Wall clock time and date at job start Tue Mar 31 2020 14:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47009 * 2 1 4 4 C 1.37722 * 119.95727 * 100.23996 * 3 2 1 5 5 C 1.39725 * 119.91553 * 180.29321 * 4 3 2 6 6 C 1.47566 * 120.09512 * 179.69794 * 5 4 3 7 7 O 1.21598 * 119.99762 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00416 * 180.02562 * 6 5 4 9 9 C 1.39919 * 120.00395 * 175.48116 * 8 6 5 10 10 C 1.38939 * 120.00493 * 214.86550 * 9 8 6 11 11 C 1.38001 * 119.99757 * 179.74012 * 10 9 8 12 12 C 1.38915 * 119.99857 * 0.51010 * 11 10 9 13 13 O 1.35778 * 119.99489 * 179.73936 * 12 11 10 14 14 C 1.34808 * 116.99921 * 185.37215 * 13 12 11 15 15 H 1.07996 * 120.00287 * 354.96730 * 14 13 12 16 16 C 1.38637 * 119.99725 * 174.96647 * 14 13 12 17 17 N 1.31564 * 120.00027 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99761 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46983 * 89.99733 * 18 16 14 20 20 H 1.48497 * 109.47135 * 209.99897 * 18 16 14 21 21 H 1.48505 * 109.47190 * 330.00224 * 18 16 14 22 22 C 1.38912 * 120.00610 * 359.76842 * 12 11 10 23 23 C 1.37995 * 120.00467 * 359.97340 * 22 12 11 24 24 C 1.39771 * 119.81625 * 359.72439 * 5 4 3 25 25 C 1.37679 * 119.91101 * 359.97438 * 24 5 4 26 26 C 1.38975 * 119.95959 * 279.99863 * 3 2 1 27 27 O 1.35715 * 119.90942 * 0.02562 * 26 3 2 28 28 H 1.09001 * 109.47539 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47128 * 300.00041 * 1 2 3 30 30 H 1.08998 * 109.47605 * 59.99736 * 1 2 3 31 31 H 1.09002 * 109.46723 * 240.00064 * 2 1 3 32 32 H 1.09002 * 109.46899 * 120.00324 * 2 1 3 33 33 H 1.08005 * 120.04590 * 0.02562 * 4 3 2 34 34 H 0.97003 * 119.99710 * 355.48472 * 8 6 5 35 35 H 1.07999 * 120.00113 * 0.02562 * 10 9 8 36 36 H 1.07994 * 120.00128 * 180.23064 * 11 10 9 37 37 H 0.97006 * 119.99789 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99412 * 179.97438 * 22 12 11 39 39 H 1.08006 * 120.00005 * 179.97438 * 23 22 12 40 40 H 1.08006 * 120.04380 * 180.02562 * 24 5 4 41 41 H 1.07996 * 119.95312 * 180.02562 * 25 24 5 42 42 H 0.96701 * 113.99600 * 269.72365 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4615 1.9984 1.1742 5 6 2.9213 3.3179 1.1743 6 6 3.3759 3.9430 2.4314 7 8 3.3511 3.3095 3.4690 8 7 3.8185 5.2159 2.4295 9 6 4.1602 5.8397 3.6344 10 6 3.9185 7.1970 3.8071 11 6 4.2506 7.8109 4.9976 12 6 4.8362 7.0741 6.0193 13 8 5.1677 7.6794 7.1886 14 6 5.8325 6.9360 8.0956 15 1 6.0063 5.8863 7.9105 16 6 6.2932 7.5190 9.2661 17 7 6.0811 8.7977 9.4918 18 14 7.2151 6.4890 10.5225 19 1 8.6692 6.5282 10.2237 20 1 6.9743 7.0347 11.8825 21 1 6.7347 5.0852 10.4602 22 6 5.0831 5.7184 5.8446 23 6 4.7462 5.1031 4.6563 24 6 2.9490 4.0443 -0.0195 25 6 2.5240 3.4575 -1.1902 26 6 2.0665 2.1448 -1.1858 27 8 1.6468 1.5706 -2.3416 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.4387 1.4338 2.0946 34 1 3.9003 5.6997 1.5927 35 1 3.4666 7.7705 3.0114 36 1 4.0594 8.8651 5.1332 37 1 6.4031 9.2055 10.3110 38 1 5.5388 5.1458 6.6390 39 1 4.9387 4.0490 4.5204 40 1 3.3041 5.0643 -0.0237 41 1 2.5455 4.0180 -2.1131 42 1 2.3462 1.1175 -2.8322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117664957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:20 Heat of formation + Delta-G solvation = -78.270769 kcal Electronic energy + Delta-G solvation = -25855.494756 eV Core-core repulsion = 21958.433204 eV Total energy + Delta-G solvation = -3897.061552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.82343 -40.87458 -40.17172 -38.25916 -37.40072 -35.66211 -34.95314 -34.16567 -31.90619 -31.45462 -30.60969 -29.17268 -27.29981 -25.11951 -24.83996 -23.90258 -22.95238 -22.55898 -21.09212 -20.00114 -19.38242 -19.25943 -18.45209 -18.09442 -16.79048 -16.60454 -16.41132 -16.26744 -16.18339 -15.69296 -15.50152 -15.33951 -14.97369 -14.79210 -14.63313 -14.59246 -14.26458 -14.04878 -13.59661 -13.41921 -13.31240 -13.20568 -13.10614 -12.74590 -12.67531 -12.47915 -12.46026 -12.13891 -11.89569 -11.44817 -11.31937 -11.22253 -10.89115 -10.55515 -9.95447 -9.85893 -9.65566 -8.63808 -8.47845 -6.14498 -0.35383 0.27693 0.51058 0.57865 1.34556 1.42634 1.51566 1.71049 2.03164 2.17513 2.66184 2.82709 3.13609 3.19619 3.49910 3.61871 3.66550 3.83549 4.08331 4.10472 4.11994 4.23790 4.43570 4.46268 4.47543 4.53804 4.63330 4.70992 4.78129 4.99325 5.00654 5.04778 5.07168 5.10607 5.17197 5.27007 5.32452 5.35730 5.41904 5.46822 5.56190 5.68326 5.71864 6.01187 6.13332 6.46724 6.82241 6.96727 7.13255 7.75635 8.74750 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.002125 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.514673 B =13174.997722 C =13937.149500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.124 4.124 4 C -0.056 4.056 5 C -0.156 4.156 6 C 0.550 3.450 7 O -0.568 6.568 8 N -0.642 5.642 9 C 0.058 3.942 10 C -0.074 4.074 11 C -0.179 4.179 12 C 0.108 3.892 13 O -0.226 6.226 14 C -0.414 4.414 15 H 0.097 0.903 16 C -0.020 4.020 17 N -0.917 5.917 18 Si 1.016 2.984 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.258 1.258 22 C -0.229 4.229 23 C -0.075 4.075 24 C -0.065 4.065 25 C -0.148 4.148 26 C 0.141 3.859 27 O -0.498 6.498 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.424 0.576 35 H 0.169 0.831 36 H 0.131 0.869 37 H 0.273 0.727 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 -14.392 -27.387 31.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.125 4.125 4 C -0.075 4.075 5 C -0.159 4.159 6 C 0.341 3.659 7 O -0.448 6.448 8 N -0.288 5.288 9 C -0.035 4.035 10 C -0.094 4.094 11 C -0.199 4.199 12 C 0.057 3.943 13 O -0.132 6.132 14 C -0.490 4.490 15 H 0.114 0.886 16 C -0.218 4.218 17 N -0.555 5.555 18 Si 0.836 3.164 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.182 1.182 22 C -0.249 4.249 23 C -0.095 4.095 24 C -0.084 4.084 25 C -0.166 4.166 26 C 0.096 3.904 27 O -0.312 6.312 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.265 0.735 35 H 0.187 0.813 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -7.526 -14.248 -26.317 30.858 hybrid contribution 0.930 -0.224 0.738 1.208 sum -6.595 -14.472 -25.579 30.120 Atomic orbital electron populations 1.21710 0.94465 1.02391 1.01553 1.20460 0.96426 0.90885 1.03712 1.20342 1.01302 0.98289 0.92548 1.21080 0.94787 0.93448 0.98200 1.19749 1.07299 0.96117 0.92728 1.18770 0.76521 0.81501 0.89127 1.90779 1.55905 1.63215 1.34899 1.42972 1.64110 1.13392 1.08359 1.17384 1.05081 0.92599 0.88458 1.20793 0.98979 0.92694 0.96946 1.20337 1.06639 1.00366 0.92561 1.19953 0.94889 0.92171 0.87269 1.83935 1.66779 1.40167 1.22326 1.21761 1.34620 0.94199 0.98436 0.88577 1.26529 0.98102 0.97677 0.99513 1.70173 1.45627 1.12539 1.27117 0.84622 0.78120 0.77616 0.76083 1.18632 1.19312 1.18185 1.21094 1.09455 0.94614 0.99768 1.20931 0.96221 0.99792 0.92600 1.21445 0.96219 1.00385 0.90303 1.21633 1.00030 0.95146 0.99835 1.18619 0.94113 0.91688 0.85971 1.84716 1.39689 1.73657 1.33106 0.91060 0.93939 0.92494 0.89063 0.90957 0.85837 0.73539 0.81350 0.85127 0.91755 0.86538 0.85733 0.82337 0.81901 0.72531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.08 -0.99 5.72 29.85 0.17 -0.82 16 3 C -0.12 -1.99 5.14 -19.81 -0.10 -2.09 16 4 C -0.06 -1.18 9.20 22.51 0.21 -0.97 16 5 C -0.16 -3.28 5.87 -20.09 -0.12 -3.40 16 6 C 0.55 15.64 7.61 86.71 0.66 16.30 16 7 O -0.57 -21.46 13.77 -4.03 -0.06 -21.52 16 8 N -0.64 -16.02 5.28 -306.20 -1.62 -17.64 16 9 C 0.06 1.97 6.30 38.18 0.24 2.21 16 10 C -0.07 -2.38 9.96 22.38 0.22 -2.15 16 11 C -0.18 -7.40 9.99 22.38 0.22 -7.17 16 12 C 0.11 5.48 6.65 22.59 0.15 5.63 16 13 O -0.23 -13.72 9.75 -22.83 -0.22 -13.94 16 14 C -0.41 -24.71 9.48 67.92 0.64 -24.06 16 15 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 16 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 17 N -0.92 -56.52 13.67 21.61 0.30 -56.23 16 18 Si 1.02 43.96 29.55 68.60 2.03 45.99 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 C -0.23 -10.89 9.16 22.37 0.20 -10.69 16 23 C -0.08 -3.10 8.68 22.38 0.19 -2.90 16 24 C -0.06 -0.87 9.53 22.51 0.21 -0.65 16 25 C -0.15 -1.65 9.97 22.32 0.22 -1.42 16 26 C 0.14 1.82 6.68 22.63 0.15 1.97 16 27 O -0.50 -4.51 12.61 -90.36 -1.14 -5.64 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 0.80 8.04 -2.39 -0.02 0.78 16 31 H 0.09 0.80 7.85 -2.39 -0.02 0.79 16 32 H 0.07 0.94 7.99 -2.39 -0.02 0.92 16 33 H 0.12 2.94 7.61 -2.91 -0.02 2.92 16 34 H 0.42 6.54 6.85 -92.71 -0.64 5.90 16 35 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.13 5.10 8.06 -2.91 -0.02 5.08 16 37 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 38 H 0.12 5.71 5.63 -2.91 -0.02 5.70 16 39 H 0.12 5.14 6.22 -2.91 -0.02 5.12 16 40 H 0.16 1.13 6.41 -2.91 -0.02 1.11 16 41 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.41 -0.16 9.06 -74.06 -0.67 -0.83 16 Total: -1.00 -81.54 360.92 3.54 -78.00 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.21 Total: 23.12 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 4.46 Total: -32.13 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -1.32 Total: -73.87 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.42 Total: -41.10 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -81.54 3.54 -78.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117664957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.274 kcal (2) G-P(sol) polarization free energy of solvation -81.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds