418 1.4444 -0.1253 5 6 4.3297 1.5507 1.0058 6 6 5.7071 1.5471 0.8914 7 6 6.2970 1.4486 -0.3551 8 6 5.5092 1.3476 -1.4864 9 6 4.1314 1.3454 -1.3714 10 16 3.1273 1.2177 -2.8135 11 8 2.7222 -0.1415 -2.9014 12 8 2.2087 2.3006 -2.7601 13 7 4.1063 1.4991 -4.1192 14 6 4.3542 2.7833 -4.5249 15 1 3.8816 3.6109 -4.0169 16 6 5.2130 3.0213 -5.5893 17 7 5.7145 2.0118 -6.2687 18 14 5.6567 4.7744 -6.0573 19 1 4.9667 5.7204 -5.1439 20 1 7.1257 4.9604 -5.9440 21 1 5.2310 5.0364 -7.4557 22 6 4.7074 0.3742 -4.8400 23 6 3.8153 -0.0087 -6.0227 24 8 3.7816 1.0676 -6.9620 25 6 2.9710 0.8114 -8.1106 26 1 -0.3633 -1.0238 -0.0888 27 1 -0.3633 0.4351 0.9310 28 1 -0.3633 0.5888 -0.8423 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.6046 1.9819 -0.8413 32 1 1.7525 1.9295 0.9318 33 1 3.8689 1.6328 1.9792 34 1 6.3226 1.6256 1.7753 35 1 7.3732 1.4502 -0.4450 36 1 5.9699 1.2711 -2.4602 37 1 6.3149 2.1781 -7.0122 38 1 5.6926 0.6622 -5.2065 39 1 4.8047 -0.4779 -4.1675 40 1 4.2152 -0.9002 -6.5057 41 1 2.8055 -0.2111 -5.6655 42 1 3.3530 -0.0632 -8.6372 43 1 1.9437 0.6264 -7.7965 44 1 2.9982 1.6754 -8.7746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903149965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:10 Heat of formation + Delta-G solvation = -78.126862 kcal Electronic energy + Delta-G solvation = -27858.066449 eV Core-core repulsion = 24096.455089 eV Total energy + Delta-G solvation = -3761.611360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -40.32375 -38.83523 -37.91462 -37.02655 -36.78288 -35.85976 -33.09605 -32.09919 -32.01989 -30.41998 -27.45595 -27.06613 -25.91089 -24.08131 -23.28852 -23.08049 -21.93957 -20.32334 -19.28716 -18.44474 -18.20710 -16.95651 -16.73578 -16.49147 -16.45896 -16.28376 -15.87173 -15.62481 -15.43153 -15.26571 -14.99568 -14.67028 -14.57831 -13.80730 -13.53247 -13.50821 -13.39425 -13.25501 -13.08488 -12.93614 -12.84868 -12.77188 -12.70681 -12.52134 -12.17117 -12.12042 -12.06545 -11.93546 -11.85290 -11.55164 -11.49507 -11.24360 -10.92899 -10.16764 -10.07652 -9.77190 -9.71584 -7.67400 -5.57164 -0.20323 0.01465 0.39280 1.52774 1.56318 1.65367 2.30337 2.61004 2.69033 2.94499 3.23969 3.57285 3.62559 3.80400 3.93468 4.03816 4.10478 4.17280 4.36371 4.42198 4.45881 4.49473 4.52785 4.62375 4.64630 4.70148 4.77051 4.78665 4.87336 4.88256 4.90401 4.99212 5.01657 5.15623 5.20585 5.28960 5.33657 5.39879 5.45083 5.46857 5.62112 6.02264 6.13588 6.75375 6.90558 7.17694 7.55431 9.02236 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.005681 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.898343 B = 4927.409054 C = 5936.271642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.139 4.139 3 C -0.135 4.135 4 C -0.011 4.011 5 C -0.143 4.143 6 C -0.070 4.070 7 C -0.150 4.150 8 C -0.041 4.041 9 C -0.687 4.687 10 S 2.638 3.362 11 O -1.002 7.002 12 O -1.004 7.004 13 N -0.840 5.840 14 C -0.321 4.321 15 H 0.084 0.916 16 C 0.027 3.973 17 N -0.836 5.836 18 Si 0.966 3.034 19 H -0.280 1.280 20 H -0.272 1.272 21 H -0.284 1.284 22 C 0.102 3.898 23 C 0.074 3.926 24 O -0.335 6.335 25 C 0.014 3.986 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.154 0.846 36 H 0.128 0.872 37 H 0.262 0.738 38 H 0.160 0.840 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.004 0.996 42 H 0.042 0.958 43 H 0.023 0.977 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 -3.432 9.775 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C -0.173 4.173 4 C -0.012 4.012 5 C -0.161 4.161 6 C -0.087 4.087 7 C -0.168 4.168 8 C -0.060 4.060 9 C -0.772 4.772 10 S 2.734 3.266 11 O -0.992 6.992 12 O -0.995 6.995 13 N -0.672 5.672 14 C -0.455 4.455 15 H 0.102 0.898 16 C -0.178 4.178 17 N -0.477 5.477 18 Si 0.792 3.208 19 H -0.205 1.205 20 H -0.197 1.197 21 H -0.210 1.210 22 C -0.024 4.024 23 C -0.005 4.005 24 O -0.252 6.252 25 C -0.084 4.084 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.133 0.867 33 H 0.177 0.823 34 H 0.186 0.814 35 H 0.172 0.828 36 H 0.146 0.854 37 H 0.075 0.925 38 H 0.176 0.824 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.022 0.978 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.383 -3.518 9.706 10.331 hybrid contribution 0.297 0.646 -0.491 0.864 sum 0.680 -2.872 9.215 9.676 Atomic orbital electron populations 1.21796 0.94046 1.02582 1.02450 1.21782 0.97705 0.94833 1.03374 1.21403 0.90665 0.99340 1.05848 1.19732 0.96195 0.93199 0.92112 1.21504 0.94392 1.01956 0.98281 1.21808 0.94873 0.93678 0.98377 1.21612 1.01244 1.01577 0.92372 1.21094 0.91485 0.92877 1.00581 1.31359 1.09859 1.17051 1.18954 1.04325 0.76520 0.72328 0.73413 1.93404 1.82527 1.35956 1.87268 1.93374 1.62860 1.55961 1.87296 1.53006 1.67463 1.11716 1.34987 1.19237 1.27088 0.82388 1.16764 0.89810 1.25479 0.95944 1.00907 0.95452 1.69563 1.30565 1.28614 1.19005 0.85310 0.78094 0.79699 0.77710 1.20465 1.19714 1.21036 1.22368 1.03925 0.85494 0.90576 1.22514 0.96518 0.89673 0.91797 1.88675 1.67187 1.38787 1.30526 1.22819 0.94055 1.01130 0.90396 0.91277 0.90132 0.94200 0.89321 0.92959 0.91056 0.86689 0.82255 0.81429 0.82791 0.85404 0.92541 0.82428 0.93047 0.92892 0.97752 0.93905 0.95857 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.91 71.98 0.71 -3.34 16 2 C -0.14 -4.37 5.88 30.59 0.18 -4.19 16 3 C -0.14 -4.54 4.78 29.85 0.14 -4.40 16 4 C -0.01 -0.39 5.13 -19.87 -0.10 -0.49 16 5 C -0.14 -3.86 9.68 22.27 0.22 -3.64 16 6 C -0.07 -1.68 10.05 22.27 0.22 -1.46 16 7 C -0.15 -4.28 10.05 22.27 0.22 -4.05 16 8 C -0.04 -1.55 9.57 22.27 0.21 -1.34 16 9 C -0.69 -28.51 5.83 22.27 0.13 -28.38 16 10 S 2.64 127.92 4.58 -56.49 -0.26 127.66 16 11 O -1.00 -49.77 14.80 -128.00 -1.89 -51.67 16 12 O -1.00 -53.79 14.64 -128.00 -1.87 -55.66 16 13 N -0.84 -41.90 1.93 -343.46 -0.66 -42.56 16 14 C -0.32 -16.92 9.26 84.03 0.78 -16.15 16 15 H 0.08 4.64 7.28 -2.91 -0.02 4.62 16 16 C 0.03 1.35 4.79 84.86 0.41 1.76 16 17 N -0.84 -40.61 6.72 21.65 0.15 -40.47 16 18 Si 0.97 41.12 29.56 68.60 2.03 43.15 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 C 0.10 4.72 5.11 86.38 0.44 5.16 16 23 C 0.07 3.35 6.19 71.98 0.45 3.80 16 24 O -0.34 -15.78 6.82 -148.98 -1.02 -16.79 16 25 C 0.01 0.51 11.01 113.37 1.25 1.76 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 2.00 5.83 -2.38 -0.01 1.98 16 31 H 0.07 2.88 5.33 -2.38 -0.01 2.87 16 32 H 0.11 2.94 8.04 -2.38 -0.02 2.92 16 33 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.13 4.97 7.13 -2.91 -0.02 4.95 16 37 H 0.26 12.19 8.31 -92.71 -0.77 11.42 16 38 H 0.16 7.53 4.98 -30.45 -0.15 7.38 16 39 H 0.05 2.20 7.50 -2.39 -0.02 2.19 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -66.02 359.44 2.57 -63.45 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.85 Total: 27.86 kcal Atomic # 6 Polarization: -60.22 SS G_CDS: 5.26 Total: -54.96 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -0.52 Total: -83.03 kcal Atomic # 8 Polarization: -119.34 SS G_CDS: -4.78 Total: -124.12 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 127.92 SS G_CDS: -0.26 Total: 127.66 kcal Total: -66.02 2.57 -63.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903149965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.677 kcal (2) G-P(sol) polarization free energy of solvation -66.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds