Wall clock time and date at job start Tue Mar 31 2020 14:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99860 * 2 1 4 4 C 1.38752 * 120.05320 * 0.02742 * 3 2 1 5 5 C 1.38118 * 119.94213 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05691 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94487 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47403 * 300.00495 * 7 6 5 9 9 C 1.53003 * 109.46674 * 60.00383 * 7 6 5 10 10 C 1.38242 * 120.10837 * 359.75729 * 6 5 4 11 11 C 1.38160 * 120.05692 * 0.49466 * 10 6 5 12 12 S 1.76204 * 120.03125 * 179.77501 * 11 10 6 13 13 O 1.42105 * 106.39972 * 1.18669 * 12 11 10 14 14 O 1.42098 * 106.40426 * 228.26842 * 12 11 10 15 15 N 1.65595 * 107.21987 * 114.72554 * 12 11 10 16 16 C 1.46498 * 120.00275 * 270.00253 * 15 12 11 17 17 C 1.46498 * 119.99850 * 89.99964 * 15 12 11 18 18 C 1.50709 * 109.47113 * 95.00266 * 17 15 12 19 19 H 1.08002 * 119.99589 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00118 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46998 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47811 * 119.99362 * 22 20 18 25 25 H 1.48498 * 109.47123 * 239.99516 * 22 20 18 26 26 H 1.09001 * 109.47102 * 299.99713 * 1 2 3 27 27 H 1.09001 * 109.47097 * 60.00135 * 1 2 3 28 28 H 1.09007 * 109.46738 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.03117 * 359.97438 * 4 3 2 30 30 H 1.08006 * 119.97536 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.46730 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46847 * 59.99706 * 8 7 6 33 33 H 1.08992 * 109.46912 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.46855 * 300.00042 * 8 7 6 35 35 H 1.09000 * 109.46907 * 60.00333 * 9 7 6 36 36 H 1.09005 * 109.46596 * 179.97438 * 9 7 6 37 37 H 1.08993 * 109.47461 * 299.99953 * 9 7 6 38 38 H 1.07998 * 119.97346 * 180.25586 * 10 6 5 39 39 H 1.09009 * 109.46956 * 90.00041 * 16 15 12 40 40 H 1.08994 * 109.47112 * 209.99740 * 16 15 12 41 41 H 1.09001 * 109.47155 * 330.00448 * 16 15 12 42 42 H 1.08996 * 109.47764 * 215.00207 * 17 15 12 43 43 H 1.09003 * 109.47361 * 335.00581 * 17 15 12 44 44 H 0.96993 * 120.00108 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9207 3.6047 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0016 8 6 3.5752 5.8003 -1.2479 9 6 3.5744 5.8006 1.2507 10 6 4.0559 2.5172 0.0066 11 6 3.4311 1.2849 0.0009 12 16 4.3929 -0.1915 0.0013 13 8 5.7538 0.2162 0.0364 14 8 3.8561 -1.0204 -1.0204 15 7 4.1000 -0.9670 1.4348 16 6 4.9336 -0.6823 2.6054 17 6 3.0071 -1.9377 1.5325 18 6 3.5469 -3.3264 1.3056 19 1 4.5988 -3.4712 1.1080 20 6 2.6978 -4.4117 1.3493 21 7 1.4169 -4.2353 1.5895 22 14 3.3670 -6.1330 1.0689 23 1 4.8295 -6.0612 0.8214 24 1 3.1083 -6.9667 2.2702 25 1 2.6953 -6.7395 -0.1085 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 0.2127 2.3203 0.0006 30 1 1.3338 4.5114 0.0020 31 1 5.0665 4.8758 0.0016 32 1 2.4946 5.9431 -1.2482 33 1 4.0704 6.7713 -1.2480 34 1 3.8684 5.2432 -2.1377 35 1 3.8670 5.2437 2.1408 36 1 4.0695 6.7717 1.2509 37 1 2.4938 5.9433 1.2503 38 1 5.1343 2.5752 0.0112 39 1 4.4967 0.1407 3.1711 40 1 4.9880 -1.5689 3.2370 41 1 5.9364 -0.4066 2.2789 42 1 2.5575 -1.8801 2.5237 43 1 2.2532 -1.7132 0.7779 44 1 0.8196 -4.9989 1.6206 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191656111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:47 Heat of formation + Delta-G solvation = -112.383888 kcal Electronic energy + Delta-G solvation = -27207.578295 eV Core-core repulsion = 23444.481439 eV Total energy + Delta-G solvation = -3763.096856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37885 -39.27422 -38.11926 -37.15793 -36.77988 -35.75556 -34.45891 -32.42065 -30.43987 -29.60298 -28.11170 -27.91938 -26.76757 -24.75069 -24.15704 -23.47781 -21.57483 -19.72910 -19.39387 -18.59281 -18.43906 -17.72236 -17.37180 -16.86593 -16.76147 -16.27805 -16.05722 -15.54265 -15.22295 -15.11110 -14.89535 -14.56632 -14.46480 -14.01851 -13.90650 -13.71600 -13.47067 -13.24267 -13.19687 -13.06318 -12.99774 -12.95722 -12.90362 -12.73376 -12.43529 -12.27868 -12.17151 -12.05066 -11.93885 -11.77199 -11.70096 -11.60911 -11.33432 -10.53407 -10.42775 -9.72561 -9.25553 -8.15435 -6.25338 -0.48887 -0.15940 0.29504 1.38574 1.41246 1.52917 2.09885 2.21676 2.43473 2.50803 2.85479 3.15416 3.38457 3.73268 3.76488 3.92027 4.05551 4.17507 4.25739 4.29145 4.36090 4.37337 4.46675 4.58260 4.69365 4.70959 4.75599 4.83367 4.87425 4.89052 5.02637 5.04900 5.09570 5.13912 5.22396 5.33006 5.33802 5.45645 5.55494 5.55818 5.70820 5.81371 5.97906 6.18502 6.24905 6.81767 7.41155 8.92166 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.004111 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.763357 B = 6810.053139 C = 7480.779897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.201 3.799 4 C -0.224 4.224 5 C -0.015 4.015 6 C -0.135 4.135 7 C -0.053 4.053 8 C -0.144 4.144 9 C -0.143 4.143 10 C -0.002 4.002 11 C -0.720 4.720 12 S 2.695 3.305 13 O -0.994 6.994 14 O -0.986 6.986 15 N -0.994 5.994 16 C 0.087 3.913 17 C 0.265 3.735 18 C -0.549 4.549 19 H 0.047 0.953 20 C 0.015 3.985 21 N -0.919 5.919 22 Si 0.953 3.047 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.279 1.279 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.165 0.835 30 H 0.169 0.831 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.146 0.854 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.018 0.982 43 H 0.051 0.949 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 22.079 -0.414 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.242 6.242 3 C 0.153 3.847 4 C -0.243 4.243 5 C -0.032 4.032 6 C -0.136 4.136 7 C -0.072 4.072 8 C -0.201 4.201 9 C -0.200 4.200 10 C -0.022 4.022 11 C -0.811 4.811 12 S 2.789 3.211 13 O -0.985 6.985 14 O -0.976 6.976 15 N -0.833 5.833 16 C -0.058 4.058 17 C 0.142 3.858 18 C -0.589 4.589 19 H 0.065 0.935 20 C -0.184 4.184 21 N -0.559 5.559 22 Si 0.778 3.222 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.204 1.204 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.182 0.818 30 H 0.186 0.814 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.036 0.964 43 H 0.069 0.931 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.584 21.470 -1.016 21.552 hybrid contribution -0.400 -1.035 0.117 1.116 sum -1.983 20.435 -0.899 20.550 Atomic orbital electron populations 1.23393 0.75567 1.05306 1.03132 1.86342 1.24688 1.26485 1.86636 1.18764 0.90639 0.86206 0.89109 1.21652 1.01663 0.91326 1.09623 1.21447 0.93980 0.97764 0.90051 1.20185 0.94232 0.95199 1.04032 1.20152 0.99766 0.89984 0.97279 1.21881 1.02346 1.00001 0.95873 1.21869 1.02295 0.99964 0.95849 1.20866 1.00628 0.89625 0.91036 1.30021 1.04993 1.19330 1.26712 1.01372 0.73083 0.73554 0.73100 1.93432 1.33581 1.84254 1.87196 1.93531 1.80474 1.66942 1.56662 1.57161 1.44882 1.53918 1.27381 1.21587 0.94185 1.02091 0.87942 1.18882 0.84371 0.85051 0.97465 1.21896 0.94845 0.93404 1.48736 0.93501 1.25656 0.95165 1.02801 0.94809 1.70001 1.03794 1.31998 1.50078 0.85592 0.78568 0.79879 0.78164 1.19770 1.19384 1.20421 0.90147 0.89991 0.88429 0.81764 0.81388 0.90243 0.91491 0.90726 0.93486 0.93303 0.90784 0.91539 0.83610 0.91515 0.90681 0.90479 0.96361 0.93121 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.66 16 2 O -0.33 -12.81 6.48 -83.19 -0.54 -13.35 16 3 C 0.20 6.90 6.63 22.51 0.15 7.05 16 4 C -0.22 -5.41 9.04 22.36 0.20 -5.21 16 5 C -0.01 -0.29 8.70 22.25 0.19 -0.09 16 6 C -0.14 -3.02 4.78 -19.85 -0.09 -3.12 16 7 C -0.05 -0.84 3.09 -11.54 -0.04 -0.88 16 8 C -0.14 -1.83 9.01 71.98 0.65 -1.18 16 9 C -0.14 -1.78 9.01 71.98 0.65 -1.13 16 10 C 0.00 -0.07 9.17 22.25 0.20 0.14 16 11 C -0.72 -26.35 5.92 22.36 0.13 -26.21 16 12 S 2.70 121.64 5.25 -56.49 -0.30 121.35 16 13 O -0.99 -44.32 15.57 -128.00 -1.99 -46.31 16 14 O -0.99 -53.10 16.27 -122.92 -2.00 -55.10 16 15 N -0.99 -45.61 3.17 -543.22 -1.72 -47.33 16 16 C 0.09 3.23 10.68 127.77 1.36 4.60 16 17 C 0.27 14.24 4.88 85.64 0.42 14.66 16 18 C -0.55 -32.56 9.38 25.60 0.24 -32.32 16 19 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 20 C 0.02 0.88 5.46 84.65 0.46 1.34 16 21 N -0.92 -54.07 13.29 21.45 0.28 -53.79 16 22 Si 0.95 45.80 29.54 68.60 2.03 47.83 16 23 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 26 H 0.08 1.79 7.66 -2.39 -0.02 1.77 16 27 H 0.08 1.76 7.66 -2.39 -0.02 1.74 16 28 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 29 H 0.16 2.89 6.30 -2.91 -0.02 2.87 16 30 H 0.17 1.92 7.09 -2.91 -0.02 1.90 16 31 H 0.08 1.28 7.87 -2.39 -0.02 1.26 16 32 H 0.07 0.70 7.39 -2.39 -0.02 0.68 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.70 8.14 -2.38 -0.02 0.69 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.07 0.69 7.38 -2.39 -0.02 0.67 16 38 H 0.15 4.10 7.22 -2.91 -0.02 4.08 16 39 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.07 2.80 8.07 -2.39 -0.02 2.78 16 41 H 0.08 2.66 7.02 -2.39 -0.02 2.64 16 42 H 0.02 1.00 8.11 -2.39 -0.02 0.98 16 43 H 0.05 2.86 4.85 -2.39 -0.01 2.85 16 44 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -77.39 368.04 2.40 -74.99 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.99 Total: 12.41 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 5.64 Total: -40.70 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -1.44 Total: -101.12 kcal Atomic # 8 Polarization: -110.22 SS G_CDS: -4.53 Total: -114.75 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 121.64 SS G_CDS: -0.30 Total: 121.35 kcal Total: -77.39 2.40 -74.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191656111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.396 kcal (2) G-P(sol) polarization free energy of solvation -77.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds