Wall clock time and date at job start Tue Mar 31 2020 15:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 C 1.53000 * 109.47394 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47207 * 305.00642 * 4 3 2 6 6 O 1.42903 * 109.46712 * 65.00054 * 4 3 2 7 7 C 1.52998 * 109.47278 * 185.00112 * 4 3 2 8 8 C 1.53001 * 109.47098 * 175.00092 * 7 4 3 9 9 N 1.46499 * 109.47285 * 180.02562 * 8 7 4 10 10 S 1.65591 * 120.00178 * 164.72387 * 9 8 7 11 11 O 1.42100 * 106.40310 * 178.81438 * 10 9 8 12 12 O 1.42100 * 106.40331 * 311.73702 * 10 9 8 13 13 C 1.76205 * 107.21765 * 65.27659 * 10 9 8 14 14 C 1.38666 * 119.87433 * 269.72787 * 13 10 9 15 15 C 1.38609 * 120.50068 * 179.72318 * 14 13 10 16 16 C 1.37640 * 120.24629 * 0.54996 * 15 14 13 17 17 C 1.40698 * 119.74791 * 359.72620 * 16 15 14 18 18 C 1.41393 * 120.24745 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00064 * 150.22418 * 18 17 16 20 20 C 1.39949 * 119.99844 * 330.21747 * 18 17 16 21 21 N 1.30823 * 119.99661 * 161.73045 * 20 18 17 22 22 Si 1.86795 * 120.00169 * 341.72898 * 20 18 17 23 23 H 1.48507 * 109.47226 * 95.40747 * 22 20 18 24 24 H 1.48494 * 109.47451 * 215.40973 * 22 20 18 25 25 H 1.48506 * 109.47000 * 335.41305 * 22 20 18 26 26 C 1.37596 * 119.87747 * 90.00053 * 13 10 9 27 27 H 1.09005 * 109.47240 * 299.99530 * 1 2 3 28 28 H 1.09003 * 109.47676 * 59.99813 * 1 2 3 29 29 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47240 * 240.00470 * 2 1 3 31 31 H 1.08995 * 109.47439 * 120.00015 * 2 1 3 32 32 H 1.09005 * 109.46682 * 60.00128 * 3 2 1 33 33 H 1.09003 * 109.47000 * 300.00601 * 3 2 1 34 34 H 0.96696 * 114.00311 * 60.00265 * 6 4 3 35 35 H 1.08994 * 109.46852 * 55.00287 * 7 4 3 36 36 H 1.09000 * 109.46934 * 294.99886 * 7 4 3 37 37 H 1.09004 * 109.46663 * 60.00016 * 8 7 4 38 38 H 1.08998 * 109.46832 * 300.00457 * 8 7 4 39 39 H 0.97000 * 119.99642 * 344.99912 * 9 8 7 40 40 H 1.08002 * 119.74467 * 0.02562 * 14 13 10 41 41 H 1.07994 * 119.88020 * 180.25870 * 15 14 13 42 42 H 1.08002 * 120.12644 * 179.75160 * 16 15 14 43 43 H 0.97002 * 119.99674 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.12450 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8529 0.8409 6 8 4.0457 0.8734 -1.2220 7 6 4.0800 2.8796 0.1251 8 6 5.6049 2.8704 0.2498 9 7 6.0932 4.2463 0.3709 10 16 7.6377 4.5337 0.8944 11 8 7.8118 5.9439 0.8758 12 8 7.8194 3.7434 2.0613 13 6 8.7311 3.8813 -0.3236 14 6 9.1679 2.5688 -0.2277 15 6 10.0236 2.0406 -1.1817 16 6 10.4583 2.8191 -2.2302 17 6 10.0262 4.1540 -2.3346 18 6 10.4657 4.9631 -3.4076 19 1 9.8335 5.7551 -3.7810 20 6 11.7201 4.7376 -3.9858 21 7 11.9887 5.2169 -5.1731 22 14 13.0108 3.7524 -3.0623 23 1 12.9578 2.3343 -3.4999 24 1 14.3573 4.3090 -3.3491 25 1 12.7432 3.8307 -1.6037 26 6 9.1529 4.6779 -1.3633 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6765 1.9564 -0.8900 34 1 3.7600 1.3479 -2.0147 35 1 3.6457 3.3429 1.0109 36 1 3.7912 3.4463 -0.7601 37 1 6.0390 2.4070 -0.6361 38 1 5.8936 2.3036 1.1349 39 1 5.5105 4.9891 0.1481 40 1 8.8349 1.9519 0.5939 41 1 10.3542 1.0158 -1.0994 42 1 11.1282 2.4068 -2.9702 43 1 12.8580 5.0603 -5.5740 44 1 8.8146 5.7012 -1.4338 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921682842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:38 Heat of formation + Delta-G solvation = -135.402264 kcal Electronic energy + Delta-G solvation = -25530.639876 eV Core-core repulsion = 21766.544868 eV Total energy + Delta-G solvation = -3764.095008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.63847 -37.92290 -36.77686 -35.46258 -35.36987 -34.38053 -33.78411 -31.12740 -30.72912 -30.16635 -27.89143 -25.39463 -23.86326 -22.40919 -21.72141 -21.42261 -20.90091 -19.22487 -18.07022 -17.16344 -16.56923 -16.35585 -16.23182 -16.06037 -15.40808 -15.01043 -14.90667 -14.66045 -14.09876 -13.91068 -13.76795 -13.71840 -13.16417 -12.88249 -12.49484 -12.28659 -12.22979 -12.12744 -11.87496 -11.73074 -11.68656 -11.62699 -11.54830 -11.47121 -11.33509 -11.04078 -10.98671 -10.93785 -10.79780 -10.35502 -10.06571 -10.01553 -9.78589 -9.40897 -9.15503 -8.28061 -7.88264 -7.09161 -4.64539 0.90235 1.90605 2.41380 2.99350 3.11420 3.20697 3.42349 3.85380 4.08344 4.11762 4.31671 4.37847 4.61326 4.68634 4.84152 4.85316 4.92068 5.10698 5.14689 5.16152 5.29498 5.45467 5.46798 5.54271 5.61440 5.69572 5.77990 5.82281 5.87349 6.00936 6.02384 6.04029 6.11444 6.19823 6.45526 6.57533 6.86056 7.03847 7.14275 7.19178 7.39010 7.47135 7.61279 7.77100 8.17463 8.41978 8.61155 9.92732 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.003013 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.759717 B = 9289.650959 C =10139.393639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.151 4.151 4 C 0.106 3.894 5 H 0.102 0.898 6 O -0.557 6.557 7 C -0.159 4.159 8 C 0.121 3.879 9 N -1.122 6.122 10 S 2.691 3.309 11 O -0.970 6.970 12 O -0.972 6.972 13 C -0.625 4.625 14 C -0.156 4.156 15 C -0.092 4.092 16 C -0.197 4.197 17 C 0.073 3.927 18 C -0.444 4.444 19 H 0.095 0.905 20 C 0.084 3.916 21 N -0.801 5.801 22 Si 0.906 3.094 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.103 4.103 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.375 0.625 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.413 0.587 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.288 0.712 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.114 -7.200 7.036 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.189 4.189 4 C 0.046 3.954 5 H 0.120 0.880 6 O -0.362 6.362 7 C -0.198 4.198 8 C -0.005 4.005 9 N -0.881 5.881 10 S 2.786 3.214 11 O -0.960 6.960 12 O -0.962 6.962 13 C -0.716 4.716 14 C -0.177 4.177 15 C -0.111 4.111 16 C -0.216 4.216 17 C 0.069 3.931 18 C -0.472 4.472 19 H 0.113 0.887 20 C -0.136 4.136 21 N -0.424 5.424 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.124 4.124 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.222 0.778 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.247 0.753 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.355 -7.261 8.048 19.621 hybrid contribution 0.366 0.042 -1.008 1.073 sum -15.990 -7.219 7.040 18.904 Atomic orbital electron populations 1.21791 0.96087 1.01575 1.01619 1.21472 0.95406 0.96422 1.02712 1.22337 0.95966 0.97780 1.02825 1.21940 0.92309 0.92918 0.88208 0.88021 1.86623 1.77004 1.57063 1.15545 1.22514 0.95648 0.98087 1.03526 1.21219 0.94526 0.81885 1.02913 1.55563 1.31981 1.13673 1.86836 1.01646 0.72465 0.73112 0.74208 1.93554 1.85213 1.29883 1.87377 1.93517 1.85345 1.71612 1.45772 1.29938 1.19297 1.05077 1.17321 1.20074 1.03566 0.93520 1.00549 1.20707 0.97471 0.98227 0.94706 1.21309 1.05414 0.94596 1.00318 1.17796 0.91962 0.91706 0.91675 1.19505 1.01794 1.15022 1.10852 0.88702 1.26158 0.99923 0.93832 0.93702 1.69678 1.23709 1.36359 1.12641 0.86377 0.78387 0.79246 0.82794 1.19403 1.21320 1.16641 1.20839 1.01186 0.97571 0.92762 0.92909 0.92869 0.92806 0.91247 0.92018 0.91039 0.91576 0.77811 0.90282 0.90774 0.90541 0.90463 0.75343 0.87044 0.87864 0.87607 0.90190 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.15 0.37 -0.56 16 2 C -0.12 -0.84 5.83 -26.73 -0.16 -0.99 16 3 C -0.15 -0.97 4.89 -26.73 -0.13 -1.10 16 4 C 0.11 0.84 2.97 -26.73 -0.08 0.76 16 5 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 6 O -0.56 -5.23 12.41 -35.23 -0.44 -5.67 16 7 C -0.16 -1.30 5.04 -26.73 -0.13 -1.44 16 8 C 0.12 1.41 6.12 -4.04 -0.02 1.38 16 9 N -1.12 -14.63 6.00 -10.61 -0.06 -14.70 16 10 S 2.69 47.64 5.74 -107.50 -0.62 47.02 16 11 O -0.97 -19.54 17.27 -57.17 -0.99 -20.52 16 12 O -0.97 -18.88 16.72 -57.17 -0.96 -19.83 16 13 C -0.63 -12.92 5.94 -39.66 -0.24 -13.15 16 14 C -0.16 -3.18 9.53 -39.29 -0.37 -3.55 16 15 C -0.09 -1.93 10.02 -39.66 -0.40 -2.33 16 16 C -0.20 -4.59 7.18 -38.87 -0.28 -4.87 16 17 C 0.07 1.80 5.10 -106.82 -0.55 1.26 16 18 C -0.44 -11.66 9.57 -37.74 -0.36 -12.02 16 19 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.08 2.14 5.40 -17.34 -0.09 2.04 16 21 N -0.80 -20.70 13.93 55.55 0.77 -19.93 16 22 Si 0.91 20.23 24.52 -169.99 -4.17 16.06 16 23 H -0.27 -5.73 6.71 56.52 0.38 -5.35 16 24 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.24 -5.63 6.86 56.52 0.39 -5.24 16 26 C -0.10 -2.35 9.26 -38.87 -0.36 -2.71 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.53 7.82 -51.93 -0.41 0.13 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.37 2.41 9.05 45.56 0.41 2.83 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.97 7.82 -51.93 -0.41 0.56 16 38 H 0.08 0.92 7.74 -51.93 -0.40 0.52 16 39 H 0.41 4.38 8.65 -34.46 -0.30 4.09 16 40 H 0.11 2.03 7.59 -52.49 -0.40 1.63 16 41 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.11 2.42 4.73 -52.49 -0.25 2.17 16 43 H 0.29 6.71 8.30 -40.82 -0.34 6.38 16 44 H 0.12 2.62 7.60 -52.49 -0.40 2.22 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -31.55 372.73 -9.61 -41.16 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.97 Total: 8.07 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: -2.80 Total: -37.28 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.71 Total: -34.63 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -2.38 Total: -46.02 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.17 Total: 16.06 kcal Atomic # 16 Polarization: 47.64 SS G_CDS: -0.62 Total: 47.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.55 -9.61 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921682842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.245 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds