Wall clock time and date at job start Tue Mar 31 2020 15:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46983 * 2 1 4 4 H 1.08998 * 109.47113 * 305.00543 * 3 2 1 5 5 C 1.50699 * 109.47255 * 184.99890 * 3 2 1 6 6 H 1.07999 * 120.00539 * 240.00213 * 5 3 2 7 7 C 1.37882 * 119.99792 * 60.00128 * 5 3 2 8 8 N 1.31516 * 119.99541 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00096 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46942 * 60.00229 * 9 7 5 11 11 H 1.48499 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47286 * 300.00617 * 9 7 5 13 13 N 1.46507 * 109.46889 * 65.00475 * 3 2 1 14 14 C 1.38000 * 119.99773 * 274.99783 * 13 3 2 15 15 N 1.33090 * 120.03413 * 359.97438 * 14 13 3 16 16 C 1.32294 * 120.06972 * 179.97438 * 15 14 13 17 17 Cl 1.73599 * 119.92776 * 179.97438 * 16 15 14 18 18 N 1.32312 * 120.14012 * 0.26421 * 16 15 14 19 19 C 1.33062 * 120.07050 * 359.48424 * 18 16 15 20 20 N 1.38002 * 120.03376 * 180.23611 * 19 18 16 21 21 C 1.47025 * 110.99558 * 123.91317 * 20 19 18 22 22 C 1.53098 * 109.25136 * 177.60856 * 21 20 19 23 23 O 1.43015 * 109.26344 * 56.84626 * 22 21 20 24 24 C 1.43018 * 113.73488 * 301.32967 * 23 22 21 25 25 C 1.47007 * 111.00130 * 0.27601 * 20 19 18 26 26 N 1.32855 * 120.03398 * 179.97438 * 14 13 3 27 27 H 1.09002 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46770 * 299.99405 * 1 2 3 29 29 H 1.08996 * 109.47099 * 59.99697 * 1 2 3 30 30 H 1.08994 * 109.47008 * 240.00488 * 2 1 3 31 31 H 1.08996 * 109.47099 * 120.00303 * 2 1 3 32 32 H 0.97007 * 119.99227 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00436 * 94.99832 * 13 3 2 34 34 H 1.08999 * 109.50233 * 297.53582 * 21 20 19 35 35 H 1.08988 * 109.50702 * 57.67322 * 21 20 19 36 36 H 1.09004 * 109.50763 * 296.90557 * 22 21 20 37 37 H 1.09000 * 109.54111 * 176.80054 * 22 21 20 38 38 H 1.09005 * 109.50480 * 298.73147 * 24 23 22 39 39 H 1.08999 * 109.53553 * 178.62479 * 24 23 22 40 40 H 1.09001 * 109.50525 * 302.32819 * 25 20 19 41 41 H 1.08998 * 109.50613 * 62.45841 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8814 -1.3819 10 1 6.5975 0.1474 -0.2350 11 1 6.3977 0.2169 -2.6504 12 1 6.4994 2.2816 -1.3821 13 7 1.6525 2.0974 1.2519 14 6 0.4060 2.6779 1.3699 15 7 -0.4443 2.6435 0.3466 16 6 -1.6396 3.1993 0.4591 17 17 -2.7456 3.1529 -0.8781 18 7 -1.9916 3.7954 1.5867 19 6 -1.1478 3.8286 2.6149 20 7 -1.5176 4.4463 3.7923 21 6 -1.4062 3.5215 4.9299 22 6 -1.7674 4.2625 6.2200 23 8 -3.0817 4.8125 6.0960 24 6 -3.2256 5.7180 4.9984 25 6 -2.8793 4.9919 3.6959 26 7 0.0537 3.2715 2.5050 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8293 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -2.0900 2.6849 4.7870 35 1 -0.3840 3.1496 4.9978 36 1 -1.0511 5.0662 6.3909 37 1 -1.7415 3.5674 7.0592 38 1 -2.5518 6.5641 5.1338 39 1 -4.2543 6.0756 4.9533 40 1 -2.9322 5.6931 2.8630 41 1 -3.5865 4.1786 3.5334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:35 Heat of formation + Delta-G solvation = 31.017400 kcal Electronic energy + Delta-G solvation = -26142.702489 eV Core-core repulsion = 22312.532680 eV Total energy + Delta-G solvation = -3830.169809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.86911 -40.69594 -38.65386 -38.16973 -37.02644 -35.33565 -34.16331 -33.39892 -32.54402 -32.05908 -29.04004 -28.68524 -25.98579 -25.24548 -24.74906 -24.11255 -21.97170 -21.65515 -20.19732 -19.47131 -18.62026 -17.51361 -17.42427 -17.14339 -16.85315 -16.53344 -16.13624 -16.03079 -15.71717 -15.58662 -15.51127 -15.17182 -14.71846 -14.55830 -13.78576 -13.60217 -13.40963 -13.19590 -12.91076 -12.75848 -12.70443 -12.60441 -12.51730 -12.37581 -12.18876 -12.11423 -11.72560 -11.62016 -11.58960 -11.10342 -10.85489 -10.80292 -10.67377 -10.49038 -9.97498 -9.40422 -8.18420 -6.34954 -0.28626 0.00581 0.14204 1.45322 1.46140 1.53317 1.63278 2.04603 2.41849 2.63205 2.87671 3.10646 3.13998 3.23384 3.75679 3.84438 3.99648 4.12469 4.17425 4.25500 4.49251 4.51744 4.56771 4.70120 4.72080 4.75733 4.91318 4.93660 4.99976 5.09741 5.12913 5.22784 5.38826 5.53035 5.58371 5.67374 5.74342 5.80440 6.04250 6.10074 6.21011 6.59802 6.75606 7.25296 7.37862 8.86285 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.003505 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.469591 B = 7986.006470 C = 9163.727230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.119 4.119 3 C 0.290 3.710 4 H 0.024 0.976 5 C -0.555 4.555 6 H 0.066 0.934 7 C 0.026 3.974 8 N -0.906 5.906 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.646 5.646 14 C 0.621 3.379 15 N -0.608 5.608 16 C 0.449 3.551 17 Cl 0.046 6.954 18 N -0.624 5.624 19 C 0.569 3.431 20 N -0.454 5.454 21 C 0.031 3.969 22 C 0.070 3.930 23 O -0.396 6.396 24 C 0.067 3.933 25 C 0.033 3.967 26 N -0.627 5.627 27 H 0.042 0.958 28 H 0.023 0.977 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.267 0.733 33 H 0.415 0.585 34 H 0.049 0.951 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.451 7.259 12.812 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.158 4.158 3 C 0.187 3.813 4 H 0.042 0.958 5 C -0.594 4.594 6 H 0.084 0.916 7 C -0.176 4.176 8 N -0.543 5.543 9 Si 0.791 3.209 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.277 5.277 14 C 0.256 3.744 15 N -0.344 5.344 16 C 0.144 3.856 17 Cl 0.074 6.926 18 N -0.362 5.362 19 C 0.204 3.796 20 N -0.175 5.175 21 C -0.095 4.095 22 C -0.007 4.007 23 O -0.314 6.314 24 C -0.010 4.010 25 C -0.094 4.094 26 N -0.364 5.364 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.253 0.747 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.148 0.852 38 H 0.088 0.912 39 H 0.148 0.852 40 H 0.117 0.883 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.208 7.389 12.601 19.038 hybrid contribution 0.958 -0.603 -0.933 1.468 sum -11.250 6.785 11.668 17.571 Atomic orbital electron populations 1.21626 0.96746 0.98918 0.99994 1.21793 0.93936 0.98715 1.01380 1.18646 0.93695 0.89297 0.79655 0.95765 1.21458 0.91253 1.39720 1.06939 0.91565 1.25608 1.02885 0.94193 0.94895 1.69999 1.36933 1.37739 1.09667 0.85491 0.79507 0.78324 0.77582 1.19254 1.20917 1.19963 1.45069 1.09649 1.54240 1.18777 1.19259 0.87446 0.84606 0.83067 1.68318 1.04712 1.28681 1.32722 1.22923 0.87399 0.86776 0.88524 1.98426 1.57845 1.96214 1.40104 1.68448 1.36761 1.29017 1.01964 1.21011 0.84379 0.83824 0.90421 1.58608 1.27554 1.31636 0.99724 1.23021 1.04114 0.93271 0.89119 1.22834 0.84401 0.98309 0.95111 1.87998 1.31201 1.62357 1.49864 1.22906 1.04272 0.91245 0.82608 1.22882 0.84713 1.00541 1.01238 1.68182 1.19348 1.22394 1.26477 0.93921 0.95781 0.93420 0.90166 0.94780 0.92370 0.74665 0.93268 0.87946 0.90890 0.85217 0.91207 0.85158 0.88304 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 8.44 71.98 0.61 -4.20 16 2 C -0.12 -5.54 5.45 30.60 0.17 -5.37 16 3 C 0.29 14.03 2.24 44.24 0.10 14.12 16 4 H 0.02 1.36 7.53 -2.39 -0.02 1.34 16 5 C -0.56 -28.44 8.73 25.60 0.22 -28.21 16 6 H 0.07 3.26 7.74 -2.91 -0.02 3.24 16 7 C 0.03 1.32 5.29 84.66 0.45 1.77 16 8 N -0.91 -49.13 11.29 21.45 0.24 -48.89 16 9 Si 0.97 41.02 29.54 68.60 2.03 43.05 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 13 N -0.65 -27.07 5.14 -333.62 -1.71 -28.78 16 14 C 0.62 25.13 7.02 261.26 1.83 26.97 16 15 N -0.61 -24.81 6.54 -193.20 -1.26 -26.07 16 16 C 0.45 16.16 8.25 180.58 1.49 17.65 16 17 Cl 0.05 1.39 29.30 -2.72 -0.08 1.31 16 18 N -0.62 -20.81 8.85 -193.20 -1.71 -22.51 16 19 C 0.57 18.67 7.18 261.26 1.88 20.55 16 20 N -0.45 -11.65 4.78 -707.40 -3.38 -15.03 16 21 C 0.03 0.65 5.50 86.31 0.47 1.13 16 22 C 0.07 1.09 7.01 72.01 0.50 1.59 16 23 O -0.40 -7.09 10.83 -148.98 -1.61 -8.70 16 24 C 0.07 1.00 7.01 72.01 0.50 1.50 16 25 C 0.03 0.68 4.81 86.31 0.42 1.10 16 26 N -0.63 -22.86 9.90 -200.61 -1.99 -24.85 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.02 0.98 5.59 -2.38 -0.01 0.97 16 29 H 0.05 2.07 7.66 -2.39 -0.02 2.05 16 30 H 0.08 4.16 5.95 -2.39 -0.01 4.15 16 31 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.27 13.81 8.31 -92.70 -0.77 13.04 16 33 H 0.42 16.04 8.66 -92.71 -0.80 15.24 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 2.31 7.70 -2.39 -0.02 2.29 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 0.96 8.14 -2.38 -0.02 0.95 16 39 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 2.08 7.85 -2.39 -0.02 2.07 16 41 H 0.06 1.31 8.03 -2.39 -0.02 1.29 16 Total: -1.00 -59.10 346.45 -0.56 -59.66 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.27 Total: 22.23 kcal Atomic # 6 Polarization: 39.95 SS G_CDS: 8.65 Total: 48.59 kcal Atomic # 7 Polarization: -156.33 SS G_CDS: -9.81 Total: -166.14 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -1.61 Total: -8.70 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 17 Polarization: 1.39 SS G_CDS: -0.08 Total: 1.31 kcal Total: -59.10 -0.56 -59.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.677 kcal (2) G-P(sol) polarization free energy of solvation -59.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds