Wall clock time and date at job start Tue Mar 31 2020 14:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99860 * 2 1 4 4 C 1.38752 * 120.05320 * 0.02742 * 3 2 1 5 5 C 1.38118 * 119.94213 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05691 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94487 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47403 * 300.00495 * 7 6 5 9 9 C 1.53003 * 109.46674 * 60.00383 * 7 6 5 10 10 C 1.38242 * 120.10837 * 359.75729 * 6 5 4 11 11 C 1.38160 * 120.05692 * 0.49466 * 10 6 5 12 12 S 1.76204 * 120.03125 * 179.77501 * 11 10 6 13 13 O 1.42105 * 106.39972 * 1.18669 * 12 11 10 14 14 O 1.42098 * 106.40426 * 228.26842 * 12 11 10 15 15 N 1.65595 * 107.21987 * 114.72554 * 12 11 10 16 16 C 1.46498 * 120.00275 * 270.00253 * 15 12 11 17 17 C 1.46498 * 119.99850 * 89.99964 * 15 12 11 18 18 C 1.50709 * 109.47113 * 95.00266 * 17 15 12 19 19 H 1.08002 * 119.99589 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00118 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46998 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47811 * 119.99362 * 22 20 18 25 25 H 1.48498 * 109.47123 * 239.99516 * 22 20 18 26 26 H 1.09001 * 109.47102 * 299.99713 * 1 2 3 27 27 H 1.09001 * 109.47097 * 60.00135 * 1 2 3 28 28 H 1.09007 * 109.46738 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.03117 * 359.97438 * 4 3 2 30 30 H 1.08006 * 119.97536 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.46730 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46847 * 59.99706 * 8 7 6 33 33 H 1.08992 * 109.46912 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.46855 * 300.00042 * 8 7 6 35 35 H 1.09000 * 109.46907 * 60.00333 * 9 7 6 36 36 H 1.09005 * 109.46596 * 179.97438 * 9 7 6 37 37 H 1.08993 * 109.47461 * 299.99953 * 9 7 6 38 38 H 1.07998 * 119.97346 * 180.25586 * 10 6 5 39 39 H 1.09009 * 109.46956 * 90.00041 * 16 15 12 40 40 H 1.08994 * 109.47112 * 209.99740 * 16 15 12 41 41 H 1.09001 * 109.47155 * 330.00448 * 16 15 12 42 42 H 1.08996 * 109.47764 * 215.00207 * 17 15 12 43 43 H 1.09003 * 109.47361 * 335.00581 * 17 15 12 44 44 H 0.96993 * 120.00108 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9207 3.6047 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0016 8 6 3.5752 5.8003 -1.2479 9 6 3.5744 5.8006 1.2507 10 6 4.0559 2.5172 0.0066 11 6 3.4311 1.2849 0.0009 12 16 4.3929 -0.1915 0.0013 13 8 5.7538 0.2162 0.0364 14 8 3.8561 -1.0204 -1.0204 15 7 4.1000 -0.9670 1.4348 16 6 4.9336 -0.6823 2.6054 17 6 3.0071 -1.9377 1.5325 18 6 3.5469 -3.3264 1.3056 19 1 4.5988 -3.4712 1.1080 20 6 2.6978 -4.4117 1.3493 21 7 1.4169 -4.2353 1.5895 22 14 3.3670 -6.1330 1.0689 23 1 4.8295 -6.0612 0.8214 24 1 3.1083 -6.9667 2.2702 25 1 2.6953 -6.7395 -0.1085 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 0.2127 2.3203 0.0006 30 1 1.3338 4.5114 0.0020 31 1 5.0665 4.8758 0.0016 32 1 2.4946 5.9431 -1.2482 33 1 4.0704 6.7713 -1.2480 34 1 3.8684 5.2432 -2.1377 35 1 3.8670 5.2437 2.1408 36 1 4.0695 6.7717 1.2509 37 1 2.4938 5.9433 1.2503 38 1 5.1343 2.5752 0.0112 39 1 4.4967 0.1407 3.1711 40 1 4.9880 -1.5689 3.2370 41 1 5.9364 -0.4066 2.2789 42 1 2.5575 -1.8801 2.5237 43 1 2.2532 -1.7132 0.7779 44 1 0.8196 -4.9989 1.6206 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191656111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:47 Heat of formation + Delta-G solvation = -89.763212 kcal Electronic energy + Delta-G solvation = -27206.597389 eV Core-core repulsion = 23444.481439 eV Total energy + Delta-G solvation = -3762.115950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.23281 -38.16440 -36.39510 -35.35974 -35.00391 -34.84120 -32.34763 -31.29884 -29.39548 -27.65544 -27.32527 -27.02119 -24.97637 -23.66241 -22.48088 -22.11200 -20.57898 -18.42470 -17.85779 -16.95942 -16.61633 -16.28223 -15.88513 -15.51796 -15.23579 -15.00796 -14.52728 -14.34293 -14.18608 -13.69668 -13.65083 -13.27350 -13.19649 -12.88397 -12.63890 -12.33948 -12.12493 -12.05662 -12.02906 -11.58859 -11.43991 -11.38619 -11.25667 -11.21764 -11.03033 -10.98334 -10.86520 -10.80101 -10.58466 -10.32647 -10.17609 -9.93421 -9.59546 -9.28912 -8.36135 -8.15685 -7.90187 -5.99138 -4.00782 0.90526 1.25135 1.40119 3.33975 3.37491 3.42711 3.45312 3.49263 3.89836 4.40548 4.49507 4.55546 4.63954 4.83916 4.87841 5.02569 5.10263 5.22822 5.34822 5.36773 5.38710 5.41704 5.45806 5.53174 5.62218 5.64945 5.76961 5.79354 5.83179 5.86510 6.03076 6.05767 6.10137 6.12041 6.18707 6.39205 6.46986 6.67939 6.74617 7.35707 7.41657 7.60094 7.78098 7.99682 8.31763 9.01499 9.62712 11.09552 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.004111 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.763357 B = 6810.053139 C = 7480.779897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.288 6.288 3 C 0.226 3.774 4 C -0.230 4.230 5 C -0.028 4.028 6 C -0.145 4.145 7 C -0.052 4.052 8 C -0.145 4.145 9 C -0.144 4.144 10 C 0.013 3.987 11 C -0.707 4.707 12 S 2.692 3.308 13 O -0.983 6.983 14 O -0.934 6.934 15 N -0.983 5.983 16 C 0.094 3.906 17 C 0.250 3.750 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.897 5.897 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.283 1.283 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.144 0.856 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 19.270 -0.730 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.199 6.199 3 C 0.177 3.823 4 C -0.249 4.249 5 C -0.046 4.046 6 C -0.147 4.147 7 C -0.070 4.070 8 C -0.202 4.202 9 C -0.202 4.202 10 C -0.006 4.006 11 C -0.791 4.791 12 S 2.779 3.221 13 O -0.974 6.974 14 O -0.924 6.924 15 N -0.824 5.824 16 C -0.052 4.052 17 C 0.128 3.872 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.537 5.537 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.209 1.209 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.161 0.839 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.081 0.919 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.722 18.703 -1.351 18.766 hybrid contribution -0.652 -0.350 0.223 0.773 sum -1.375 18.353 -1.128 18.439 Atomic orbital electron populations 1.23188 0.77365 1.05471 1.00648 1.86424 1.22497 1.24869 1.86075 1.18493 0.90688 0.85427 0.87693 1.21292 1.00267 0.92256 1.11107 1.20935 0.94042 0.96861 0.92773 1.19787 0.93676 0.94813 1.06380 1.20048 0.99922 0.91387 0.95679 1.21877 1.01400 0.99619 0.97315 1.21872 1.01386 0.99603 0.97300 1.20694 1.00119 0.89612 0.90139 1.30679 1.04732 1.20737 1.22971 1.02024 0.73148 0.72918 0.73968 1.93466 1.32629 1.84036 1.87232 1.93604 1.79700 1.64338 1.54797 1.57279 1.45203 1.53614 1.26297 1.21373 0.93890 1.01202 0.88780 1.19308 0.83737 0.85358 0.98757 1.21595 0.95215 0.91431 1.48022 0.92207 1.24885 0.94787 0.99141 0.95156 1.69924 1.03025 1.30745 1.49999 0.86500 0.79377 0.84233 0.77686 1.19650 1.21100 1.20884 0.92511 0.92742 0.86762 0.84801 0.85622 0.90173 0.92651 0.92427 0.92403 0.92362 0.92445 0.92660 0.83852 0.94428 0.90250 0.91476 0.95207 0.91905 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.29 -5.45 6.48 -29.14 -0.19 -5.64 16 3 C 0.23 3.91 6.63 -39.22 -0.26 3.65 16 4 C -0.23 -3.11 9.04 -39.44 -0.36 -3.47 16 5 C -0.03 -0.33 8.70 -39.60 -0.34 -0.68 16 6 C -0.15 -1.82 4.78 -104.60 -0.50 -2.33 16 7 C -0.05 -0.50 3.09 -91.77 -0.28 -0.78 16 8 C -0.14 -1.20 9.01 37.16 0.33 -0.86 16 9 C -0.14 -1.19 9.01 37.16 0.33 -0.85 16 10 C 0.01 0.20 9.17 -39.61 -0.36 -0.16 16 11 C -0.71 -12.78 5.92 -39.44 -0.23 -13.02 16 12 S 2.69 58.17 5.25 -107.50 -0.56 57.60 16 13 O -0.98 -21.18 15.57 -57.17 -0.89 -22.07 16 14 O -0.93 -23.71 16.27 -62.48 -1.02 -24.73 16 15 N -0.98 -21.69 3.17 -123.05 -0.39 -22.08 16 16 C 0.09 1.71 10.68 59.85 0.64 2.35 16 17 C 0.25 6.41 4.88 -5.19 -0.03 6.39 16 18 C -0.52 -14.93 9.38 -34.44 -0.32 -15.25 16 19 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.90 -25.89 13.29 55.43 0.74 -25.15 16 22 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 27 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.11 1.67 8.14 -51.92 -0.42 1.24 16 29 H 0.13 1.45 6.30 -52.49 -0.33 1.12 16 30 H 0.13 1.11 7.09 -52.48 -0.37 0.74 16 31 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 32 H 0.05 0.42 7.39 -51.93 -0.38 0.04 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.42 7.38 -51.93 -0.38 0.04 16 38 H 0.14 2.02 7.22 -52.49 -0.38 1.64 16 39 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 41 H 0.07 1.14 7.02 -51.93 -0.36 0.77 16 42 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 43 H 0.06 1.68 4.85 -51.93 -0.25 1.43 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -34.26 368.04 -8.87 -43.13 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.59 Total: -1.63 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -0.49 Total: -21.97 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.35 Total: -47.23 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -2.10 Total: -52.44 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 58.17 SS G_CDS: -0.56 Total: 57.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.26 -8.87 -43.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191656111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.638 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds