Wall clock time and date at job start Tue Mar 31 2020 15:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46983 * 2 1 4 4 H 1.08998 * 109.47113 * 305.00543 * 3 2 1 5 5 C 1.50699 * 109.47255 * 184.99890 * 3 2 1 6 6 H 1.07999 * 120.00539 * 240.00213 * 5 3 2 7 7 C 1.37882 * 119.99792 * 60.00128 * 5 3 2 8 8 N 1.31516 * 119.99541 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00096 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46942 * 60.00229 * 9 7 5 11 11 H 1.48499 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47286 * 300.00617 * 9 7 5 13 13 N 1.46507 * 109.46889 * 65.00475 * 3 2 1 14 14 C 1.38000 * 119.99773 * 274.99783 * 13 3 2 15 15 N 1.33090 * 120.03413 * 359.97438 * 14 13 3 16 16 C 1.32294 * 120.06972 * 179.97438 * 15 14 13 17 17 Cl 1.73599 * 119.92776 * 179.97438 * 16 15 14 18 18 N 1.32312 * 120.14012 * 0.26421 * 16 15 14 19 19 C 1.33062 * 120.07050 * 359.48424 * 18 16 15 20 20 N 1.38002 * 120.03376 * 180.23611 * 19 18 16 21 21 C 1.47025 * 110.99558 * 123.91317 * 20 19 18 22 22 C 1.53098 * 109.25136 * 177.60856 * 21 20 19 23 23 O 1.43015 * 109.26344 * 56.84626 * 22 21 20 24 24 C 1.43018 * 113.73488 * 301.32967 * 23 22 21 25 25 C 1.47007 * 111.00130 * 0.27601 * 20 19 18 26 26 N 1.32855 * 120.03398 * 179.97438 * 14 13 3 27 27 H 1.09002 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46770 * 299.99405 * 1 2 3 29 29 H 1.08996 * 109.47099 * 59.99697 * 1 2 3 30 30 H 1.08994 * 109.47008 * 240.00488 * 2 1 3 31 31 H 1.08996 * 109.47099 * 120.00303 * 2 1 3 32 32 H 0.97007 * 119.99227 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00436 * 94.99832 * 13 3 2 34 34 H 1.08999 * 109.50233 * 297.53582 * 21 20 19 35 35 H 1.08988 * 109.50702 * 57.67322 * 21 20 19 36 36 H 1.09004 * 109.50763 * 296.90557 * 22 21 20 37 37 H 1.09000 * 109.54111 * 176.80054 * 22 21 20 38 38 H 1.09005 * 109.50480 * 298.73147 * 24 23 22 39 39 H 1.08999 * 109.53553 * 178.62479 * 24 23 22 40 40 H 1.09001 * 109.50525 * 302.32819 * 25 20 19 41 41 H 1.08998 * 109.50613 * 62.45841 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8814 -1.3819 10 1 6.5975 0.1474 -0.2350 11 1 6.3977 0.2169 -2.6504 12 1 6.4994 2.2816 -1.3821 13 7 1.6525 2.0974 1.2519 14 6 0.4060 2.6779 1.3699 15 7 -0.4443 2.6435 0.3466 16 6 -1.6396 3.1993 0.4591 17 17 -2.7456 3.1529 -0.8781 18 7 -1.9916 3.7954 1.5867 19 6 -1.1478 3.8286 2.6149 20 7 -1.5176 4.4463 3.7923 21 6 -1.4062 3.5215 4.9299 22 6 -1.7674 4.2625 6.2200 23 8 -3.0817 4.8125 6.0960 24 6 -3.2256 5.7180 4.9984 25 6 -2.8793 4.9919 3.6959 26 7 0.0537 3.2715 2.5050 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8293 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -2.0900 2.6849 4.7870 35 1 -0.3840 3.1496 4.9978 36 1 -1.0511 5.0662 6.3909 37 1 -1.7415 3.5674 7.0592 38 1 -2.5518 6.5641 5.1338 39 1 -4.2543 6.0756 4.9533 40 1 -2.9322 5.6931 2.8630 41 1 -3.5865 4.1786 3.5334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:35 Heat of formation + Delta-G solvation = 45.025764 kcal Electronic energy + Delta-G solvation = -26142.095040 eV Core-core repulsion = 22312.532680 eV Total energy + Delta-G solvation = -3829.562360 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50274 -39.70994 -37.14814 -36.89929 -35.78253 -33.72389 -32.65037 -31.87204 -31.41397 -30.61176 -27.84043 -27.05964 -24.78297 -23.73994 -23.49020 -22.63301 -20.86910 -20.06134 -18.77494 -18.08507 -17.06880 -16.35568 -16.05655 -15.96730 -15.39601 -15.30817 -14.96426 -14.83598 -14.62816 -14.47018 -13.96326 -13.72717 -13.13386 -12.78655 -12.66995 -12.30539 -11.87712 -11.78087 -11.66145 -11.37856 -11.35425 -11.22281 -11.03396 -10.96218 -10.80284 -10.56906 -10.32326 -10.15139 -9.93355 -9.77352 -9.44874 -9.32395 -9.09675 -8.80601 -8.58335 -7.76564 -6.23608 -4.33785 1.11388 1.44141 1.51623 2.88967 3.20526 3.26008 3.26895 3.47391 3.58826 4.05916 4.24218 4.42479 4.50340 4.70988 4.74370 4.86464 4.95178 5.05477 5.08663 5.32145 5.38895 5.45229 5.59262 5.71977 5.87919 6.16578 6.23915 6.27935 6.45716 6.55173 6.77151 6.82629 6.90783 7.01443 7.08930 7.20111 7.35625 7.54036 7.65729 7.79586 8.03549 8.28677 8.60265 8.82701 9.32976 10.81586 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.003505 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.469591 B = 7986.006470 C = 9163.727230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.276 3.724 4 H 0.061 0.939 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.071 3.929 8 N -0.879 5.879 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.641 5.641 14 C 0.627 3.373 15 N -0.582 5.582 16 C 0.458 3.542 17 Cl 0.023 6.977 18 N -0.633 5.633 19 C 0.575 3.425 20 N -0.454 5.454 21 C 0.031 3.969 22 C 0.065 3.935 23 O -0.385 6.385 24 C 0.062 3.938 25 C 0.033 3.967 26 N -0.624 5.624 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.032 0.968 32 H 0.267 0.733 33 H 0.410 0.590 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.916 6.532 11.197 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.174 3.826 4 H 0.078 0.922 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.271 5.271 14 C 0.263 3.737 15 N -0.318 5.318 16 C 0.152 3.848 17 Cl 0.051 6.949 18 N -0.371 5.371 19 C 0.209 3.791 20 N -0.176 5.176 21 C -0.096 4.096 22 C -0.012 4.012 23 O -0.303 6.303 24 C -0.015 4.015 25 C -0.094 4.094 26 N -0.361 5.361 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.247 0.753 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.621 6.627 10.937 17.279 hybrid contribution 0.922 -0.470 -0.465 1.134 sum -10.699 6.158 10.472 16.188 Atomic orbital electron populations 1.21820 0.98408 0.98101 1.00644 1.21961 0.92571 0.99409 1.02676 1.19091 0.94635 0.89305 0.79533 0.92157 1.21129 0.90196 1.39836 1.06719 0.91920 1.24843 0.98827 0.94510 0.95173 1.69872 1.35371 1.37090 1.09266 0.86461 0.84441 0.78427 0.77544 1.20073 1.21023 1.20105 1.45435 1.08893 1.53244 1.19491 1.19216 0.87658 0.84418 0.82439 1.68323 1.03785 1.27455 1.32197 1.22559 0.87498 0.87143 0.87629 1.98424 1.58918 1.96376 1.41173 1.68304 1.37111 1.29502 1.02197 1.20486 0.84787 0.84483 0.89364 1.58462 1.26404 1.32153 1.00536 1.22910 1.04483 0.93357 0.88837 1.22729 0.84682 0.97823 0.95983 1.88000 1.30610 1.62099 1.49631 1.22794 1.02546 0.91763 0.84447 1.22759 0.86299 1.00771 0.99613 1.68159 1.18524 1.22124 1.27272 0.95601 0.95745 0.92267 0.87697 0.94911 0.92304 0.75338 0.92686 0.87387 0.91676 0.87610 0.92032 0.87655 0.88076 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.44 37.16 0.31 -2.43 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.05 16 3 C 0.28 6.52 2.24 -69.08 -0.15 6.36 16 4 H 0.06 1.61 7.53 -51.93 -0.39 1.22 16 5 C -0.54 -13.67 8.73 -34.44 -0.30 -13.97 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -23.42 11.29 55.43 0.63 -22.79 16 9 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 13 N -0.64 -13.23 5.14 -56.80 -0.29 -13.52 16 14 C 0.63 12.59 7.02 -322.16 -2.26 10.33 16 15 N -0.58 -11.75 6.54 -12.42 -0.08 -11.83 16 16 C 0.46 8.28 8.25 -91.28 -0.75 7.53 16 17 Cl 0.02 0.36 29.30 -51.86 -1.52 -1.16 16 18 N -0.63 -10.76 8.85 -12.42 -0.11 -10.87 16 19 C 0.57 9.64 7.18 -322.15 -2.31 7.32 16 20 N -0.45 -6.14 4.78 -174.95 -0.84 -6.97 16 21 C 0.03 0.35 5.50 -3.71 -0.02 0.33 16 22 C 0.06 0.59 7.01 37.21 0.26 0.85 16 23 O -0.39 -3.99 10.83 -35.23 -0.38 -4.37 16 24 C 0.06 0.55 7.01 37.21 0.26 0.81 16 25 C 0.03 0.37 4.81 -3.72 -0.02 0.35 16 26 N -0.62 -11.45 9.90 -14.76 -0.15 -11.60 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.02 0.50 5.59 -51.92 -0.29 0.21 16 29 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.41 7.83 8.66 -40.82 -0.35 7.47 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.11 1.28 7.70 -51.94 -0.40 0.88 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.15 7.85 -51.93 -0.41 0.74 16 41 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -27.61 346.45 -13.24 -40.84 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.47 Total: 5.93 kcal Atomic # 6 Polarization: 21.37 SS G_CDS: -5.23 Total: 16.14 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -0.84 Total: -77.59 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.38 Total: -4.37 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.52 Total: -1.16 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.61 -13.24 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.867 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds