Wall clock time and date at job start Tue Mar 31 2020 15:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 C 1.53000 * 109.47394 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47207 * 305.00642 * 4 3 2 6 6 O 1.42903 * 109.46712 * 65.00054 * 4 3 2 7 7 C 1.52998 * 109.47278 * 185.00112 * 4 3 2 8 8 C 1.53001 * 109.47098 * 175.00092 * 7 4 3 9 9 N 1.46499 * 109.47285 * 180.02562 * 8 7 4 10 10 S 1.65591 * 120.00178 * 164.72387 * 9 8 7 11 11 O 1.42100 * 106.40310 * 178.81438 * 10 9 8 12 12 O 1.42100 * 106.40331 * 311.73702 * 10 9 8 13 13 C 1.76205 * 107.21765 * 65.27659 * 10 9 8 14 14 C 1.38666 * 119.87433 * 269.72787 * 13 10 9 15 15 C 1.38609 * 120.50068 * 179.72318 * 14 13 10 16 16 C 1.37640 * 120.24629 * 0.54996 * 15 14 13 17 17 C 1.40698 * 119.74791 * 359.72620 * 16 15 14 18 18 C 1.41393 * 120.24745 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00064 * 150.22418 * 18 17 16 20 20 C 1.39949 * 119.99844 * 330.21747 * 18 17 16 21 21 N 1.30823 * 119.99661 * 161.73045 * 20 18 17 22 22 Si 1.86795 * 120.00169 * 341.72898 * 20 18 17 23 23 H 1.48507 * 109.47226 * 95.40747 * 22 20 18 24 24 H 1.48494 * 109.47451 * 215.40973 * 22 20 18 25 25 H 1.48506 * 109.47000 * 335.41305 * 22 20 18 26 26 C 1.37596 * 119.87747 * 90.00053 * 13 10 9 27 27 H 1.09005 * 109.47240 * 299.99530 * 1 2 3 28 28 H 1.09003 * 109.47676 * 59.99813 * 1 2 3 29 29 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47240 * 240.00470 * 2 1 3 31 31 H 1.08995 * 109.47439 * 120.00015 * 2 1 3 32 32 H 1.09005 * 109.46682 * 60.00128 * 3 2 1 33 33 H 1.09003 * 109.47000 * 300.00601 * 3 2 1 34 34 H 0.96696 * 114.00311 * 60.00265 * 6 4 3 35 35 H 1.08994 * 109.46852 * 55.00287 * 7 4 3 36 36 H 1.09000 * 109.46934 * 294.99886 * 7 4 3 37 37 H 1.09004 * 109.46663 * 60.00016 * 8 7 4 38 38 H 1.08998 * 109.46832 * 300.00457 * 8 7 4 39 39 H 0.97000 * 119.99642 * 344.99912 * 9 8 7 40 40 H 1.08002 * 119.74467 * 0.02562 * 14 13 10 41 41 H 1.07994 * 119.88020 * 180.25870 * 15 14 13 42 42 H 1.08002 * 120.12644 * 179.75160 * 16 15 14 43 43 H 0.97002 * 119.99674 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.12450 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8529 0.8409 6 8 4.0457 0.8734 -1.2220 7 6 4.0800 2.8796 0.1251 8 6 5.6049 2.8704 0.2498 9 7 6.0932 4.2463 0.3709 10 16 7.6377 4.5337 0.8944 11 8 7.8118 5.9439 0.8758 12 8 7.8194 3.7434 2.0613 13 6 8.7311 3.8813 -0.3236 14 6 9.1679 2.5688 -0.2277 15 6 10.0236 2.0406 -1.1817 16 6 10.4583 2.8191 -2.2302 17 6 10.0262 4.1540 -2.3346 18 6 10.4657 4.9631 -3.4076 19 1 9.8335 5.7551 -3.7810 20 6 11.7201 4.7376 -3.9858 21 7 11.9887 5.2169 -5.1731 22 14 13.0108 3.7524 -3.0623 23 1 12.9578 2.3343 -3.4999 24 1 14.3573 4.3090 -3.3491 25 1 12.7432 3.8307 -1.6037 26 6 9.1529 4.6779 -1.3633 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6765 1.9564 -0.8900 34 1 3.7600 1.3479 -2.0147 35 1 3.6457 3.3429 1.0109 36 1 3.7912 3.4463 -0.7601 37 1 6.0390 2.4070 -0.6361 38 1 5.8936 2.3036 1.1349 39 1 5.5105 4.9891 0.1481 40 1 8.8349 1.9519 0.5939 41 1 10.3542 1.0158 -1.0994 42 1 11.1282 2.4068 -2.9702 43 1 12.8580 5.0603 -5.5740 44 1 8.8146 5.7012 -1.4338 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921682842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:37 Heat of formation + Delta-G solvation = -159.358612 kcal Electronic energy + Delta-G solvation = -25531.678701 eV Core-core repulsion = 21766.544868 eV Total energy + Delta-G solvation = -3765.133833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.69418 -39.29557 -38.29542 -36.94413 -36.40583 -35.64472 -34.94146 -32.54868 -31.92421 -31.86332 -28.55690 -27.25178 -24.62528 -24.10808 -22.71236 -22.39978 -21.96519 -20.68750 -19.70197 -18.51452 -18.07312 -17.36399 -17.24415 -17.04051 -16.83985 -16.63488 -16.07705 -15.69092 -15.54092 -14.91863 -14.77776 -14.69360 -14.63456 -14.26383 -14.05170 -13.59637 -13.48239 -13.38067 -13.21514 -13.09335 -12.90207 -12.85031 -12.75328 -12.56175 -12.50067 -12.32323 -12.02342 -11.97286 -11.79526 -11.56626 -11.54548 -11.46325 -11.08570 -10.74077 -10.37678 -10.00740 -9.69736 -8.97958 -6.60276 -0.54269 0.17453 0.63937 1.20056 1.34874 1.42045 2.02492 2.08800 2.40757 2.74460 3.28862 3.38355 3.56658 3.80484 3.93341 4.12492 4.17384 4.21190 4.28672 4.32484 4.42944 4.45698 4.55318 4.63614 4.74935 4.75547 4.81507 4.85938 4.91960 5.02529 5.05990 5.07644 5.22169 5.27255 5.30986 5.33629 5.42593 5.47505 5.52308 5.62195 5.75186 5.97858 6.12492 6.23229 6.56976 6.68855 6.94910 8.10156 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.003013 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.759717 B = 9289.650959 C =10139.393639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.145 4.145 4 C 0.107 3.893 5 H 0.097 0.903 6 O -0.577 6.577 7 C -0.151 4.151 8 C 0.112 3.888 9 N -1.104 6.104 10 S 2.719 3.281 11 O -0.995 6.995 12 O -0.983 6.983 13 C -0.634 4.634 14 C -0.142 4.142 15 C -0.096 4.096 16 C -0.205 4.205 17 C 0.053 3.947 18 C -0.483 4.483 19 H 0.063 0.937 20 C 0.049 3.951 21 N -0.840 5.840 22 Si 0.955 3.045 23 H -0.248 1.248 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.122 4.122 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.386 0.614 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.427 0.573 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.296 0.704 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.371 -9.046 8.898 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.182 4.182 4 C 0.048 3.952 5 H 0.114 0.886 6 O -0.385 6.385 7 C -0.190 4.190 8 C -0.014 4.014 9 N -0.867 5.867 10 S 2.810 3.190 11 O -0.985 6.985 12 O -0.973 6.973 13 C -0.722 4.722 14 C -0.162 4.162 15 C -0.115 4.115 16 C -0.224 4.224 17 C 0.050 3.950 18 C -0.512 4.512 19 H 0.081 0.919 20 C -0.167 4.167 21 N -0.466 5.466 22 Si 0.778 3.222 23 H -0.173 1.173 24 H -0.200 1.200 25 H -0.181 1.181 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.235 0.765 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.264 0.736 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.602 -9.109 9.874 22.143 hybrid contribution 0.541 0.528 -1.428 1.616 sum -17.060 -8.581 8.446 20.881 Atomic orbital electron populations 1.21780 0.95441 1.01767 1.01973 1.21462 0.95972 0.96660 1.01993 1.22272 0.94687 0.97583 1.03691 1.21953 0.93250 0.92409 0.87616 0.88553 1.86590 1.77492 1.57879 1.16520 1.22489 0.92913 0.98677 1.04922 1.21445 0.96964 0.80496 1.02496 1.55183 1.30003 1.15164 1.86353 1.00833 0.72851 0.71974 0.73293 1.93520 1.86026 1.31459 1.87513 1.93504 1.86035 1.71806 1.45908 1.30468 1.19559 1.05166 1.16965 1.20603 1.01633 0.93465 1.00540 1.21162 0.96813 0.99846 0.93657 1.21496 1.05498 0.94189 1.01236 1.17962 0.92820 0.92473 0.91765 1.19475 1.02805 1.15845 1.13051 0.91918 1.26785 1.00978 0.94722 0.94170 1.69699 1.24761 1.38376 1.13728 0.85636 0.76730 0.79212 0.80615 1.17307 1.19962 1.18087 1.20889 1.01776 0.98036 0.93570 0.92401 0.92636 0.92772 0.92376 0.92369 0.90037 0.90795 0.76539 0.88733 0.89514 0.91516 0.90430 0.73607 0.84097 0.83992 0.87353 0.89310 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.48 5.83 30.59 0.18 -1.30 16 3 C -0.14 -1.49 4.89 30.59 0.15 -1.34 16 4 C 0.11 1.45 2.97 30.59 0.09 1.54 16 5 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 6 O -0.58 -9.80 12.41 -148.98 -1.85 -11.65 16 7 C -0.15 -2.02 5.04 30.59 0.15 -1.86 16 8 C 0.11 2.30 6.12 86.38 0.53 2.83 16 9 N -1.10 -26.16 6.00 -187.49 -1.12 -27.29 16 10 S 2.72 91.31 5.74 -56.49 -0.32 90.99 16 11 O -0.99 -39.15 17.27 -128.00 -2.21 -41.36 16 12 O -0.98 -35.52 16.72 -128.00 -2.14 -37.66 16 13 C -0.63 -25.31 5.94 22.22 0.13 -25.17 16 14 C -0.14 -5.37 9.53 22.46 0.21 -5.15 16 15 C -0.10 -3.75 10.02 22.22 0.22 -3.52 16 16 C -0.20 -9.34 7.18 22.73 0.16 -9.18 16 17 C 0.05 2.69 5.10 -21.29 -0.11 2.58 16 18 C -0.48 -26.69 9.57 23.46 0.22 -26.47 16 19 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 20 C 0.05 2.59 5.40 85.26 0.46 3.05 16 21 N -0.84 -45.08 13.93 21.83 0.30 -44.77 16 22 Si 0.96 41.60 24.52 68.60 1.68 43.28 16 23 H -0.25 -9.92 6.71 99.48 0.67 -9.25 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.26 -11.63 6.86 99.48 0.68 -10.94 16 26 C -0.12 -5.67 9.26 22.73 0.21 -5.45 16 27 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.82 7.82 -2.38 -0.02 0.81 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.39 4.30 9.05 -74.06 -0.67 3.63 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.53 7.82 -2.38 -0.02 1.52 16 38 H 0.08 1.63 7.74 -2.39 -0.02 1.61 16 39 H 0.43 7.98 8.65 -96.75 -0.84 7.14 16 40 H 0.14 4.52 7.59 -2.91 -0.02 4.50 16 41 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.11 4.83 4.73 -2.91 -0.01 4.82 16 43 H 0.30 14.21 8.30 -92.71 -0.77 13.44 16 44 H 0.12 5.28 7.60 -2.91 -0.02 5.25 16 Total: -1.00 -68.86 372.73 -2.88 -71.74 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.55 Total: 27.02 kcal Atomic # 6 Polarization: -73.64 SS G_CDS: 3.33 Total: -70.31 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -0.82 Total: -72.06 kcal Atomic # 8 Polarization: -84.47 SS G_CDS: -6.20 Total: -90.67 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.68 Total: 43.28 kcal Atomic # 16 Polarization: 91.31 SS G_CDS: -0.32 Total: 90.99 kcal Total: -68.86 -2.88 -71.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921682842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.618 kcal (2) G-P(sol) polarization free energy of solvation -68.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds