Wall clock time and date at job start Tue Mar 31 2020 14:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47009 * 2 1 4 4 C 1.37722 * 119.95727 * 100.23996 * 3 2 1 5 5 C 1.39725 * 119.91553 * 180.29321 * 4 3 2 6 6 C 1.47566 * 120.09512 * 179.69794 * 5 4 3 7 7 O 1.21598 * 119.99762 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00416 * 180.02562 * 6 5 4 9 9 C 1.39919 * 120.00395 * 175.48116 * 8 6 5 10 10 C 1.38939 * 120.00493 * 214.86550 * 9 8 6 11 11 C 1.38001 * 119.99757 * 179.74012 * 10 9 8 12 12 C 1.38915 * 119.99857 * 0.51010 * 11 10 9 13 13 O 1.35778 * 119.99489 * 179.73936 * 12 11 10 14 14 C 1.34808 * 116.99921 * 185.37215 * 13 12 11 15 15 H 1.07996 * 120.00287 * 354.96730 * 14 13 12 16 16 C 1.38637 * 119.99725 * 174.96647 * 14 13 12 17 17 N 1.31564 * 120.00027 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99761 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46983 * 89.99733 * 18 16 14 20 20 H 1.48497 * 109.47135 * 209.99897 * 18 16 14 21 21 H 1.48505 * 109.47190 * 330.00224 * 18 16 14 22 22 C 1.38912 * 120.00610 * 359.76842 * 12 11 10 23 23 C 1.37995 * 120.00467 * 359.97340 * 22 12 11 24 24 C 1.39771 * 119.81625 * 359.72439 * 5 4 3 25 25 C 1.37679 * 119.91101 * 359.97438 * 24 5 4 26 26 C 1.38975 * 119.95959 * 279.99863 * 3 2 1 27 27 O 1.35715 * 119.90942 * 0.02562 * 26 3 2 28 28 H 1.09001 * 109.47539 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47128 * 300.00041 * 1 2 3 30 30 H 1.08998 * 109.47605 * 59.99736 * 1 2 3 31 31 H 1.09002 * 109.46723 * 240.00064 * 2 1 3 32 32 H 1.09002 * 109.46899 * 120.00324 * 2 1 3 33 33 H 1.08005 * 120.04590 * 0.02562 * 4 3 2 34 34 H 0.97003 * 119.99710 * 355.48472 * 8 6 5 35 35 H 1.07999 * 120.00113 * 0.02562 * 10 9 8 36 36 H 1.07994 * 120.00128 * 180.23064 * 11 10 9 37 37 H 0.97006 * 119.99789 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99412 * 179.97438 * 22 12 11 39 39 H 1.08006 * 120.00005 * 179.97438 * 23 22 12 40 40 H 1.08006 * 120.04380 * 180.02562 * 24 5 4 41 41 H 1.07996 * 119.95312 * 180.02562 * 25 24 5 42 42 H 0.96701 * 113.99600 * 269.72365 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4615 1.9984 1.1742 5 6 2.9213 3.3179 1.1743 6 6 3.3759 3.9430 2.4314 7 8 3.3511 3.3095 3.4690 8 7 3.8185 5.2159 2.4295 9 6 4.1602 5.8397 3.6344 10 6 3.9185 7.1970 3.8071 11 6 4.2506 7.8109 4.9976 12 6 4.8362 7.0741 6.0193 13 8 5.1677 7.6794 7.1886 14 6 5.8325 6.9360 8.0956 15 1 6.0063 5.8863 7.9105 16 6 6.2932 7.5190 9.2661 17 7 6.0811 8.7977 9.4918 18 14 7.2151 6.4890 10.5225 19 1 8.6692 6.5282 10.2237 20 1 6.9743 7.0347 11.8825 21 1 6.7347 5.0852 10.4602 22 6 5.0831 5.7184 5.8446 23 6 4.7462 5.1031 4.6563 24 6 2.9490 4.0443 -0.0195 25 6 2.5240 3.4575 -1.1902 26 6 2.0665 2.1448 -1.1858 27 8 1.6468 1.5706 -2.3416 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.4387 1.4338 2.0946 34 1 3.9003 5.6997 1.5927 35 1 3.4666 7.7705 3.0114 36 1 4.0594 8.8651 5.1332 37 1 6.4031 9.2055 10.3110 38 1 5.5388 5.1458 6.6390 39 1 4.9387 4.0490 4.5204 40 1 3.3041 5.0643 -0.0237 41 1 2.5455 4.0180 -2.1131 42 1 2.3462 1.1175 -2.8322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117664957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:21 Heat of formation + Delta-G solvation = -54.465637 kcal Electronic energy + Delta-G solvation = -25854.462488 eV Core-core repulsion = 21958.433204 eV Total energy + Delta-G solvation = -3896.029284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78069 -39.75778 -38.64357 -36.98568 -36.34663 -34.64505 -33.87451 -32.19350 -30.71116 -30.20120 -29.75410 -27.75396 -25.34250 -24.38683 -23.87000 -22.37343 -21.99724 -21.25678 -19.96138 -18.74702 -18.31251 -17.78066 -17.10081 -16.62098 -15.93390 -15.83793 -15.21431 -15.03408 -14.51152 -14.30150 -14.16244 -14.05066 -13.96774 -13.60317 -13.57670 -13.45444 -12.88686 -12.70531 -12.58861 -12.45040 -12.08660 -11.88549 -11.72461 -11.57922 -11.52328 -11.30733 -11.01624 -10.77043 -10.73246 -10.43192 -9.82795 -9.69899 -9.26811 -9.19205 -8.95853 -8.69597 -8.21353 -6.94846 -6.44619 -4.01978 0.43431 0.94764 2.10740 2.22046 2.72509 3.14250 3.15514 3.20105 3.21776 3.53797 3.76242 3.98086 4.28644 4.43993 4.50791 4.61666 4.78943 4.85742 5.03164 5.08718 5.11148 5.14316 5.25456 5.41212 5.57528 5.59435 5.64620 5.67030 5.74315 5.83774 5.94673 5.96777 6.09016 6.12391 6.17158 6.33611 6.34472 6.71617 6.85195 6.99821 7.08386 7.19261 7.30060 7.43498 7.65548 7.76626 8.00578 8.30867 9.01188 9.70323 10.73224 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.002125 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.514673 B =13174.997722 C =13937.149500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.116 4.116 4 C -0.043 4.043 5 C -0.133 4.133 6 C 0.549 3.451 7 O -0.522 6.522 8 N -0.653 5.653 9 C 0.031 3.969 10 C -0.091 4.091 11 C -0.178 4.178 12 C 0.147 3.853 13 O -0.176 6.176 14 C -0.390 4.390 15 H 0.093 0.907 16 C 0.039 3.961 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.221 4.221 23 C -0.062 4.062 24 C -0.076 4.076 25 C -0.150 4.150 26 C 0.129 3.871 27 O -0.494 6.494 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.400 0.600 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.270 0.730 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 -13.399 -23.331 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.117 4.117 4 C -0.062 4.062 5 C -0.136 4.136 6 C 0.337 3.663 7 O -0.399 6.399 8 N -0.298 5.298 9 C -0.061 4.061 10 C -0.111 4.111 11 C -0.198 4.198 12 C 0.093 3.907 13 O -0.079 6.079 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.191 1.191 22 C -0.241 4.241 23 C -0.082 4.082 24 C -0.095 4.095 25 C -0.168 4.168 26 C 0.084 3.916 27 O -0.304 6.304 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.236 0.764 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.080 0.920 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -6.915 -13.230 -22.149 26.710 hybrid contribution 0.930 -0.354 -0.040 0.995 sum -5.985 -13.584 -22.189 26.696 Atomic orbital electron populations 1.21737 0.94332 1.01794 1.02524 1.20408 0.96630 0.91556 1.02835 1.20206 1.01234 0.97432 0.92807 1.21105 0.93813 0.93319 0.97938 1.20003 1.04663 0.95589 0.93365 1.18183 0.77793 0.81885 0.88432 1.90793 1.54116 1.62171 1.32855 1.43080 1.64519 1.13412 1.08766 1.17234 1.08545 0.92398 0.87949 1.20355 1.00822 0.92837 0.97131 1.19990 1.07635 0.99827 0.92340 1.19422 0.93093 0.91132 0.87046 1.83972 1.64355 1.38971 1.20596 1.21343 1.33967 0.93691 0.97656 0.88989 1.25290 0.97339 0.96295 0.97617 1.70044 1.43225 1.10471 1.25974 0.85708 0.79376 0.79274 0.79083 1.19867 1.20259 1.19131 1.21108 1.08992 0.94951 0.99016 1.20857 0.95366 0.99550 0.92450 1.21191 0.97402 0.99516 0.91386 1.21322 1.01055 0.95292 0.99143 1.18502 0.95899 0.91454 0.85774 1.84769 1.38444 1.73453 1.33759 0.92370 0.92559 0.92044 0.90947 0.90786 0.84087 0.76402 0.86710 0.85998 0.92021 0.85149 0.85668 0.85093 0.84730 0.75234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.72 16 2 C -0.08 -0.56 5.72 -27.89 -0.16 -0.72 16 3 C -0.12 -1.05 5.14 -104.54 -0.54 -1.58 16 4 C -0.04 -0.47 9.20 -39.21 -0.36 -0.83 16 5 C -0.13 -1.53 5.87 -104.96 -0.62 -2.15 16 6 C 0.55 8.19 7.61 -12.46 -0.09 8.10 16 7 O -0.52 -9.78 13.77 5.28 0.07 -9.71 16 8 N -0.65 -9.15 5.28 -10.76 -0.06 -9.20 16 9 C 0.03 0.55 6.30 -83.65 -0.53 0.03 16 10 C -0.09 -1.59 9.96 -39.41 -0.39 -1.99 16 11 C -0.18 -3.71 9.99 -39.42 -0.39 -4.10 16 12 C 0.15 3.59 6.65 -39.08 -0.26 3.33 16 13 O -0.18 -5.03 9.75 0.02 0.00 -5.03 16 14 C -0.39 -11.00 9.48 30.88 0.29 -10.70 16 15 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 18 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 C -0.22 -5.02 9.16 -39.42 -0.36 -5.38 16 23 C -0.06 -1.27 8.68 -39.41 -0.34 -1.61 16 24 C -0.08 -0.66 9.53 -39.21 -0.37 -1.04 16 25 C -0.15 -1.17 9.97 -39.50 -0.39 -1.56 16 26 C 0.13 1.06 6.68 -39.02 -0.26 0.80 16 27 O -0.49 -3.24 12.61 -18.85 -0.24 -3.48 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.06 0.49 8.04 -51.93 -0.42 0.08 16 31 H 0.07 0.42 7.85 -51.93 -0.41 0.01 16 32 H 0.07 0.51 7.99 -51.93 -0.42 0.09 16 33 H 0.14 1.60 7.61 -52.48 -0.40 1.20 16 34 H 0.40 4.03 6.85 -40.82 -0.28 3.75 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 38 H 0.13 2.98 5.63 -52.49 -0.30 2.68 16 39 H 0.13 2.52 6.22 -52.48 -0.33 2.20 16 40 H 0.13 0.82 6.41 -52.48 -0.34 0.49 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.39 0.78 9.06 45.56 0.41 1.20 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -34.54 360.92 -7.54 -42.08 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -3.99 Total: 7.90 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -4.51 Total: -19.14 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.70 Total: -33.76 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.16 Total: -18.22 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.54 -7.54 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117664957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.388 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds