Wall clock time and date at job start Tue Mar 31 2020 15:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47055 * 2 1 4 4 C 1.52998 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47545 * 55.00030 * 4 3 2 6 6 O 1.42898 * 109.46891 * 294.99796 * 4 3 2 7 7 C 1.53007 * 109.46689 * 174.99921 * 4 3 2 8 8 C 1.53003 * 109.46682 * 184.99971 * 7 4 3 9 9 N 1.46505 * 109.46938 * 180.02562 * 8 7 4 10 10 S 1.65600 * 119.99929 * 164.99911 * 9 8 7 11 11 O 1.42094 * 106.39989 * 178.53757 * 10 9 8 12 12 O 1.42102 * 106.40079 * 311.45856 * 10 9 8 13 13 C 1.76197 * 107.21796 * 64.99907 * 10 9 8 14 14 C 1.38659 * 119.87569 * 269.72889 * 13 10 9 15 15 C 1.38617 * 120.50106 * 179.72462 * 14 13 10 16 16 C 1.37642 * 120.24672 * 0.54859 * 15 14 13 17 17 C 1.40695 * 119.74583 * 359.72505 * 16 15 14 18 18 C 1.41389 * 120.24492 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00095 * 150.22165 * 18 17 16 20 20 C 1.39947 * 120.00101 * 330.21677 * 18 17 16 21 21 N 1.30824 * 119.99991 * 161.72434 * 20 18 17 22 22 Si 1.86799 * 119.99863 * 341.72843 * 20 18 17 23 23 H 1.48506 * 109.47131 * 95.40848 * 22 20 18 24 24 H 1.48494 * 109.47162 * 215.40847 * 22 20 18 25 25 H 1.48503 * 109.47424 * 335.41363 * 22 20 18 26 26 C 1.37600 * 119.87812 * 89.99882 * 13 10 9 27 27 H 1.09007 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47578 * 299.99632 * 1 2 3 29 29 H 1.09000 * 109.47256 * 60.00567 * 1 2 3 30 30 H 1.09002 * 109.47202 * 239.99809 * 2 1 3 31 31 H 1.09000 * 109.47256 * 119.99433 * 2 1 3 32 32 H 1.09002 * 109.47271 * 59.99852 * 3 2 1 33 33 H 1.09000 * 109.46626 * 299.99819 * 3 2 1 34 34 H 0.96705 * 114.00331 * 299.99817 * 6 4 3 35 35 H 1.08999 * 109.46961 * 65.00326 * 7 4 3 36 36 H 1.08995 * 109.47036 * 304.99609 * 7 4 3 37 37 H 1.09005 * 109.47254 * 299.99606 * 8 7 4 38 38 H 1.08997 * 109.47506 * 60.00078 * 8 7 4 39 39 H 0.96997 * 119.99596 * 344.99510 * 9 8 7 40 40 H 1.07997 * 119.74748 * 359.97438 * 14 13 10 41 41 H 1.08002 * 119.87583 * 180.24921 * 15 14 13 42 42 H 1.08001 * 120.12525 * 179.74861 * 16 15 14 43 43 H 0.97002 * 119.99405 * 180.02562 * 21 20 18 44 44 H 1.08004 * 120.12321 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8409 6 8 4.0457 0.8734 1.2220 7 6 4.0799 2.8796 -0.1251 8 6 5.6048 2.8705 -0.2499 9 7 6.0932 4.2465 -0.3697 10 16 7.7007 4.5768 -0.1478 11 8 7.8567 5.9728 -0.3620 12 8 8.0809 3.9283 1.0581 13 6 8.5822 3.7729 -1.4444 14 6 9.0404 2.4762 -1.2675 15 6 9.7303 1.8294 -2.2809 16 6 9.9777 2.4735 -3.4719 17 6 9.5225 3.7913 -3.6605 18 6 9.7703 4.4627 -4.8799 19 1 9.0778 5.2119 -5.2343 20 6 10.9130 4.1567 -5.6275 21 7 10.9762 4.4889 -6.8913 22 14 12.3480 3.2736 -4.8210 23 1 12.2357 1.8143 -5.0724 24 1 13.6231 3.7775 -5.3914 25 1 12.3259 3.5268 -3.3579 26 6 8.8181 4.4361 -2.6267 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7601 1.3480 2.0147 35 1 3.7912 3.4464 0.7601 36 1 3.6457 3.3430 -1.0110 37 1 6.0391 2.4071 0.6361 38 1 5.8936 2.3037 -1.1350 39 1 5.4750 4.9640 -0.5790 40 1 8.8549 1.9649 -0.3344 41 1 10.0792 0.8179 -2.1337 42 1 10.5190 1.9691 -4.2587 43 1 11.7682 4.2764 -7.4096 44 1 8.4637 5.4474 -2.7609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921682843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:42 Heat of formation + Delta-G solvation = -135.567675 kcal Electronic energy + Delta-G solvation = -25499.384925 eV Core-core repulsion = 21735.282745 eV Total energy + Delta-G solvation = -3764.102181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.65220 -37.93278 -36.77015 -35.46058 -35.36820 -34.39015 -33.79348 -31.13272 -30.73855 -30.17533 -27.89010 -25.40349 -23.86312 -22.41783 -21.72209 -21.42132 -20.90955 -19.22901 -18.07581 -17.15953 -16.67733 -16.34472 -16.25956 -15.94239 -15.39959 -15.02510 -14.91030 -14.65859 -14.08101 -14.00715 -13.75234 -13.70729 -13.17151 -12.89051 -12.48561 -12.29640 -12.23288 -12.12174 -11.88438 -11.72646 -11.68142 -11.63545 -11.56769 -11.47539 -11.31800 -11.04911 -10.98274 -10.94170 -10.80516 -10.36582 -10.05141 -10.01408 -9.79522 -9.42806 -9.16988 -8.29179 -7.89339 -7.10074 -4.65541 0.90425 1.89680 2.40271 2.98558 3.10793 3.20082 3.42395 3.84596 4.07660 4.11084 4.30685 4.37415 4.61325 4.69032 4.82976 4.89587 4.91516 5.07452 5.14051 5.17375 5.29447 5.45065 5.48322 5.58049 5.63784 5.67248 5.77605 5.81568 5.85720 6.00566 6.02573 6.04049 6.11445 6.18845 6.44584 6.56759 6.85091 7.03268 7.14173 7.18322 7.38058 7.43812 7.60266 7.76136 8.16551 8.41000 8.60179 9.91796 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.002992 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.178262 B = 9355.135645 C =10154.839551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.151 4.151 4 C 0.106 3.894 5 H 0.103 0.897 6 O -0.558 6.558 7 C -0.158 4.158 8 C 0.121 3.879 9 N -1.122 6.122 10 S 2.691 3.309 11 O -0.970 6.970 12 O -0.971 6.971 13 C -0.626 4.626 14 C -0.157 4.157 15 C -0.092 4.092 16 C -0.197 4.197 17 C 0.073 3.927 18 C -0.444 4.444 19 H 0.095 0.905 20 C 0.084 3.916 21 N -0.800 5.800 22 Si 0.906 3.094 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.103 4.103 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.373 0.627 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.413 0.587 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.288 0.712 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.628 -6.116 10.674 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.189 4.189 4 C 0.046 3.954 5 H 0.121 0.879 6 O -0.363 6.363 7 C -0.198 4.198 8 C -0.005 4.005 9 N -0.880 5.880 10 S 2.786 3.214 11 O -0.960 6.960 12 O -0.961 6.961 13 C -0.717 4.717 14 C -0.178 4.178 15 C -0.112 4.112 16 C -0.217 4.217 17 C 0.069 3.931 18 C -0.472 4.472 19 H 0.113 0.887 20 C -0.136 4.136 21 N -0.424 5.424 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.124 4.124 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.220 0.780 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.246 0.754 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.780 -6.114 10.719 19.254 hybrid contribution 0.248 -0.044 -0.468 0.531 sum -14.531 -6.158 10.252 18.820 Atomic orbital electron populations 1.21790 0.96080 1.01582 1.01619 1.21474 0.95416 0.96413 1.02718 1.22332 0.95920 0.97798 1.02835 1.21957 0.92353 0.92985 0.88115 0.87872 1.86621 1.77027 1.57091 1.15567 1.22514 0.95649 0.98042 1.03550 1.21221 0.94627 0.81892 1.02804 1.55576 1.27418 1.15353 1.89694 1.01656 0.72203 0.73213 0.74368 1.93553 1.85075 1.30592 1.86825 1.93523 1.81740 1.77103 1.43734 1.29955 1.18566 1.07433 1.15720 1.20091 1.05013 0.93640 0.99062 1.20716 0.98360 0.98330 0.93756 1.21312 1.06907 0.95481 0.98002 1.17794 0.91587 0.91322 0.92442 1.19507 1.07104 1.19547 1.01011 0.88696 1.26160 1.00323 0.93231 0.93902 1.69679 1.29376 1.36351 1.06962 0.86375 0.78988 0.79264 0.82173 1.19407 1.21307 1.16628 1.20848 1.02349 0.98039 0.91130 0.92803 0.92916 0.92857 0.91942 0.91313 0.91645 0.90943 0.77962 0.90847 0.90182 0.89675 0.91345 0.75359 0.86967 0.87856 0.87603 0.90179 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.85 5.83 -26.73 -0.16 -1.00 16 3 C -0.15 -0.98 4.89 -26.73 -0.13 -1.11 16 4 C 0.11 0.84 2.97 -26.73 -0.08 0.76 16 5 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 6 O -0.56 -5.02 12.41 -35.23 -0.44 -5.46 16 7 C -0.16 -1.30 5.04 -26.73 -0.13 -1.44 16 8 C 0.12 1.41 6.12 -4.04 -0.02 1.38 16 9 N -1.12 -14.63 6.00 -10.61 -0.06 -14.69 16 10 S 2.69 47.64 5.74 -107.50 -0.62 47.02 16 11 O -0.97 -19.54 17.26 -57.17 -0.99 -20.52 16 12 O -0.97 -18.91 16.73 -57.17 -0.96 -19.87 16 13 C -0.63 -12.90 5.94 -39.66 -0.24 -13.14 16 14 C -0.16 -3.19 9.53 -39.29 -0.37 -3.56 16 15 C -0.09 -1.93 10.02 -39.66 -0.40 -2.33 16 16 C -0.20 -4.59 7.18 -38.87 -0.28 -4.87 16 17 C 0.07 1.79 5.10 -106.83 -0.55 1.25 16 18 C -0.44 -11.64 9.57 -37.74 -0.36 -12.00 16 19 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.08 2.13 5.40 -17.34 -0.09 2.04 16 21 N -0.80 -20.67 13.93 55.55 0.77 -19.90 16 22 Si 0.91 20.19 24.52 -169.99 -4.17 16.02 16 23 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 24 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.24 -5.62 6.86 56.52 0.39 -5.23 16 26 C -0.10 -2.35 9.26 -38.87 -0.36 -2.71 16 27 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.52 7.82 -51.93 -0.41 0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.37 2.14 9.05 45.56 0.41 2.56 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.06 7.43 -51.93 -0.39 0.68 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.41 4.38 8.65 -34.47 -0.30 4.08 16 40 H 0.11 2.05 7.59 -52.49 -0.40 1.65 16 41 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.11 2.41 4.73 -52.49 -0.25 2.17 16 43 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 44 H 0.12 2.62 7.60 -52.48 -0.40 2.22 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -31.55 372.74 -9.61 -41.16 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.97 Total: 7.91 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: -2.80 Total: -37.29 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.71 Total: -34.59 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -2.38 Total: -45.85 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.17 Total: 16.02 kcal Atomic # 16 Polarization: 47.64 SS G_CDS: -0.62 Total: 47.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.55 -9.61 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921682843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.411 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds